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David J. States
Person information
- affiliation: University of Michigan, Ann Arbor, USA
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2010 – 2019
- 2014
- [j25]Sirarat Sarntivijai
, Yu Lin, Zuoshuang Xiang, Terrence F. Meehan
, Alexander D. Diehl
, Uma D. Vempati, Stephan C. Schürer, Chao Pang
, James Malone, Helen E. Parkinson
, Yue Liu, Terue Takatsuki, Kaoru Saijo, Hiroshi Masuya, Yukio Nakamura, Matthew H. Brush, Melissa A. Haendel
, Jie Zheng, Christian J. Stoeckert Jr., Bjoern Peters, Christopher J. Mungall, Thomas E. Carey
, David J. States, Brian D. Athey
, Yongqun He
:
CLO: The cell line ontology. J. Biomed. Semant. 5: 37 (2014) - 2012
- [j24]Maureen A. Sartor, Alexander S. Ade, Zach Wright, David J. States, Gilbert S. Omenn
, Brian D. Athey
, Alla Karnovsky:
Metab2MeSH: annotating compounds with medical subject headings. Bioinform. 28(10): 1408-1410 (2012) - 2010
- [j23]Gang Su, Allan Kuchinsky, John H. Morris
, David J. States, Fan Meng:
GLay: community structure analysis of biological networks. Bioinform. 26(24): 3135-3137 (2010) - [j22]Arvind Rao, David J. States, Alfred O. Hero III, James Douglas Engel:
Understanding Distal transcriptional Regulation from Sequence, Expression and interactome Perspectives. J. Bioinform. Comput. Biol. 8(2): 219-246 (2010)
2000 – 2009
- 2009
- [j21]Jing Gao, Alexander S. Ade, V. Glenn Tarcea, Terry E. Weymouth, Barbara R. Mirel, H. V. Jagadish, David J. States:
Integrating and annotating the interactome using the MiMI plugin for cytoscape. Bioinform. 25(1): 137-138 (2009) - [j20]Junguk Hur
, Adam D. Schuyler
, David J. States, Eva L. Feldman
:
SciMiner: web-based literature mining tool for target identification and functional enrichment analysis. Bioinform. 25(6): 838-840 (2009) - [j19]David J. States, Alexander S. Ade, Zachary C. Wright, Aaron V. Bookvich, Brian D. Athey
:
MiSearch adaptive pubMed search tool. Bioinform. 25(7): 974-976 (2009) - [j18]V. Glenn Tarcea, Terry E. Weymouth, Alexander S. Ade, Aaron V. Bookvich, Jing Gao, Vasudeva Mahavisno, Zach Wright, Adriane Chapman, Magesh Jayapandian, Arzucan Özgür
, Yuanyuan Tian, James D. Cavalcoli, Barbara Mirel, Jignesh M. Patel, Dragomir R. Radev, Brian D. Athey
, David J. States, H. V. Jagadish:
Michigan molecular interactions r2: from interacting proteins to pathways. Nucleic Acids Res. 37(Database-Issue): 642-646 (2009) - 2008
- [j17]Maital Ashkenazi, Gary D. Bader
, Allan Kuchinsky, Menachem Moshelion, David J. States:
Cytoscape ESP: simple search of complex biological networks. Bioinform. 24(12): 1465-1466 (2008) - [j16]Sirarat Sarntivijai
, Alexander S. Ade, Brian D. Athey
, David J. States:
A bioinformatics analysis of the cell line nomenclature. Bioinform. 24(23): 2760-2766 (2008) - [j15]Aaron Elkiss, Siwei Shen, Anthony Fader, Günes Erkan, David J. States, Dragomir R. Radev:
Blind men and elephants: What do citation summaries tell us about a research article? J. Assoc. Inf. Sci. Technol. 59(1): 51-62 (2008) - [j14]Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel:
Using Directed Information to Build Biologically Relevant Influence Networks. J. Bioinform. Comput. Biol. 6(3): 493-519 (2008) - 2007
- [j13]Yuanyuan Tian, Richard C. McEachin, Carlos Santos, David J. States, Jignesh M. Patel:
SAGA: a subgraph matching tool for biological graphs. Bioinform. 23(2): 232-239 (2007) - [j12]Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel:
Inferring Time-Varying Network Topologies from Gene Expression Data. EURASIP J. Bioinform. Syst. Biol. 2007 (2007) - [j11]Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel:
Motif Discovery in Tissue-Specific Regulatory Sequences Using Directed Information. EURASIP J. Bioinform. Syst. Biol. 2007 (2007) - [j10]Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni
, Bin Liu, Arnab Nandi
, Carlos Santos, Philip C. Andrews
, Brian D. Athey
, David J. States, H. V. Jagadish:
Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together. Nucleic Acids Res. 35(Database-Issue): 566-571 (2007) - [j9]Yili Chen, Thomas W. Blackwell, Ji Chen, Jing Gao, Angel W. Lee, David J. States:
Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function. PLoS Comput. Biol. 3(4) (2007) - 2006
- [c16]Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel:
Probabilistic data integration and visualization for understanding transcriptional regulation. EUSIPCO 2006: 1-5 - [c15]Arvind Rao, Alfred O. Hero III, David J. States, James Douglas Engel:
Inference of Biologically Relevant Gene Influence Networks Using the Directed Information Criterion. ICASSP (2) 2006: 1028-1031 - 2005
- [j8]Carlos Santos, Daniela Eggle, David J. States:
Wnt pathway curation using automated natural language processing: combining statistical methods with partial and full parse for knowledge extraction. Bioinform. 21(8): 1653-1658 (2005) - [c14]H. V. Jagadish, David J. States, Burkhard Rost
:
ISMB 2005. ISMB (Supplement of Bioinformatics) 2005: 1-2 - [c13]H. V. Jagadish, David J. States, Burkhard Rost:
ISMB 2005 Organization. ISMB (Supplement of Bioinformatics) 2005: 3-6 - 2001
- [j7]David J. States:
Time to defend what we have won. Bioinform. 17(4): 299 (2001) - [j6]Rongxiang Liu, Thomas W. Blackwell, David J. States:
Conformational model for binding site recognition by the E.coli MetJ transcription factor. Bioinform. 17(7): 622-633 (2001) - [c12]David J. States, Volker Nowotny, Thomas W. Blackwell:
Probabilistic approaches to the use of higher order clone relationships in physical map assembly. ISMB (Supplement of Bioinformatics) 2001: 262-269 - 2000
- [c11]Zhengyan Kan, Warren Gish, Eric C. Rouchka, Jarret Glasscock, David J. States:
UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences. ISMB 2000: 218-227
1990 – 1999
- 1999
- [c10]Thomas W. Blackwell, Eric C. Rouchka, David J. States:
Identity by Descent Genome Segmentation Based on Single Nucleotide Polymorphism Distributions. ISMB 1999: 54-59 - 1998
- [j5]Pankaj Agarwal, David J. States:
Comparative accuracy of methods for protein sequence similarity search. Bioinform. 14(1): 40-47 (1998) - [c9]Eric C. Rouchka, David J. States:
Sequence Assembly Validation by Multiple Restriction Digest Fragment Coverage Analysis. ISMB 1998: 140-147 - [c8]Rongxiang Liu, Thomas W. Blackwell, David J. States:
A structure based similarity measure for nucleic acid sequence comparison. RECOMB 1998: 173-181 - [c7]David G. Politte, David R. Maffitt, David J. States:
Estimation of allele frequencies from color-multiplexed electropherograms. RECOMB 1998: 202-206 - 1996
- [j4]Pankaj Agarwal, David J. States:
A Bayesian Evolutionary Distance for Parametrically Aligned Sequences. J. Comput. Biol. 3(1): 1-17 (1996) - [c6]David J. States, Pankaj Agarwal:
Compact Encoding Strategies for DNA Sequence Similarity Search. ISMB 1996: 211-217 - [e1]David J. States, Pankaj Agarwal, Terry Gaasterland, Lawrence Hunter, Randall Smith:
Proceedings of the Fourth International Conference on Intelligent Systems for Molecular Biology, St. Louis, MO, USA, June 12-15 1996. AAAI 1996, ISBN 1-57735-002-2 [contents] - 1994
- [j3]David J. States, Warren Gish:
QGB: Combined Use of Sequence Similarity and Codon Bias for Coding Region Identification. J. Comput. Biol. 1(1): 39-50 (1994) - [c5]Toni Kazic, David J. States, Lloyd Allison:
Motifs in Biology: Analysis of Ambiguous Data: Introduction. HICSS (5) 1994: 224 - [c4]Pankaj Agarwal, David J. States:
The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome. ISMB 1994: 1-9 - 1993
- [j2]Jean-Michel Claverie, David J. States:
Information Enhancement Methods for Large Scale Sequence Analysis. Comput. Chem. 17(2): 191-201 (1993) - [c3]David J. States, Nomi L. Harris, Lawrence Hunter:
Computationally Efficient Cluster Representation in Molecular Sequence Megaclassification. ISMB 1993: 387-394 - 1992
- [j1]Lawrence Hunter, David J. States:
Bayesian Classification of Protein Structure. IEEE Expert 7(4): 67-75 (1992) - [c2]Nomi L. Harris, Lawrence Hunter, David J. States:
Mega-Classification: Discovering Motifs in Massive Datastreams. AAAI 1992: 837-842 - [c1]Lawrence Hunter
, Nomi L. Harris, David J. States:
Efficient Classification of Massive, Unsegmented Datastreams. ML 1992: 224-232
Coauthor Index
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