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Martijn A. Huynen
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2020 – today
- 2023
- [j22]Joeri van Strien
, Felix Evers, Madhurya Lutikurti, Stijn L. Berendsen
, Alejandro Garanto, Geert-Jan van Gemert, Alfredo Cabrera-Orefice, Richard J. Rodenburg, Ulrich Brandt
, Taco W. A. Kooij
, Martijn A. Huynen
:
Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolution. PLoS Comput. Biol. 19(8) (2023) - 2021
- [j21]Lisette Meerstein-Kessel, Jeron Venhuizen
, Daniel Garza
, Nicolas Pröllochs
, Emma J. Vos
, Joshua M. Obiero
, Philip L. Felgner, Robert W. Sauerwein, Marynthe Peters
, Annie S. P. Yang
, Martijn A. Huynen:
Novel insights from the Plasmodium falciparum sporozoite-specific proteome by probabilistic integration of 26 studies. PLoS Comput. Biol. 17(4) (2021)
2010 – 2019
- 2019
- [j20]Joeri van Strien
, Sergio Guerrero-Castillo, Iliana A Chatzispyrou, Riekelt H. Houtkooper
, Ulrich Brandt
, Martijn A. Huynen
:
COmplexome Profiling ALignment (COPAL) reveals remodeling of mitochondrial protein complexes in Barth syndrome. Bioinform. 35(17): 3083-3091 (2019) - 2016
- [j19]Radek Szklarczyk, Wout Megchelenbrink, Pavel Cizek, Marie Ledent, Gonny Velemans, Damian Szklarczyk, Martijn A. Huynen
:
WeGET: predicting new genes for molecular systems by weighted co-expression. Nucleic Acids Res. 44(Database-Issue): 567-573 (2016) - 2015
- [j18]Qingzhen Hou
, Bas E. Dutilh
, Martijn A. Huynen
, Jaap Heringa, K. Anton Feenstra
:
Sequence specificity between interacting and non-interacting homologs identifies interface residues - a homodimer and monomer use case. BMC Bioinform. 16: 325:1-325:12 (2015) - [j17]Robin van der Lee
, Qian Feng, Martijn A. Langereis, Rob ter Horst
, Radek Szklarczyk, Mihai G. Netea, Arno C. Andeweg, Frank J. M. van Kuppeveld
, Martijn A. Huynen
:
Integrative Genomics-Based Discovery of Novel Regulators of the Innate Antiviral Response. PLoS Comput. Biol. 11(10) (2015) - 2013
- [j16]Sergio Rossell, Martijn A. Huynen
, Richard A. Notebaart:
Inferring Metabolic States in Uncharacterized Environments Using Gene-Expression Measurements. PLoS Comput. Biol. 9(3) (2013) - 2011
- [j15]Jaime Huerta-Cepas
, Joaquín Dopazo
, Martijn A. Huynen
, Toni Gabaldón
:
Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication. Briefings Bioinform. 12(5): 442-448 (2011) - [j14]Bas E. Dutilh
, Rasa Jurgelenaite, Radek Szklarczyk, Sacha A. F. T. van Hijum, Harry R. Harhangi, Markus Schmid, Bart de Wild, Kees-Jan Françoijs, Henk Stunnenberg, Marc Strous
, Mike S. M. Jetten, Huub J. M. Op den Camp, Martijn A. Huynen
:
FACIL: Fast and Accurate Genetic Code Inference and Logo. Bioinform. 27(14): 1929-1933 (2011) - [c6]Wout Megchelenbrink, Martijn A. Huynen, Elena Marchiori:
Flux Measurement Selection in Metabolic Networks. PRIB 2011: 214-224 - 2010
- [j13]Iziah Edwin Sama, Martijn A. Huynen
:
Measuring the physical cohesiveness of proteins using physical interaction enrichment. Bioinform. 26(21): 2737-2743 (2010)
2000 – 2009
- 2009
- [j12]Bas E. Dutilh
, Martijn A. Huynen
, Marc Strous
:
Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly. Bioinform. 25(21): 2878-2881 (2009) - 2008
- [j11]Martin Oti
, Jeroen van Reeuwijk, Martijn A. Huynen
, Han G. Brunner:
Conserved co-expression for candidate disease gene prioritization. BMC Bioinform. 9 (2008) - [j10]Bas E. Dutilh
, Ying He, Maarten L. Hekkelman
, Martijn A. Huynen
:
Signature, a web server for taxonomic characterization of sequence samples using signature genes. Nucleic Acids Res. 36(Web-Server-Issue): 470-474 (2008) - 2007
- [j9]Bas E. Dutilh
, Vera van Noort
, René T. J. M. van der Heijden, T. Boekhout, Berend Snel
, Martijn A. Huynen
:
Assessment of phylogenomic and orthology approaches for phylogenetic inference. Bioinform. 23(7): 815-824 (2007) - [j8]René T. J. M. van der Heijden, Berend Snel
, Vera van Noort
, Martijn A. Huynen
:
Orthology prediction at scalable resolution by phylogenetic tree analysis. BMC Bioinform. 8 (2007) - [j7]Fiona G. G. Nielsen, Stefan Gräf, Xinmin Zhang, Stefan Kurtz, Sergei Denissov, Roland Green, Ewan Birney, Paul Flicek, Martijn A. Huynen, Henk Stunnenberg:
Optimising oligonucleotide array design for ChIP-on-chip. BMC Bioinform. 8(S-8) (2007) - [j6]Toni Gabaldón
, Martijn A. Huynen
:
From Endosymbiont to Host-Controlled Organelle: The Hijacking of Mitochondrial Protein Synthesis and Metabolism. PLoS Comput. Biol. 3(11) (2007) - [c5]Stefan Gräf, Fiona G. G. Nielsen
, Stefan Kurtz, Martijn A. Huynen
, Ewan Birney
, Henk Stunnenberg, Paul Flicek
:
Optimized design and assessment of whole genome tiling arrays. ISMB/ECCB (Supplement of Bioinformatics) 2007: 195-204 - 2005
- [j5]Victor Kunin
, Sarah A. Teichmann
, Martijn A. Huynen
, Christos A. Ouzounis
:
The properties of protein family space depend on experimental design. Bioinform. 21(11): 2618-2622 (2005) - [j4]Christian von Mering
, Lars Juhl Jensen
, Berend Snel
, Sean D. Hooper, Markus Krupp, Mathilde Foglierini
, Nelly Jouffre, Martijn A. Huynen
, Peer Bork
:
STRING: known and predicted protein-protein associations, integrated and transferred across organisms. Nucleic Acids Res. 33(Database-Issue): 433-437 (2005) - [c4]Toni Gabaldón
, Martijn A. Huynen
:
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes. ECCB/JBI 2005: 150 - 2004
- [j3]Harm van Bakel
, Martijn A. Huynen
, Cisca Wijmenga
:
Prokaryotic diversity of the Saccharomyces cerevisiae Atx1p-mediated copper pathway. Bioinform. 20(16): 2644-2655 (2004) - 2003
- [j2]Christian von Mering
, Martijn A. Huynen
, Daniel Jaeggi, Steffen Schmidt
, Peer Bork
, Berend Snel
:
STRING: a database of predicted functional associations between proteins. Nucleic Acids Res. 31(1): 258-261 (2003)
1990 – 1999
- 1998
- [c3]Thomas Dandekar, Stefan Schuster, Martijn A. Huynen, Peer Bork:
Pathway alignment: Application in the comparative analysis of glycolysis. German Conference on Bioinformatics 1998 - 1996
- [j1]Martijn A. Huynen
, Alan S. Perelson, W. A. Vieira, Peter F. Stadler
:
Base Pairing Probabilities in a Complete HIV-1 RNA. J. Comput. Biol. 3(2): 253-274 (1996) - [c2]Ivo L. Hofacker, Martijn A. Huynen, Peter F. Stadler, Paul E. Stolorz:
Knowledge Discovery in RNA Sequence Families of HIV Using Scalable Computers. KDD 1996: 20-25
1980 – 1989
- 1989
- [c1]Martijn A. Huynen, Paulien Hogeweg:
Genetic Algorithms and Information Accumulation during the Evolution of Gene Regulation. ICGA 1989: 225-230
Coauthor Index
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