Volume 25, Number 1, January 2009 Discovery Note - Sequence Analysis
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journals/bioinformatics/Carlson09 Ross P. Carlson :
Decomposition of complex microbial behaviors into resource-based stress responses.
90-97
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journals/bioinformatics/WuLJ09 Xuebing Wu ,
Qifang Liu ,
Rui Jiang :
Align human interactome with phenome to identify causative genes and networks underlying disease families.
98-104
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journals/bioinformatics/YuF09 Data and Text Mining
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journals/bioinformatics/CavillKHLNE09 Applications Note - Genome Analysis
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journals/bioinformatics/Sansom09 Letters to the Editor - Phylogenetics
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Volume 25, Number 2, January 2009 Discovery Notes - Sequence Analysis
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journals/bioinformatics/HorlerBPAT09 Original Papers - Genome Analysis
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journals/bioinformatics/XieRB09 Sequence Analysis
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journals/bioinformatics/ZhangSY09 Phylogenetics
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journals/bioinformatics/Wu09 Yufeng Wu :
A practical method for exact computation of subtree prune and regraft distance.
190-196
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journals/bioinformatics/ChenZZXSWLWL09 Systems Biology
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journals/bioinformatics/YipG09 Kevin Y. Yip ,
Mark Gerstein :
Training set expansion: an approach to improving the reconstruction of biological networks from limited and uneven reliable interactions.
243-250
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journals/bioinformatics/BarkauskasAKLCWLMLR09 Data and Text Mining
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journals/bioinformatics/MukherjeePNKZSGS09 Applications Note - Genome Analysis
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journals/bioinformatics/KitamuraAMKTNNSH09 Sequence Analysis
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Volume 25, Number 3, February 2009 Discovery Note - Sequence Analysis
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journals/bioinformatics/KaczkowskiTRHSG09 Original Papers
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journals/bioinformatics/MakB09 Phylogenetics
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journals/bioinformatics/BayjanovWSVSM09 Gene Expression
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journals/bioinformatics/LiuX09 Kun-hong Liu ,
Chun-Gui Xu :
A genetic programming-based approach to the classification of multiclass microarray datasets.
331-337
Genetics and Population Analysis
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journals/bioinformatics/NamkungKYCKP09 Systems Biology
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journals/bioinformatics/JoungF09 Je-Gun Joung ,
Zhangjun Fei :
Identification of microRNA regulatory modules in Arabidopsis via a probabilistic graphical model.
387-393
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journals/bioinformatics/BolchiniFPN09 Applications Note - Structural Bioinformatics
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Volume 25, Number 4, February 2009 Review - Data and Text Mining
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journals/bioinformatics/GuralnickH09 Editorial
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journals/bioinformatics/BatemanQ09 Discovery Note - Gene Expression
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journals/bioinformatics/XinLBTFLHKN09 Original Papers - Genome Analysis
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journals/bioinformatics/RoiderMOVH09 Sequence Analysis
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journals/bioinformatics/KotteH09 Data and Text Mining
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journals/bioinformatics/ZhangLRZXZHCW09 Applications Note - Genome Analysis
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journals/bioinformatics/BarkerDRAR09 Phylogenetics
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journals/bioinformatics/BulhellerH09 Gene Expression
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Volume 25, Number 5, March 2009 Discovery Note - Sequence Analysis
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journals/bioinformatics/AlonEJRVTCKG09 Original Papers - Genome Analysis
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journals/bioinformatics/AhmedSSNN09 export record as
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journals/bioinformatics/LingHX09 Xu Ling ,
Xin He ,
Dong Xin :
Detecting gene clusters under evolutionary constraint in a large number of genomes.
571-577
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journals/bioinformatics/TaherO09 Leila Taher ,
Ivan Ovcharenko :
Variable locus length in the human genome leads to ascertainment bias in functional inference for non-coding elements.
578-584
Sequence Analysis
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journals/bioinformatics/ChenJ09 Phylogenetics
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journals/bioinformatics/ChengHGIV09 export record as
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journals/bioinformatics/Sato09 Naoki Sato :
Gclust: trans -kingdom classification of proteins using automatic individual threshold setting.
599-605
Structural Bioinformatics
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journals/bioinformatics/YangEBK09 export record as
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journals/bioinformatics/WallachL09 Izhar Wallach ,
Ryan H. Lilien :
The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding.
615-620
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journals/bioinformatics/BrenkeKCBHLMV09 Structural Bioinformatics and Data Mining
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journals/bioinformatics/NishimaQHK09 Gene Expression
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journals/bioinformatics/Rajaram09 Satwik Rajaram :
A novel meta-analysis method exploiting consistency of high-throughput experiments.
636-642
Data and Text Mining
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journals/bioinformatics/AlexandrovDMDTMT09 export record as
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journals/bioinformatics/ZhangWMLMC09 Databases and Ontologies
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journals/bioinformatics/ChelalaKL09 Applications Note - Genome Analysis
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journals/bioinformatics/MartinVTXS09 export record as
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journals/bioinformatics/LangilleB09 Sequence Analysis
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journals/bioinformatics/StenbergZJ09 J. Stenberg ,
M. Zhang ,
H. Ji :
Disperse - a software system for design of selector probes for exon resequencing applications.
666-667
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journals/bioinformatics/GouzyCS09 Phylogenetics
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journals/bioinformatics/WhalleyBB09 Structural Bioinformatics
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journals/bioinformatics/MannSREWB09 Gene Expression
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journals/bioinformatics/RieberKEK09 Genetics and Population Analysis
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journals/bioinformatics/SargolzaeiS09 Systems Biology
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journals/bioinformatics/MirschelSRGG09 Databases and Ontologies
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journals/bioinformatics/PengLM09 Letter to the Editor - Gene Expression
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journals/bioinformatics/PoundsC09
Volume 25, Number 6, March 2009 Editorial
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journals/bioinformatics/RockeITQD09 Original Papers - Genome Analysis
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journals/bioinformatics/BudinskaGS09 export record as
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journals/bioinformatics/WuCHSL09 export record as
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journals/bioinformatics/LaFramboiseWT09 Sequence Analysis
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journals/bioinformatics/JungK09 Phylogenetics
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journals/bioinformatics/PommierCLHT09 Structural Bioinformatics
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journals/bioinformatics/LiL09 Jinyan Li ,
Qian Liu :
'Double water exclusion': a hypothesis refining the O-ring theory for the hot spots at protein interfaces.
743-750
Gene Expression
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journals/bioinformatics/XieWS09 export record as
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journals/bioinformatics/PodwojskiFCPSSMSMUIR09 Katharina Podwojski ,
Arno Fritsch ,
Daniel C. Chamrad ,
Wolfgang Paul ,
Barbara Sitek ,
Kai Stühler ,
Petra Mutzel ,
Christian Stephan ,
Helmut E. Meyer ,
Wolfgang Urfer ,
Katja Ickstadt ,
Jörg Rahnenführer :
Retention time alignment algorithms for LC/MS data must consider non-linear shifts.
758-764
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journals/bioinformatics/McCarthyS09 Systems Biology
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journals/bioinformatics/HaynesB09 Data and Text Mining
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journals/bioinformatics/WermterTH09 Applications Note - Sequence Analysis
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journals/bioinformatics/LagnelTI09 Gene Expression
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journals/bioinformatics/PorzeliusBS09 Systems Biology
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journals/bioinformatics/WuW09 X. Wu ,
M. Watson :
CORNA: testing gene lists for regulation by microRNAs.
832-833
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journals/bioinformatics/VanlierWQVHDYB09 Data and Text Mining
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journals/bioinformatics/HurSSF09
Volume 25, Number 7, April 2009 Discovery Note - Genome Analysis
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journals/bioinformatics/ZhangH09 Original Papers
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journals/bioinformatics/YenHL09 Kuo-Ho Yen ,
Chung-Liang Ho ,
Chiang Lee :
The analysis of inconsistencies between cytogenetic annotations and sequence mapping by defining the imprecision zones of cytogenetic banding.
845-852
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journals/bioinformatics/YanoverSZ09 Gene Expression
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journals/bioinformatics/HellerMS09 Systems Biology
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journals/bioinformatics/MondoER09 Data and Text Mining
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journals/bioinformatics/NetzerMOPPVVB09 Structural Bioinformatics
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journals/bioinformatics/AraiWKY09 Applications Note - Genome Analysis
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journals/bioinformatics/BenoukrafCFJKJTIASF09 Touati Benoukraf ,
Pierre Cauchy ,
Romain Fenouil ,
Adrien Jeanniard ,
Frederic Koch ,
Sébastien Jaeger ,
Denis Thieffry ,
Jean Imbert ,
Jean-Christophe Andrau ,
Salvatore Spicuglia ,
Pierre Ferrier :
CoCAS: a ChIP-on-chip analysis suite.
954-955
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journals/bioinformatics/StewartOR09 export record as
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journals/bioinformatics/KallSN09 Sequence Analysis
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journals/bioinformatics/EavesG09 Phylogenetics
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journals/bioinformatics/KubatkoCK09 Data and Text Mining
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journals/bioinformatics/StatesAWBA09 export record as
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journals/bioinformatics/PavlopoulosPKHS09 Databases and Ontologies
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journals/bioinformatics/TongLMCT09
Volume 25, Number 8, April 2009 Original Papers - Genome Analysis
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journals/bioinformatics/LynnLLWSLLHP09 export record as
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journals/bioinformatics/BatuwitaP09 Structural Bioinformatics
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journals/bioinformatics/LoCRLSH09 Gene Expression
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journals/bioinformatics/HundertmarkFRMKJ09 export record as
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journals/bioinformatics/JiangW09 Genetics and Population Analysis
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journals/bioinformatics/ProsperiDILZU09 export record as
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journals/bioinformatics/LeeS09 export record as
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journals/bioinformatics/BourgonMBSH09 Systems Biology
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journals/bioinformatics/BorossOF09 Data and Text Mining
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journals/bioinformatics/ChangDTP09 Applications Note - Gene Expression
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journals/bioinformatics/GertheissT09 Jan Gertheiss ,
Gerhard Tutz :
Supervised feature selection in mass spectrometry-based proteomic profiling by blockwise boosting.
1076-1077
Genome Analysis
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journals/bioinformatics/NilssonJACE09 export record as
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journals/bioinformatics/WangHWMC09 Sequence Analysis
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journals/bioinformatics/AgrawalH09 Ankit Agrawal ,
Xiaoqiu Huang :
PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance.
1082-1083
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journals/bioinformatics/HomannFGR09 Structural Bioinformatics
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journals/bioinformatics/KelmSD09 Gene Expression
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journals/bioinformatics/ScharlL09 Systems Biology
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journals/bioinformatics/BindeaMHCTKFPTG09 Data and Text Mining
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journals/bioinformatics/LiDXL09 Databases and Ontologies
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journals/bioinformatics/MouraSPLHC09
Volume 25, Number 9, May 2009 Original Papers - Genome Analysis
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journals/bioinformatics/WielBEKMMSSTY09 Sequence Analysis
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journals/bioinformatics/TrapnellPS09 export record as
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journals/bioinformatics/Zhang09 Zhu-Jin Zhang :
DV-Curve: a novel intuitive tool for visualizing and analyzing DNA sequences.
1112-1117
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journals/bioinformatics/BusljeSDN09 Structural Bioinformatics
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journals/bioinformatics/KimYSKMCDY09 Gene Expression
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journals/bioinformatics/SharmaPZM09 Systems Biology
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journals/bioinformatics/UlitskyS09 Igor Ulitsky ,
Ron Shamir :
Identifying functional modules using expression profiles and confidence-scored protein interactions.
1158-1164
Data and Text Mining
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journals/bioinformatics/KingT09 export record as
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journals/bioinformatics/RogersB09 export record as
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journals/bioinformatics/RuthsRN09 Applications Note - Genome Analysis
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journals/bioinformatics/KuznetsovMM09 export record as
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journals/bioinformatics/PlyusninHK09 Sequence Analysis
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journals/bioinformatics/GiffordLRKHPS09 Phylogenetics
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journals/bioinformatics/LottSHM09 Structural Bioinformatics
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journals/bioinformatics/PyrkovCKNE09 Gene Expression
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journals/bioinformatics/Leek09 Jeffrey T. Leek :
The tspair package for finding top scoring pair classifiers in R .
1203-1204
Systems Biology
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journals/bioinformatics/HacheWLH09 export record as
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journals/bioinformatics/McCombCNWMR09 Databases and Ontologies
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journals/bioinformatics/PivaGNP09 Corrigendum
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journals/bioinformatics/ForslundS09
Volume 25, Number 10, May 2009 Discovery Note - Genome Analysis
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journals/bioinformatics/WangYYDL09 Sequence Analysis
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journals/bioinformatics/BurgessMSC09 Original Papers - Genome Analysis
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journals/bioinformatics/Pique-RegiOA09 export record as
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journals/bioinformatics/Anders09 Simon Anders :
Visualization of genomic data with the Hilbert curve.
1231-1235
Sequence Analysis
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journals/bioinformatics/KolbeE09 export record as
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journals/bioinformatics/ChuBHP09 Structural Bioinformatics
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journals/bioinformatics/ZhengLSWDZJ09 export record as
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journals/bioinformatics/SadreyevSBG09 export record as
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journals/bioinformatics/BjorkholmDKFAH09 export record as
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journals/bioinformatics/HandlKL09 Gene Expression
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journals/bioinformatics/SanguinettiROA09 Genetics and Population Analysis
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journals/bioinformatics/Thomas09 Alun Thomas :
A method and program for estimating graphical models for linkage disequilibrium that scale linearly with the number of loci, and their application to gene drop simulation.
1287-1292
Systems Biology
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journals/bioinformatics/ZhangLN09a Hao Zhang ,
Ole Lund ,
Morten Nielsen :
The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding.
1293-1299
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journals/bioinformatics/KirkS09 Data and Text Mining
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journals/bioinformatics/BarutcuogluADST09 export record as
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journals/bioinformatics/TsoiBKZ09 Databases and Ontologies
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journals/bioinformatics/BlankenburgFPJRESBLA09 Hagen Blankenburg ,
Robert D. Finn ,
Andreas Prlic ,
Andrew M. Jenkinson ,
Fidel Ramírez ,
Dorothea Emig ,
Sven-Eric Schelhorn ,
Joachim Büch ,
Thomas Lengauer ,
Mario Albrecht :
DASMI: exchanging, annotating and assessing molecular interaction data.
1321-1328
Applications Note - Sequence Analysis
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journals/bioinformatics/NawrockiKE09 export record as
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journals/bioinformatics/HuangGL09 Data and Text Mining
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journals/bioinformatics/XuF09
Volume 25, Number 11, June 2009 Discovery Note - Sequence Analysis
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journals/bioinformatics/LindlofBCOO09 Original Papers - Genome Analysis
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journals/bioinformatics/KoressaarJR09 Triinu Koressaar ,
Kai Jõers ,
Maido Remm :
Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organisms.
1349-1355
Sequence Analysis
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journals/bioinformatics/PetersonKTP09 export record as
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journals/bioinformatics/Schatz09 Michael C. Schatz :
CloudBurst: highly sensitive read mapping with MapReduce.
1363-1369
Phylogenetics
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journals/bioinformatics/SuchardR09 Genetics and Population Analysis
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journals/bioinformatics/Hernandez-SanchezGK09 Systems Biology
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journals/bioinformatics/NeeleyKCB09 export record as
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journals/bioinformatics/Pan09 Wei Pan :
Network-based multiple locus linkage analysis of expression traits.
1390-1396
Data and Text Mining
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journals/bioinformatics/RamakrishnanVPWLPMMM09 export record as
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journals/bioinformatics/SpasicSMPK09 export record as
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journals/bioinformatics/TrieschniggPLJKR09 Applications Note - Genome Analysis
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journals/bioinformatics/ChenCC09 Sequence Analysis
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journals/bioinformatics/CockACCCDFHKWH09 Peter J. A. Cock ,
Tiago Antao ,
Jeffrey T. Chang ,
Brad A. Chapman ,
Cymon J. Cox ,
Andrew Dalke ,
Iddo Friedberg ,
Thomas Hamelryck ,
Frank Kauff ,
Bartek Wilczynski ,
Michiel J. L. de Hoon :
Biopython: freely available Python tools for computational molecular biology and bioinformatics.
1422-1423
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journals/bioinformatics/KimTRMCSTP09 Structural Bioinformatics
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journals/bioinformatics/ByunH09 Yanga Byun ,
Kyungsook Han :
PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots.
1435-1437
Gene Expression
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journals/bioinformatics/GeeleherMHG09 Genetics and Population Analysis
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journals/bioinformatics/GiovanniniZBCB09 export record as
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journals/bioinformatics/WatkinsonA09 John Watkinson ,
Dimitris Anastassiou :
Synergy Disequilibrium Plots: graphical visualization of pairwise synergies and redundancies of SNPs with respect to a phenotype.
1445-1446
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journals/bioinformatics/LibradoR09 Systems Biology
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journals/bioinformatics/Bois09 Frédéric Y. Bois :
GNU MCSim: Bayesian statistical inference for SBML-coded systems biology models.
1453-1454
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journals/bioinformatics/CastroFDSMMA09 Data and Text Mining
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journals/bioinformatics/BreukelenTDH09 Erratum
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journals/bioinformatics/HachiyaOPS09a
Volume 25, Number 12, June 2009 ISMB/ECCB 2009 Conference Proceedings, June 27 TO July 2, 2009, Stockholm, Sweden - Editorial
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journals/bioinformatics/GusfieldT09 Original Papers
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journals/bioinformatics/Vider-ShalitSMTLL09 Comparative genomics
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journals/bioinformatics/GarberGCZFX09 Databases and Ontologies
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journals/bioinformatics/VerspoorDCH09 Evolution and Phylogeny
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journals/bioinformatics/OConnorM09 Timothy D. O'Connor ,
Nicholas I. Mundy :
Genotype-phenotype associations: substitution models to detect evolutionary associations between phenotypic variables and genotypic evolutionary rate.
Gene Regulation and transcriptomics
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journals/bioinformatics/UcarBPW09 Other Bioinformatics Applications and Methods
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journals/bioinformatics/YamanishiHKGK09 Population genomics
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journals/bioinformatics/BhaskarS09 Anand Bhaskar ,
Yun S. Song :
Multi-locus match probability in a finite population: a fundamental difference between the Moran and Wright-Fisher models.
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journals/bioinformatics/YinJS09 Protein Interactions and Molecular Networks
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journals/bioinformatics/ZaslavskiyBV09 Protein Structure and Function
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journals/bioinformatics/AlipanahiGKDL09 
