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BIBM 2016: Shenzhen, China
- Tianhai Tian, Qinghua Jiang, Yunlong Liu, Kevin Burrage, Jiangning Song, Yadong Wang, Xiaohua Hu, Shinichi Morishita, Qian Zhu, Guohua Wang:
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2016, Shenzhen, China, December 15-18, 2016. IEEE Computer Society 2016, ISBN 978-1-5090-1611-2 - Yadong Wang, Kevin Burrage, Yunlong Liu, Shinichi Morishita
, Tianhai Tian
, Qinghua Jiang, Jiangning Song
, Guohua Wang, Qian Zhu, Xiaohua Tony Hu:
Preface. 1-2 - Bin Hu:
Computational psychophysiology based research methodology for mental health. 1 - Yi-Xue Li:
Whole genome sequencing of disease animal models. 2 - David Rand:
Information and decision-making in dynamic cell signaling. 3 - Aidong Zhang:
Trajectory analysis - Linking genomic and proteomic data with disease progression. 4 - Jun Huan:
Deep-Learning: Investigating feed-forward deep Neural Networks for modeling high throughput chemical bioactivity data. 5 - Sun Kim:
Networks and models for the integrated analysis of multi omics data. 6 - Shaoliang Peng:
High performance computational biology and drug design on TianHe Supercomputers. 7 - Habtom W. Resson:
Multi-omic approaches for liver cancer biomarker discovery. 8 - Chi-Ren Shyu:
Semi-hypothesis guided exploratory analysis for biomedical applications. 9 - Kai Tan:
Computational tools for studying gene regulation in the 3-dimensional genome. 10 - Xiangdong Wang:
Clinical application of precision medicine: Zhongshan Hospital strategy. 11 - Hector Zenil:
An algorithmic-information calculus for reprogramming biological networks. 12 - Ziyi Guo, Brian Yuan Chen:
A map of binding cavity conformations reveals differences in binding specificity. 13-19 - Yang Hu
, Meng Zhou, Hongbo Shi, Hong Ju, Qinghua Jiang, Liang Cheng:
InfDisSim: A novel method for measuring disease similarity based on information flow. 20-26 - Wei Lan
, Jianxin Wang, Min Li, Chengqian Lu
, Fang-Xiang Wu
, Yi Pan
:
Predicting microRNA-environmental factor interactions based on bi-random walk and multi-label learning. 27-32 - Nathan LaPierre, Mohammad Arifur Rahman, Huzefa Rangwala:
CAMIL: Clustering and Assembly with Multiple Instance Learning for phenotype prediction. 33-40 - Rongjian Li, Dong Si, Tao Zeng, Shuiwang Ji
, Jing He:
Deep convolutional neural networks for detecting secondary structures in protein density maps from cryo-electron microscopy. 41-46 - Diwei Liu, Yongjun Tang, Chao Fan, Zhigang Chen, Lei Deng:
PredRBR: Accurate Prediction of RNA-Binding Residues in proteins using Gradient Tree Boosting. 47-52 - Quan Zou
, Shixiang Wan, Xiangxiang Zeng
:
HPTree: Reconstructing phylogenetic trees for ultra-large unaligned DNA sequences via NJ model and Hadoop. 53-58 - Haobin Yao, Tak Wah Lam
, Hing-Fung Ting, Siu-Ming Yiu, Yadong Wang, Bo Liu:
Accurate annotation of metagenomic data without species-level references. 59-64 - Yuehua Zhang, Pengfei Xuan, Yunsheng Wang, Pradip K. Srimani, Feng Luo:
A de novo genome assembler based on MapReduce and bi-directed de Bruijn graph. 65-71 - Xiaodong Zhang, Chong Chu, Yao Zhang, Yufeng Wu, Jingyang Gao:
Concod: Accurate consensus-based approach of calling deletions from high-throughput sequencing data. 72-77 - Jiyun Zhou, Qin Lu
, Ruifeng Xu, Lin Gui
, Hongpeng Wang:
CNNsite: Prediction of DNA-binding residues in proteins using Convolutional Neural Network with sequence features. 78-85 - Lin Zhu, Ning Li, Wenzheng Bao, De-Shuang Huang:
Learning regulatory motifs by direct optimization of Fisher Exact Test Score. 86-91 - Richard Beal, Aliya Farheen, Don Adjeroh:
Compressing genome resequencing data via the Maximal Longest Factor. 92-97 - Sourya Bhattacharyya
, Jayanta Mukhopadhyay:
COSPEDTree-II: Improved couplet based phylogenetic supertree. 98-101 - Keke Chen, Venkata Sai Abhishek Gogu, Di Wu, Jiang Ning:
COLT: COnstrained Lineage Tree Generation from sequence data. 102-106 - Ye-tian Fan, Xiaohua Hu, Xiwei Tang, Qing Ping, Wei Wu:
A novel algorithm for identifying essential proteins by integrating subcellular localization. 107-110 - Huiqiang Jia, Haicho Wei, Daming Zhu, Jingjing Ma, Hai Yang, Ruizhi Wang, Xianzhong Feng
:
Mining structural variants of Heduo12 using paired-end reads. 111-115 - Xiaoyang Jing, Qiwen Dong:
Improved protein residue-residue contacts prediction using learning-to-rank. 116-121 - Mehdi Kchouk, Mourad Elloumi:
Hybrid error correction approach and de novo assembly for minion sequencing long reads. 122-125 - Jin Seob Kim, Gregory S. Chirikjian:
Symmetrical rigid body parameterization for biomolecular structures. 126-131 - Xiao-Bo Li, Forbes J. Burkowski, Henry Wolkowicz:
Semidefinite facial reduction and rigid cluster elastic network interpolation of protein structures. 132-136 - Natasha Pavlovikj, Kevin Begcy
, Sairam Behera, Malachy Campbell, Harkamal Walia, Jitender S. Deogun:
Analysis of transcriptome assembly pipelines for wheat. 137-140 - Renjie Tan
, Jixuan Wang, Xiaoliang Wu, Guoqiang Wan, Rongjie Wang, Rui Ma, Zhijie Han
, Wenyang Zhou, Shuilin Jin, Qinghua Jiang, Yadong Wang:
ERDS-pe: A paired hidden Markov model for copy number variant detection from whole-exome sequencing data. 141-144 - Amirhossein Tavanaei, Anthony S. Maida, Arun Kaniymattam, Rasiah Loganantharaj:
Towards recognition of protein function based on its structure using deep convolutional networks. 145-149 - Michael Zabejansky, Haim J. Wolfson:
Accelerating protein-protein complex validation by GPU based funnel generation. 150-155 - Changsheng Zhang, Hongmin Cai
, Jingying Huang, Bo Xu:
Multi-norm constrained optimization methods for calling copy number variants in single cell sequencing data. 156-160 - Jin Zhao, Haodi Feng:
Estimating isoform abundance by Particle Swarm Optimization. 161-166 - Ao Zhou, Yadong Wang
, Yunlong Liu, Weixing Feng, Howard J. Edenberg:
Characterizing the roles of long non-coding RNA in rat alcohol preference. 167-173 - Zicheng Zhao, Yen Kaow Ng
, Xiaodong Fang, Shuaicheng Li
:
Eliminating heterozygosity from reads through coverage normalization. 174-177 - Hamid Reza Hassanzadeh, May D. Wang
:
DeeperBind: Enhancing prediction of sequence specificities of DNA binding proteins. 178-183 - Hamid Reza Hassanzadeh, John H. Phan, May D. Wang
:
A multi-modal graph-based semi-supervised pipeline for predicting cancer survival. 184-189 - Gianfranco Politano, F. Logrand, M. Brancaccio, Stefano Di Carlo
:
A computationally inferred regulatory heart aging model including post-transcriptional regulations. 190-197 - Haiying Wang
, Huiru Zheng
, Fiona Browne
, Rainer Roehe
, Richard J. Dewhurst, Felix Engel
, Matthias L. Hemmje, Paul Walsh:
Analysis of rumen microbial community in cattle through the integration of metagenomic and network-based approaches. 198-203 - Minkun Wang, Cristina Di Poto, Alessia Ferrarini
, Guoqiang Yu, Habtom W. Ressom:
Metabolomic data deconvolution using probabilistic purification models. 204-209 - Ou Wei, Zonghao Guo, Yun Niu, Wenyuan Liao
:
Optimal control for context-sensitive probabilistic Boolean networks with perturbation using probabilisitic model checking. 210-216 - Jiangyong Wei, Xiaohua Hu, Xiufen Zou, Tianhai Tian
:
Inference of genetic regulatory network for stem cell using single cells expression data. 217-222 - Guangsheng Wu, Juan Liu, Caihua Wang:
Semi-supervised graph cut algorithm for drug repositioning by integrating drug, disease and genomic associations. 223-228 - Lin Wu, Lingkai Tang, Min Li, Jianxin Wang, Fang-Xiang Wu
:
The MSS of complex networks with centrality based preference and its application to biomolecular networks. 229-234 - Linlin Xing, Maozu Guo, Xiaoyan Liu, Chun-yu Wang, Lei Wang, Yin Zhang:
Reconstructing gene regulatory network based on candidate auto selection method. 235-241 - Yang Yang, Tianyu Cao, Wei Kong:
Feature selection based on functional group structure for microRNA expression data analysis. 242-247 - Xinran Yu, Hao Zhang, Timothy G. Lilburn, Hong Cai, Jianying Gu, Turgay Korkmaz, Yufeng Wang:
Just-in-time expression of influential genes in the cellular networks of the malaria parasite Plasmodium falciparum during the red blood cycle. 248-253 - Wen Zhang
, Xiaopeng Zhu
, Yu Fu, Junko Tsuji, Zhiping Weng:
The prediction of human splicing branchpoints by multi-label learning. 254-259 - Yue Zhao, Tham H. Hoang, Pujan Joshi, Seung-Hyun Hong, Dong-Guk Shin:
Deep pathway analysis incorporating mutation information and gene expression data. 260-265 - Morteza Zihayat, Heidar Davoudi, Aijun An:
Top-k utility-based gene regulation sequential pattern discovery. 266-273 - Wenzheng Bao, Lin Zhu, De-Shuang Huang:
ILSES: Identification lysine succinylation-sites with ensemble classification. 274-277 - Jiachun Han, Jiang Shu
, Juan Cui:
A new system for human microRNA functional evaluation and network. 278-283 - Marc Legeay
, Béatrice Duval, Jean-Pierre Renou:
Inference and differential analysis of Extended Core Networks: A way to study anti-sense regulation. 284-287 - Tianle Ma
, Aidong Zhang:
A framework for robust differential network modular structure discovery from RNA-seq data. 288-293 - Jake Y. Chen
, Zongliang Yue
, Michael T. Neylon, Thanh Nguyen
, Nafisa Bulsara, Itika Arora, Timothy Ratliff:
Towards constructing "Super Gene Sets" regulatory networks. 294-298 - Wei Peng, Wei Lan
, Jianxin Wang, Yi Pan
:
Predicting microRNA-disease associations by walking on four biological networks. 299-302 - Bo Song, Jianliang Gao, Weimao Ke, Xiaohua Hu:
Achieving high k-coverage and k-consistency in global alignment of multiple PPI networks. 303-307 - Xiwei Tang, Xiaohua Hu, Xuejun Yang, Yuan Sun:
A algorithm for identifying disease genes by incorporating the subcellular localization information into the protein-protein interaction networks. 308-311 - Rency S. Varghese, Yiming Zuo, Yi Zhao, Yong-Wei Zhang
, Sandra A. Jablonski, Mariaelena Pierobon, Emanuel F. Petricoin, Habtom W. Ressom, Louis M. Weiner:
Network-based analysis of reverse phase protein array data. 312-317 - Cuicui Yang, Junzhong Ji, Aidong Zhang:
Bacterial biological mechanisms for functional module detection in PPI networks. 318-323 - Kouki Yonezawa, Tsukasa Mori, Shuichi Shigeno, Atsushi Ogura:
DASE: Condition-specific differential alternative splicing variants estimation method without reference genome sequence, and its application to non-model organisms. 324-329 - Yi Zhang, Xinan Liu, James N. MacLeod, Jinze Liu:
DeepSplice: Deep classification of novel splice junctions revealed by RNA-seq. 330-333 - Ashis Kumer Biswas
, Dong-Chul Kim, Mingon Kang, Jean X. Gao:
Robust Inductive Matrix Completion strategy to explore associations between lincRNAs and human disease phenotypes. 334-339 - Hao Feng, Yaxin Peng, Guixu Zhang, Chaomin Shen:
Joint distribution adaptation based TSK Fuzzy logic system for epileptic EEG signal identification. 340-345 - Qi Li, Yongyi Gong:
A shape model for contour extraction of Drosophila embryos. 346-351 - Xiang Li
, Dawei Song, Peng Zhang, Guangliang Yu, Yuexian Hou, Bin Hu:
Emotion recognition from multi-channel EEG data through Convolutional Recurrent Neural Network. 352-359 - Jinduo Liu, Junzhong Ji, Aidong Zhang, Peipeng Liang:
An ant colony optimization algorithm for learning brain effective connectivity network from fMRI data. 360-367 - Bo-Wen Liu, Jun-Wei Mao, Ye-Jun Shi, Qin-Chi Lu, Pei-Ji Liang, Pu-Ming Zhang:
Analyzing epileptic network dynamics via time-variant partial directed coherence. 368-374 - Xingzheng Lyu
, Qifan Yang, Shunren Xia, Sanyuan Zhang:
Construction of retinal vascular trees via curvature orientation prior. 375-382 - Shaswati Roy, Pradipta Maji
:
A modified rough-fuzzy clustering algorithm with spatial information for HEp-2 cell image segmentation. 383-388 - Hong Song, Iordachescu Ilie Mihaita Bogdan, Shuliang Wang
, Wentian Dong, Wenxiang Quan, Weimin Dang, Xin Yu:
Automatic schizophrenia discrimination on fNIRS by using PCA and SVM. 389-394 - Cong Tan, Zhengrui Zhang, Xuan Yang, JianBing Yi:
Cardiac image registration by combining point set matching with surface structure features. 395-402 - Xiaoqin Tang, Merel van't Hoff, Jerry Hoogenboom, Yuanhao Guo, Fuyu Cai, Gerda Lamers, Fons J. Verbeek:
Fluorescence and bright-field 3D image fusion based on sinogram unification for optical projection tomography. 403-410 - Sheng Wang, Edward W. Huang, Runshun Zhang, Xiaoping Zhang, Baoyan Liu, Xuezhong Zhou
, ChengXiang Zhai:
A conditional probabilistic model for joint analysis of symptoms, diseases, and herbs in traditional Chinese medicine patient records. 411-418 - Liping Wang, Junjie Yao, Wenjie Zhang
:
A time-series similarity method for QRS morphology variation analysis. 419-426 - Wen Zhang
, Yanlin Chen, Shikui Tu, Feng Liu, Qianlong Qu:
Drug side effect prediction through linear neighborhoods and multiple data source integration. 427-434 - Chen Zhang, Tianzhu Liang, Philip K. T. Mok, Weichuan Yu:
FPGA implementation of the coupled filtering method. 435-442 - Yizhe Zhang, Michael T. C. Ying
, Lin Yang, Anil T. Ahuja
, Danny Z. Chen:
Coarse-to-Fine Stacked Fully Convolutional Nets for lymph node segmentation in ultrasound images. 443-448 - Michael Zhou, Daisy Li, Xiaoli Huan, Joseph Manthey, Ekaterina Lioutikova, Hong Zhou:
Mathematical and computational analysis of CRISPR Cas9 sgRNA off-target homologies. 449-454 - Xinliang Zhu, Jiawen Yao
, Guanghua Xiao, Yang Xie, Jaime Rodriguez-Canales, Edwin R. Parra, Carmen Behrens, Ignacio I. Wistuba, Junzhou Huang
:
Imaging-genetic data mapping for clinical outcome prediction via supervised conditional Gaussian graphical model. 455-459 - Seo-Jin Bang, Wei Wu:
Naïve Bayes ensemble: A new approach to classifying unlabeled multi-class asthma subjects. 460-465 - Moumita Bhattacharya, Claudine Jurkovitz
, Hagit Shatkay:
Identifying patterns of associated-conditions through topic models of Electronic Medical Records. 466-469 - Jing Chen, Bin Hu, Yue Wang, Yongqiang Dai, Yuan Yao, Shengjie Zhao:
A three-stage decision framework for multi-subject emotion recognition using physiological signals. 470-474 - Linlin Gao, Haiwei Pan, Jinming Han, Xiaoqin Xie, Zhiqiang Zhang, Xiao Zhai:
Corner detection and matching methods for brain medical image classification. 475-478 - Abhishek Kolagunda, Randall Wisser, Timothy Chaya, Jeffrey Caplan, Chandra Kambhamettu:
Detection of fungal spores in 3D microscopy images of macroscopic areas of host tissue. 479-483 - Yongchun Li, Hong Li, Qian Wang, Chongjun Wang, Xinsheng Fan:
Traditional Chinese Medicine formula evaluation using multi-instance multi-label framework. 484-488 - Yang Li, Zhichao Lian, Min Li, Zhonggeng Liu, Liang Xiao, Zhihui Wei:
ELM-based classification of ADHD patients using a novel local feature extraction method. 489-492 - Zhaohui Liang
, Andrew Powell, Ilker Ersoy
, Mahdieh Poostchi, Kamolrat Silamut, Kannappan Palaniappan, Peng Guo, Md Amir Hossain, Sameer K. Antani, Richard James Maude
, Jimmy Xiangji Huang
, Stefan Jaeger, George R. Thoma:
CNN-based image analysis for malaria diagnosis. 493-496 - Lizhe Liu, Weiting Chen, Guitao Cao:
Prediction of neonatal amplitude-integrated EEG based on LSTM method. 497-500 - Milad Zafar Nezhad, Dongxiao Zhu, Xiangrui Li
, Kai Yang
, Phillip Levy:
SAFS: A deep feature selection approach for precision medicine. 501-506 - Owen Richfield, Md. Ashad Alam, Vince D. Calhoun
, Yu-Ping Wang:
Learning schizophrenia imaging genetics data via Multiple Kernel Canonical Correlation Analysis. 507-511 - Jianyu Shi, Ke Gao, Xue-Qun Shang, Siu-Ming Yiu:
LCM-DS: A novel approach of predicting drug-drug interactions for new drugs via Dempster-Shafer theory of evidence. 512-515 - Shuohong Wang, Xiang Liu, Jingwen Zhao
, Ye Liu, Yan Qiu Chen:
3D tracking swimming fish school using a master view tracking first strategy. 516-519 - Haiying Xia, Shuaifei Deng, Minqi Li, Frank Jiang:
Robust retinal vessel segmentation via clustering-based patch mapping functions. 520-523 - Jundong Yan, Yuanyuan Sun, Yawen Guan, Xiaopeng Hu:
A texture descriptor combining fractal and LBP complex networks. 524 - Yuqun Zeng, Xusheng Liu, Liwei Wang, Hongfang Liu, Yanshan Wang
:
Answering diabetic patients' questions using expert-vetted online resources: A case study. 525-528 - Lu Zhang, Qiuping Pan, Xintao Wu
, Xinghua Shi:
Building Bayesian networks from GWAS statistics based on Independence of Causal Influence. 529-532 - Qinglin Zhao, Bin Hu, Wenhua Lin, Zhixue Li, Hua Jiang, Zhong Xue, Hongqian Li, Quanying Liu:
Nonlinear dynamic analysis of resting EEG alpha activity for heroin addicts. 533-537 - Qian Zhu
, Anirudh Akkati, Pornpoh Hongwattanakul:
Risk feature assessment of readmission for diabetes. 538-543 - Xinliang Zhu, Jiawen Yao
, Junzhou Huang
:
Deep convolutional neural network for survival analysis with pathological images. 544-547 - Michel J. F. Rosa
, Breno Moura, Guilherme Vergara, Lucas Santos, Edward de Oliveira Ribeiro, Maristela Holanda
, Maria Emília Telles Walter
, Aletéia Patrícia Favacho de Araújo
:
BioNimbuZ: A federated cloud platform for bioinformatics applications. 548-555 - Arjun P. Athreya, Alan J. Gaglio, Zbigniew T. Kalbarczyk, Ravishankar K. Iyer, Junmei Cairns, Krishna R. Kalari
, Richard M. Weinshilboum, Liewei Wang:
Unsupervised single-cell analysis in triple-negative breast cancer: A case study. 556-563 - Chuanchao Zhang, Juan Liu, Qianqian Shi, Xiangtian Yu, Tao Zeng, Luonan Chen:
Integration of multiple heterogeneous omics data. 564-569 - Zhimin Deng, Xingan Zhang, Tianhai Tian
:
Copula particle filter algorithm for inferring parameters of regulatory network models with noisy observation data. 570-575 - Liqun Deng, Guowei Huang, Yuzheng Zhuang, Jiansheng Wei, Youliang Yan:
HiGene: A high-performance platform for genomic data analysis. 576-583 - Hao Jiang, Wai-Ki Ching, Yushan Qiu, Xiaoqing Cheng:
Unconstrained optimization in projection method for indefinite SVMs. 584-591 - Lingling Jin, Ian McQuillan, Longhai Li:
Computational identification of regions that influence activity of transposable elements in the human genome. 592-599 - Xiangzhen Kong, Jin-Xing Liu, Chun-Hou Zheng, Mi-Xiao Hou, Yao Lu:
A p-norm singular value decomposition method for robust tumor clustering. 600-605