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2020 – today
- 2024
[j30]Mengfei Ji
, Zaid Al-Ars, Yuchun Chang, Baolin Zhang:
Fully Pipelined FPGA Acceleration of Binary Convolutional Neural Networks with Neural Architecture Search. J. Circuits Syst. Comput. 33(10) (2024)- [j29]Casper Cromjongh, Yongding Tian, H. Peter Hofstee, Zaid Al-Ars:
Hardware-Accelerator Design by Composition: Dataflow Component Interfaces With Tydi-Chisel. IEEE Trans. Very Large Scale Integr. Syst. 32(12): 2281-2292 (2024) - [c132]Mees Frensel, Zaid Al-Ars, H. Peter Hofstee:
Learning Structured Sparsity for Efficient Nanopore DNA Basecalling Using Delayed Masking. BCB 2024: 12:1-12:9 - [c131]Prithvish Nembhani, Kanishkan Vadivel, Guangzhi Tang, Mohammad Tahghighi, Gert-Jan van Schaik, Manolis Sifalakis, Zaid Al-Ars, Amirreza Yousefzadeh:
SENSIM: An Event-driven Parallel Simulator for Multi-core Neuromorphic Systems. IJCNN 2024: 1-6 - [c130]Christiaan Boerkamp, Steven van der Vlugt, Zaid Al-Ars:
Tina: Acceleration of Non-NN Signal Processing Algorithms Using NN Accelerators. MLSP 2024: 1-6 - [c129]Raffaele Meloni, H. Peter Hofstee, Zaid Al-Ars:
Tywaves: A Typed Waveform Viewer for Chisel. NorCAS 2024: 1-6 - [i35]Zaid Al-Ars, Obinna Agba, Zhuoran Guo, Christiaan Boerkamp, Ziyaad Jaber, Tareq Jaber:
NLICE: Synthetic Medical Record Generation for Effective Primary Healthcare Differential Diagnosis. CoRR abs/2401.13756 (2024) - [i34]Mengfei Ji, Yuchun Chang, Baolin Zhang, Zaid Al-Ars:
NASH: Neural Architecture Search for Hardware-Optimized Machine Learning Models. CoRR abs/2403.01845 (2024) - [i33]Philip Groet, Joost Hoozemans, Andreas Grapentin, Felix Eberhardt, Zaid Al-Ars, H. Peter Hofstee:
Leveraging Apache Arrow for Zero-copy, Zero-serialization Cluster Shared Memory. CoRR abs/2404.03030 (2024) - [i32]Yongding Tian, Zaid Al-Ars, Maksim Kitsak, H. Peter Hofstee:
Vanishing Variance Problem in Fully Decentralized Neural-Network Systems. CoRR abs/2404.04616 (2024) - [i31]Raffaele Meloni, H. Peter Hofstee, Zaid Al-Ars:
Tywaves: A Typed Waveform Viewer for Chisel. CoRR abs/2408.10082 (2024) - [i30]Christiaan Boerkamp, Steven van der Vlugt, Zaid Al-Ars:
TINA: Acceleration of Non-NN Signal Processing Algorithms Using NN Accelerators. CoRR abs/2408.16551 (2024) - 2023
- [j28]Yongding Tian, Zhuoran Guo, Jiaxuan Zhang, Zaid Al-Ars:
DFL: High-Performance Blockchain-Based Federated Learning. Distributed Ledger Technol. Res. Pract. 2(3): 1-25 (2023) - [c128]Zaid Al-Ars, Obinna Agba, Zhuoran Guo, Christiaan Boerkamp, Ziyaad Jaber, Tareq Jaber:
NLICE: Synthetic Medical Record Generation for Effective Primary Healthcare Differential Diagnosis. BIBE 2023: 397-402 - [c127]Vinicius Trentin, Chenxu Ma, Jorge Villagra, Zaid Al-Ars:
Learning-enabled multi-modal motion prediction in urban environments. IV 2023: 1-7 - [c126]Casper Cromjongh, Yongding Tian, H. Peter Hofstee, Zaid Al-Ars:
Tydi-Chisel: Collaborative and Interface-Driven Data-Streaming Accelerators. NorCAS 2023: 1-7 - [c125]Anna M. Krol, Koen Mesman, Aritra Sarkar, Zaid Al-Ars:
Efficient Parameterised Compilation for Hybrid Quantum Programming. QCE 2023: 103-111 - [c124]Yongding Tian, Matthijs A. Reukers, Zaid Al-Ars, H. Peter Hofstee, Matthijs Brobbel, Johan Peltenburg, Jeroen van Straten:
Tydi-lang: A Language for Typed Streaming Hardware. SC Workshops 2023: 520-529 - [c123]Zaid Al-Ars, Jakoba Petri-Koenig, Joost Hoozemans, Luc Dierick, H. Peter Hofstee:
OctoRay: Framework for Scalable FPGA Cluster Acceleration of Python Big Data Applications. SC Workshops 2023: 539-546 - [c122]Matthijs A. Reukers, Yongding Tian, Zaid Al-Ars, H. Peter Hofstee, Matthijs Brobbel, Johan Peltenburg, Jeroen van Straten:
An Intermediate Representation for Composable Typed Streaming Dataflow Designs. VLDB Workshops 2023 - [i29]Seongyeon Park, Hajin Kim, Tanveer Ahmad, Nauman Ahmed, Zaid Al-Ars, H. Peter Hofstee, Youngsok Kim, Jinho Lee:
SaLoBa: Maximizing Data Locality and Workload Balance for Fast Sequence Alignment on GPUs. CoRR abs/2301.09310 (2023) - [i28]Vinicius Trentin, Chenxu Ma, Jorge Villagra, Zaid Al-Ars:
Learning-enabled multi-modal motion prediction in urban environments. CoRR abs/2304.11764 (2023) - [i27]Matthijs A. Reukers, Yongding Tian, Zaid Al-Ars, H. Peter Hofstee, Matthijs Brobbel, Johan Peltenburg, Jeroen van Straten:
An Intermediate Representation for Composable Typed Streaming Dataflow Designs. CoRR abs/2308.13436 (2023) - 2022
- [j27]Lukas Breitwieser, Ahmad Hesam, Jean de Montigny, Vasileios Vavourakis, Alexandros Iosif, Jack Jennings, Marcus Kaiser, Marco Manca, Alberto Di Meglio, Zaid Al-Ars, Fons Rademakers, Onur Mutlu, Roman Bauer:
BioDynaMo: a modular platform for high-performance agent-based simulation. Bioinform. 38(2): 453-460 (2022) - [c121]Aritra Sarkar, Zaid Al-Ars, Koen Bertels:
QKSA: Quantum Knowledge Seeking Agent. AGI 2022: 384-393 - [c120]Baozhou Zhu, H. Peter Hofstee, Jinho Lee, Zaid Al-Ars:
Improving Gradient Paths for Binary Convolutional Neural Networks. BMVC 2022: 281 - [c119]David Enthoven, Zaid Al-Ars:
Fidel: Reconstructing Private Training Samples from Weight Updates in Federated Learning. IOTSMS 2022: 1-8 - [c118]Robin Abrahamse, Ákos Hadnagy, Zaid Al-Ars:
Memory-Disaggregated In-Memory Object Store Framework for Big Data Applications. IPDPS Workshops 2022: 1-7 - [c117]Seongyeon Park, Hajin Kim, Tanveer Ahmad, Nauman Ahmed, Zaid Al-Ars, H. Peter Hofstee, Youngsok Kim, Jinho Lee:
SALoBa: Maximizing Data Locality and Workload Balance for Fast Sequence Alignment on GPUs. IPDPS 2022: 728-738 - [c116]Tanveer Ahmad, Chengxin Ma, Zaid Al-Ars, H. Peter Hofstee:
Communication-Efficient Cluster Scalable Genomics Data Processing Using Apache Arrow Flight. ISPDC 2022: 138-146 - [i26]C. V. Vletter, H. L. Burger, Hani Alers, N. Sourlos, Zaid Al-Ars:
Towards an Automatic Diagnosis of Peripheral and Central Palsy Using Machine Learning on Facial Features. CoRR abs/2201.11852 (2022) - [i25]Tanveer Ahmad, Zaid Al-Ars, H. Peter Hofstee:
Benchmarking Apache Arrow Flight - A wire-speed protocol for data transfer, querying and microservices. CoRR abs/2204.03032 (2022) - [i24]Robin Abrahamse, Ákos Hadnagy, Zaid Al-Ars:
Memory-Disaggregated In-Memory Object Store Framework for Big Data Applications. CoRR abs/2204.12889 (2022) - [i23]Huub Donkers, Koen Mesman, Zaid Al-Ars, Matthias Möller:
QPack Scores: Quantitative performance metrics for application-oriented quantum computer benchmarking. CoRR abs/2205.12142 (2022) - [i22]Yongding Tian, Matthijs A. Reukers, Zaid Al-Ars, H. Peter Hofstee, Matthijs Brobbel, Johan Peltenburg, Jeroen van Straten:
Tydi-lang: A Language for Typed Streaming Hardware. CoRR abs/2212.06259 (2022) - [i21]Yongding Tian, Zaid Al-Ars, H. Peter Hofstee:
Tydi-lang: a language for typed streaming hardware - A manual for future Tydi-lang compiler developers. CoRR abs/2212.11154 (2022) - [i20]Matthijs A. Reukers, H. Peter Hofstee, Zaid Al-Ars:
A Toolchain for Streaming Dataflow Accelerator Designs for Big Data Analytics: Defining an IR for Composable Typed Streaming Dataflow Designs. CoRR abs/2212.12003 (2022) - 2021
- [j26]Carlo Sau, Claudia Rinaldi, Luigi Pomante, Francesca Palumbo, Giacomo Valente, Tiziana Fanni, Marcos Martinez de Alejandro, Frank van der Linden, Twan Basten, Marc Geilen, Geran Peeren, Jirí Kadlec, Pekka Jääskeläinen, Lubomír Bulej, Francisco Barranco, Jukka Saarinen, Tero Säntti, Maria Katiuscia Zedda, Victor Sanchez, Shayan Tabatabaei Nikkhah, Dip Goswami, Guillermo Amat, Lukás Marsík, Mark van Helvoort, Luis Medina, Zaid Al-Ars, Ad de Beer:
Design and management of image processing pipelines within CPS: Acquired experience towards the end of the FitOptiVis ECSEL Project. Microprocess. Microsystems 87: 104350 (2021) - [j25]Johan Peltenburg, Jeroen van Straten, Matthijs Brobbel, Zaid Al-Ars, H. Peter Hofstee:
Generating High-Performance FPGA Accelerator Designs for Big Data Analytics with Fletcher and Apache Arrow. J. Signal Process. Syst. 93(5): 565-586 (2021) - [c115]Johan Peltenburg, Ákos Hadnagy, Matthijs Brobbel, Robert Morrow, Zaid Al-Ars:
Tens of gigabytes per second JSON-to-Arrow conversion with FPGA accelerators. FPT 2021: 1-9 - [c114]Baozhou Zhu, H. Peter Hofstee, Jinho Lee, Zaid Al-Ars:
An Attention Module for Convolutional Neural Networks. ICANN (1) 2021: 167-178 - [c113]Joost Hoozemans, Kati Tervo, Pekka Jääskeläinen, Zaid Al-Ars:
Energy Efficient Multistandard Decompressor ASIP. ICCDE 2021: 14-19 - [c112]Baozhou Zhu, H. Peter Hofstee, Johan Peltenburg, Jinho Lee, Zaid Al-Ars:
AutoReCon: Neural Architecture Search-based Reconstruction for Data-free Compression. IJCAI 2021: 3470-3476 - [c111]Jianyu Chen, Maurice Daverveldt, Zaid Al-Ars:
FPGA Acceleration of Zstd Compression Algorithm. IPDPS Workshops 2021: 188-191 - [c110]Ahmad Hesam, Lukas Breitwieser, Fons Rademakers, Zaid Al-Ars:
GPU Acceleration of 3D Agent-Based Biological Simulations. IPDPS Workshops 2021: 210-217 - [c109]Petros Arvanitis, Jan-Harm L. F. Betting, Laurens W. J. Bosman, Zaid Al-Ars, Christos Strydis:
WhiskEras 2.0: Fast and Accurate Whisker Tracking in Rodents. SAMOS 2021: 210-225 - [i19]David Enthoven, Zaid Al-Ars:
Fidel: Reconstructing Private Training Samples from Weight Updates in Federated Learning. CoRR abs/2101.00159 (2021) - [i18]Anna M. Krol, Aritra Sarkar, Imran Ashraf, Zaid Al-Ars, Koen Bertels:
Efficient decomposition of unitary matrices in quantum circuit compilers. CoRR abs/2101.02993 (2021) - [i17]Koen Mesman, Zaid Al-Ars, Matthias Möller:
QPack: Quantum Approximate Optimization Algorithms as universal benchmark for quantum computers. CoRR abs/2103.17193 (2021) - [i16]Ahmad Hesam, Lukas Breitwieser, Fons Rademakers, Zaid Al-Ars:
GPU Acceleration of 3D Agent-Based Biological Simulations. CoRR abs/2105.00039 (2021) - [i15]Baozhou Zhu, H. Peter Hofstee, Johan Peltenburg, Jinho Lee, Zaid Al-Ars:
AutoReCon: Neural Architecture Search-based Reconstruction for Data-free Compression. CoRR abs/2105.12151 (2021) - [i14]Baozhou Zhu, H. Peter Hofstee, Jinho Lee, Zaid Al-Ars:
An Attention Module for Convolutional Neural Networks. CoRR abs/2108.08205 (2021) - [i13]Yongding Tian, Zhuoran Guo, Jiaxuan Zhang, Zaid Al-Ars:
DFL: High-Performance Blockchain-Based Federated Learning. CoRR abs/2110.15457 (2021) - [i12]Aritra Sarkar, Zaid Al-Ars, Harshitta Gandhi, Koen Bertels:
QKSA: Quantum Knowledge Seeking Agent - resource-optimized reinforcement learning using quantum process tomography. CoRR abs/2112.03643 (2021) - 2020
- [j24]Rene Miedema, Georgios Smaragdos, Mario Negrello, Zaid Al-Ars, Matthias Möller, Christos Strydis:
flexHH: A Flexible Hardware Library for Hodgkin-Huxley-Based Neural Simulations. IEEE Access 8: 121905-121919 (2020) - [j23]Baozhou Zhu, Zaid Al-Ars, H. Peter Hofstee:
REAF: Reducing Approximation of Channels by Reducing Feature Reuse Within Convolution. IEEE Access 8: 169957-169965 (2020) - [j22]Nauman Ahmed, Tong Dong Qiu, Koen Bertels, Zaid Al-Ars:
GPU acceleration of Darwin read overlapper for de novo assembly of long DNA reads. BMC Bioinform. 21-S(13): 388 (2020) - [j21]Tanveer Ahmad, Nauman Ahmed, Zaid Al-Ars, H. Peter Hofstee:
Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework. BMC Genom. 21(S-10) (2020) - [j20]Johan Peltenburg, Jeroen van Straten, Matthijs Brobbel, Zaid Al-Ars, H. Peter Hofstee:
Tydi: An Open Specification for Complex Data Structures Over Hardware Streams. IEEE Micro 40(4): 120-130 (2020) - [j19]Michiel A. van der Vlag, Georgios Smaragdos, Zaid Al-Ars, Christos Strydis:
Exploring Complex Brain-Simulation Workloads on Multi-GPU Deployments. ACM Trans. Archit. Code Optim. 16(4): 53:1-53:25 (2020) - [j18]Jian Fang, Jianyu Chen, Jinho Lee, Zaid Al-Ars, H. Peter Hofstee:
An Efficient High-Throughput LZ77-Based Decompressor in Reconfigurable Logic. J. Signal Process. Syst. 92(9): 931-947 (2020) - [c108]Luigi Pomante, Francesca Palumbo, Claudia Rinaldi, Giacomo Valente, Carlo Sau, Tiziana Fanni, Frank van der Linden, Twan Basten, Marc Geilen, Geran Peeren, Jirí Kadlec, Pekka Jääskeläinen, Marcos Martinez de Alejandro, Jukka Saarinen, Tero Säntti, Maria Katiuscia Zedda, Victor Sanchez, Dip Goswami, Zaid Al-Ars, Ad de Beer:
Design and management of image processing pipelines within CPS: 2 years of experience from the FitOptiVis ECSEL Project. DSD 2020: 378-385 - [c107]Baozhou Zhu, Zaid Al-Ars, Wei Pan:
Towards Lossless Binary Convolutional Neural Networks Using Piecewise Approximation. ECAI 2020: 1730-1737 - [c106]Rene Miedema, Georgios Smaragdos, Mario Negrello, Zaid Al-Ars, Matthias Möller, Christos Strydis:
Synthesis-Free, Flexible and Fast Hardware Library for Biophysically Plausible Neurosimulations. FPGA 2020: 319 - [c105]Nauman Ahmed, Koen Bertels, Zaid Al-Ars:
Efficient GPU Acceleration for Computing Maximal Exact Matches in Long DNA Reads. ICBBB 2020: 28-34 - [c104]Johan Peltenburg, Lars T. J. van Leeuwen, Joost Hoozemans, Jian Fang, Zaid Al-Ars, H. Peter Hofstee:
Battling the CPU Bottleneck in Apache Parquet to Arrow Conversion Using FPGA. FPT 2020: 281-286 - [c103]Baozhou Zhu, Zaid Al-Ars, H. Peter Hofstee:
NASB: Neural Architecture Search for Binary Convolutional Neural Networks. IJCNN 2020: 1-8 - [c102]Jan-Harm L. F. Betting, Vincenzo Romano, Laurens W. J. Bosman, Zaid Al-Ars, Chris I. De Zeeuw, Christos Strydis:
Stairway to Abstraction: an Iterative Algorithm for Whisker Detection in Video Frames. LASCAS 2020: 1-4 - [c101]Lennart Noordsij, Steven van der Vlugt, Mohamed A. Bamakhrama, Zaid Al-Ars, Peter Lindstrom:
Parallelization of Variable Rate Decompression through Metadata. PDP 2020: 245-252 - [i11]David Enthoven, Zaid Al-Ars:
An Overview of Federated Deep Learning Privacy Attacks and Defensive Strategies. CoRR abs/2004.04676 (2020) - [i10]Aritra Sarkar, Zaid Al-Ars, Koen Bertels:
QuASeR - Quantum Accelerated De Novo DNA Sequence Reconstruction. CoRR abs/2004.05078 (2020) - [i9]Paul Bakker, Henk-Jan Boele, Zaid Al-Ars, Christos Strydis:
Real-Time Face and Landmark Localization for Eyeblink Detection. CoRR abs/2006.00816 (2020) - [i8]Aritra Sarkar, Zaid Al-Ars, Koen Bertels:
Quantum Accelerated Estimation of Algorithmic Information. CoRR abs/2006.00987 (2020) - [i7]Lukas Breitwieser, Ahmad Hesam, Jean de Montigny, Vasileios Vavourakis, Alexandros Iosif, Jack Jennings, Marcus Kaiser, Marco Manca, Alberto Di Meglio, Zaid Al-Ars, Fons Rademakers, Onur Mutlu, Roman Bauer:
BioDynaMo: an agent-based simulation platform for scalable computational biology research. CoRR abs/2006.06775 (2020) - [i6]Baozhou Zhu, Zaid Al-Ars, H. Peter Hofstee:
NASB: Neural Architecture Search for Binary Convolutional Neural Networks. CoRR abs/2008.03515 (2020) - [i5]Baozhou Zhu, Zaid Al-Ars, Wei Pan:
Towards Lossless Binary Convolutional Neural Networks Using Piecewise Approximation. CoRR abs/2008.03520 (2020) - [i4]Baozhou Zhu, H. Peter Hofstee, Jinho Lee, Zaid Al-Ars:
SoFAr: Shortcut-based Fractal Architectures for Binary Convolutional Neural Networks. CoRR abs/2009.05317 (2020) - [i3]Stefan Zwaard, Henk-Jan Boele, Hani Alers, Christos Strydis, Casey Lew-Williams, Zaid Al-Ars:
Privacy-Preserving Object Detection & Localization Using Distributed Machine Learning: A Case Study of Infant Eyeblink Conditioning. CoRR abs/2010.07259 (2020)
2010 – 2019
- 2019
- [j17]Nauman Ahmed, Jonathan Levy, Shanshan Ren, Hamid Mushtaq, Koen Bertels, Zaid Al-Ars:
GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data. BMC Bioinform. 20(1): 520:1-520:20 (2019) - [j16]Nauman Ahmed, Jonathan Levy, Shanshan Ren, Hamid Mushtaq, Koen Bertels, Zaid Al-Ars:
Correction to: GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data. BMC Bioinform. 20(1): 597:1-597:4 (2019) - [j15]Shanshan Ren, Nauman Ahmed, Koen Bertels, Zaid Al-Ars:
GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller. BMC Genom. 20(S2) (2019) - [j14]Mahroo Zandrahimi, Philippe Debaud, Armand Castillejo, Zaid Al-Ars:
Evaluation of the Impact of Technology Scaling on Delay Testing for Low-Cost AVS. J. Electron. Test. 35(3): 303-315 (2019) - [j13]Zaid Al-Ars, Steven van der Vlugt, Pekka Jääskeläinen, Frank van der Linden:
ALMARVI System Solution for Image and Video Processing in Healthcare, Surveillance and Mobile Applications. J. Signal Process. Syst. 91(1): 1-7 (2019) - [j12]Joost Hoozemans, Rob de Jong, Steven van der Vlugt, Jeroen van Straten, Uttam Kumar Elango, Zaid Al-Ars:
Frame-based Programming, Stream-Based Processing for Medical Image Processing Applications. J. Signal Process. Syst. 91(1): 47-59 (2019) - [j11]Joost Hoozemans, Jeroen van Straten, Timo Viitanen, Aleksi Tervo, Jiri Kadlec, Zaid Al-Ars:
ALMARVI Execution Platform: Heterogeneous Video Processing SoC Platform on FPGA. J. Signal Process. Syst. 91(1): 61-73 (2019) - [c100]Johan Peltenburg, Jeroen van Straten, Matthijs Brobbel, H. Peter Hofstee, Zaid Al-Ars:
Supporting Columnar In-memory Formats on FPGA: The Hardware Design of Fletcher for Apache Arrow. ARC 2019: 32-47 - [c99]Jian Fang, Jianyu Chen, Jinho Lee, Zaid Al-Ars, H. Peter Hofstee:
Refine and Recycle: A Method to Increase Decompression Parallelism. ASAP 2019: 272-280 - [c98]Zaid Al-Ars, Twan Basten, Ad de Beer, Marc Geilen, Dip Goswami, Pekka Jääskeläinen, Jirí Kadlec, Marcos Martinez de Alejandro, Francesca Palumbo, Geran Peeren, Luigi Pomante, Frank van der Linden, Jukka Saarinen, Tero Säntti, Carlo Sau, Maria Katiuscia Zedda:
The FitOptiVis ECSEL project: highly efficient distributed embedded image/video processing in cyber-physical systems. CF 2019: 333-338 - [c97]Jian Fang, Jianyu Chen, Jinho Lee, Zaid Al-Ars, H. Peter Hofstee:
A Fine-Grained Parallel Snappy Decompressor for FPGAs Using a Relaxed Execution Model. FCCM 2019: 335 - [c96]Johan Peltenburg, Jeroen van Straten, Lars Wijtemans, Lars van Leeuwen, Zaid Al-Ars, H. Peter Hofstee:
Fletcher: A Framework to Efficiently Integrate FPGA Accelerators with Apache Arrow. FPL 2019: 270-277 - [i2]Aritra Sarkar, Zaid Al-Ars, Carmen G. Almudéver, Koen Bertels:
An algorithm for DNA read alignment on quantum accelerators. CoRR abs/1909.05563 (2019) - 2018
- [j10]Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars:
Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths. Comput. Biol. Chem. 75: 54-64 (2018) - [c95]Joost Hoozemans, Jeroen van Straten, Zaid Al-Ars, Stephan Wong:
Evaluating Auto-adaptation Methods for Fine-Grained Adaptable Processors. ARCS 2018: 255-268 - [c94]Shanshan Ren, Nauman Ahmed, Koen Bertels, Zaid Al-Ars:
An Efficient GPU-Based de Bruijn Graph Construction Algorithm for Micro-Assembly. BIBE 2018: 67-72 - [c93]Ernst Joachim Houtgast, Vlad Mihai Sima, Koen Bertels, Zaid Al-Ars:
Comparative Analysis of System-Level Acceleration Techniques in Bioinformatics: A Case Study of Accelerating the Smith-Waterman Algorithm for BWA-MEM. BIBE 2018: 243-246 - [c92]Jian Fang, Jianyu Chen, Zaid Al-Ars, H. Peter Hofstee, Jan Hidders:
A high-bandwidth snappy decompressor in reconfigurable logic: work-in-progress. CODES+ISSS 2018: 16 - [c91]Mahroo Zandrahimi, Philippe Debaud, Armand Castillejo, Zaid Al-Ars:
Industrial evaluation of transition fault testing for cost effective offline adaptive voltage scaling. DATE 2018: 289-292 - [c90]Mahroo Zandrahimi, Philippe Debaud, Armand Castillejo, Zaid Al-Ars:
An industrial case study of low cost adaptive voltage scaling using delay test patterns. DATE 2018: 999-1000 - [c89]Mahroo Zandrahimi, Philippe Debaud, Armand Castillejo, Zaid Al-Ars:
Cost Effective Adaptive Voltage Scaling Using Path Delay Fault Testing. EWDTS 2018: 1-6 - [c88]Parag Bhosale, Marius Staring, Zaid Al-Ars, Floris F. Berendsen:
GPU-based stochastic-gradient optimization for non-rigid medical image registration in time-critical applications. Image Processing 2018: 105740R - [c87]Nagarajan Kathiresan, Rashid Al-Ali, Puthen V. Jithesh, Ganesan Narayanasamy, Zaid Al-Ars:
Porting and Benchmarking of BWAKIT Pipeline on OpenPOWER Architecture. ISC Workshops 2018: 402-410 - 2017
- [c86]Joost Hoozemans, Rolf Heij, Jeroen van Straten, Zaid Al-Ars:
VLIW-Based FPGA Computation Fabric with Streaming Memory Hierarchy for Medical Imaging Applications. ARC 2017: 36-43 - [c85]Hamid Mushtaq, Frank Liu, Carlos Costa, Gang Liu, H. Peter Hofstee, Zaid Al-Ars:
SparkGA: A Spark Framework for Cost Effective, Fast and Accurate DNA Analysis at Scale. BCB 2017: 148-157 - [c84]Nauman Ahmed, Koen Bertels, Zaid Al-Ars:
Predictive Genome Analysis Using Partial DNA Sequencing Data. BIBE 2017: 119-124 - [c83]Hamid Mushtaq, Nauman Ahmed, Zaid Al-Ars:
Streaming Distributed DNA Sequence Alignment Using Apache Spark. BIBE 2017: 188-193 - [c82]Ernst Houtgast, Vlad Mihai Sima, Zaid Al-Ars:
High Performance Streaming Smith-Waterman Implementation with Implicit Synchronization on Intel FPGA using OpenCL. BIBE 2017: 492-496 - [c81]Shanshan Ren, Koen Bertels, Zaid Al-Ars:
GPU-Accelerated GATK HaplotypeCaller with Load-Balanced Multi-Process Optimization. BIBE 2017: 497-502 - [c80]Nauman Ahmed, Hamid Mushtaq, Koen Bertels, Zaid Al-Ars:
GPU accelerated API for alignment of genomics sequencing data. BIBM 2017: 510-515 - [c79]Mahroo Zandrahimi, Philippe Debaud, Armand Castillejo, Zaid Al-Ars:
Using transition fault test patterns for cost effective offline performance estimation. DTIS 2017: 1-5 - [c78]Yang Ma, Prajith Ramakrishnan Geethakumari, Georgios Smaragdos, Sander Lindeman, Vincenzo Romano, Mario Negrello, Ioannis Sourdis, Laurens W. J. Bosman, Chris I. De Zeeuw, Zaid Al-Ars, Christos Strydis:
Towards real-time whisker tracking in rodents for studying sensorimotor disorders. SAMOS 2017: 137-145 - [c77]Johan Peltenburg, Ahmad Hesam, Zaid Al-Ars:
Pushing Big Data into Accelerators: Can the JVM Saturate Our Hardware? ISC Workshops 2017: 220-236 - 2016
- [j9]