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2020 – today
- 2024
[i2]Sowmya S. Sundaram, Benjamin Solomon, Avani Khatri, Anisha Laumas, Purvesh Khatri, Mark A. Musen:
Use of a Structured Knowledge Base Enhances Metadata Curation by Large Language Models. CoRR abs/2404.05893 (2024)- [i1]Ljubomir J. Buturovic, Michael B. Mayhew, Roland Lüthy, Kirindi Choi, Uros Midic, Nandita Damaraju, Yehudit Hasin-Brumshtein, Amitesh Pratap, Rhys M. Adams, João F. Henriques, Ambika Srinath, Paul Fleming, Claudia Pereira, Oliver Liesenfeld, Purvesh Khatri, Timothy Sweeney:
Development of Machine Learning Classifiers for Blood-based Diagnosis and Prognosis of Suspected Acute Infections and Sepsis. CoRR abs/2407.02737 (2024) - 2022
- [j17]Laurynas Kalesinskas
, Sanjana Gupta, Purvesh Khatri:
Increasing reproducibility, robustness, and generalizability of biomarker selection from meta-analysis using Bayesian methodology. PLoS Comput. Biol. 18(6) (2022) - 2021
- [j16]Lawrence Bai, Madeleine K. D. Scott, Ethan Steinberg, Laurynas Kalesinskas, Aida Habtezion, Nigam H. Shah, Purvesh Khatri:
Computational drug repositioning of atorvastatin for ulcerative colitis. J. Am. Medical Informatics Assoc. 28(11): 2325-2335 (2021) - [j15]Adriana Tomic, Ivan Tomic, Levi Waldron, Ludwig Geistlinger, Max Kuhn, Rachel L. Spreng, Lindsay C. Dahora, Kelly E. Seaton, Georgia D. Tomaras, Jennifer Hill, Niharika A. Duggal, Ross D. Pollock, Norman R. Lazarus, Stephen D. R. Harridge, Janet M. Lord, Purvesh Khatri, Andrew J. Pollard, Mark M. Davis:
SIMON: Open-Source Knowledge Discovery Platform. Patterns 2(1): 100178 (2021) - [c12]Riya Gupta, Aditya M. Rao, Lara Murphy Jones, Purvesh Khatri:
Formulating a gene signature for diagnosis of autoimmune and infectious diseases. BCB 2021: 68:1 - [c11]Madeleine Scott, Maneesha Limaye, Steven Schaffert, Robert West, Michael G. Ozawa, Pauline Chu, Viswam S. Nair, Albert C. Koong, Purvesh Khatri:
A multi-scale integrated analysis identifies KRT8 as a pan-cancer early biomarker. PSB 2021
2010 – 2019
- 2017
- [j14]William Yuan, Dadi Jiang, Dhanya K. Nambiar, Lydia P. Liew, Michael P. Hay, Joshua Bloomstein, Peter Lu, Brandon Turner, Quynh-Thu Le, Robert Tibshirani, Purvesh Khatri, Mark G. Moloney, Albert C. Koong:
Chemical Space Mimicry for Drug Discovery. J. Chem. Inf. Model. 57(4): 875-882 (2017) - [c10]Winston A. Haynes, Aurelie Tomczak, Purvesh Khatri:
Gene annotation bias impedes biomedical research. AMIA 2017 - [c9]Winston A. Haynes, Francesco Vallania, Purvesh Khatri:
Complementing single-cell RNA-seq using bulk transcriptional profiles. BIBM 2017: 1446-1450 - [c8]Winston A. Haynes, Francesco Vallania, Charles Liu, Erika Bongen, Aurelie Tomczak, Marta Andres-Terrè, Shane Lofgren, Andrew Tam, Cole A. Deisseroth, Matthew D. Li, Timothy E. Sweeney, Purvesh Khatri:
Empowering Multi-Cohort Gene Expression Analysis to Increase Reproducibility. PSB 2017: 144-153 - [c7]Madeleine Scott, Francesco Vallania, Purvesh Khatri:
Meta-Analysis of Continuous Phenotypes Identifies a Gene Signature that Correlates with COPD Disease Status. PSB 2017: 266-275 - 2015
- [j13]Mark A. Musen, Carol A. Bean, Kei-Hoi Cheung, Michel Dumontier, Kim A. Durante, Olivier Gevaert, Alejandra N. González-Beltrán, Purvesh Khatri, Steven H. Kleinstein, Martin J. O'Connor, Yannick Pouliot, Philippe Rocca-Serra, Susanna-Assunta Sansone, Jeffrey A. Wiser:
The center for expanded data annotation and retrieval. J. Am. Medical Informatics Assoc. 22(6): 1148-1152 (2015) - 2014
- [c6]Alexander A. Morgan, Matthew D. Li, Achal S. Achrol, Purvesh Khatri, Samuel H. Cheshier:
Multiplex Meta-Analysis of Medulloblastoma Expression Studies with External Controls. Pacific Symposium on Biocomputing 2014: 99-109 - 2012
- [j12]Purvesh Khatri, Marina Sirota, Atul J. Butte:
Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges. PLoS Comput. Biol. 8(2) (2012) - 2010
- [j11]Alexander A. Morgan, Purvesh Khatri, Richard Hayden Jones, Minnie M. Sarwal, Atul J. Butte:
Comparison of multiplex meta analysis techniques for understanding the acute rejection of solid organ transplants. BMC Bioinform. 11(S-9): S6 (2010) - [j10]Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici:
Predicting Novel Human Gene Ontology Annotations Using Semantic Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 7(1): 91-99 (2010)
2000 – 2009
- 2009
- [j9]Adi L. Tarca, Sorin Draghici, Purvesh Khatri, Sonia S. Hassan, Pooja Mittal, Jung-Sun Kim, Chong Jai Kim, Juan Pedro Kusanovic, Roberto Romero:
A novel signaling pathway impact analysis. Bioinform. 25(1): 75-82 (2009) - 2008
- [c5]Calin Voichita, Purvesh Khatri, Sorin Draghici:
Identifying uncertainty regions in Support Vector Machines using geometric margin and convex hulls. IJCNN 2008: 3319-3324 - 2007
- [j8]Purvesh Khatri, Calin Voichita, Khalid Kattan, Nadeem Ansari, Avani Khatri, Constantin Georgescu, Adi L. Tarca, Sorin Draghici:
Onto-Tools: new additions and improvements in 2006. Nucleic Acids Res. 35(Web-Server-Issue): 206-211 (2007) - [c4]Purvesh Khatri, Sorin Draghici, Adi L. Tarca, Sonia S. Hassan, Roberto Romero:
A System Biology Approach for the Steady-State Analysis of Gene Signaling Networks. CIARP 2007: 32-41 - [c3]Bogdan Done, Purvesh Khatri, Arina Done, Sorin Draghici:
Semantic Analysis of Genome Annotations using Weighting Schemes. CIBCB 2007: 212-218 - 2006
- [j7]Sorin Draghici, Sivakumar Sellamuthu, Purvesh Khatri:
Babel's tower revisited: a universal resource for cross-referencing across annotation databases. Bioinform. 22(23): 2934-2939 (2006) - [j6]Purvesh Khatri, Valmik Desai, Adi L. Tarca, Sivakumar Sellamuthu, Derek E. Wildman, Roberto Romero, Sorin Draghici:
New Onto-Tools: Promoter-Express, nsSNPCounter and Onto-Translate. Nucleic Acids Res. 34(Web-Server-Issue): 626-631 (2006) - 2005
- [j5]Purvesh Khatri, Bogdan Done, Archana Rao, Arina Done, Sorin Draghici:
A semantic analysis of the annotations of the human genome. Bioinform. 21(16): 3416-3421 (2005) - [j4]Purvesh Khatri, Sorin Draghici:
Ontological analysis of gene expression data: current tools, limitations, and open problems. Bioinform. 21(18): 3587-3595 (2005) - [j3]Purvesh Khatri, Sivakumar Sellamuthu, Pooja Malhotra, Kashyap Amin, Arina Done, Sorin Draghici:
Recent additions and improvements to the Onto-Tools. Nucleic Acids Res. 33(Web-Server-Issue): 762-765 (2005) - [c2]Valmik Desai, Purvesh Khatri, Arina Done, Aviva Friedman, Michael A. Tainsky, Sorin Draghici:
A Novel Bioinformatics Technique for Predicting Condition-specific Transcription Factor Binding Sites. CIBCB 2005: 202-207 - [c1]Sorin Draghici, Purvesh Khatri, Yanhong Liu, Kitty J. Chase, Elizabeth A. Bode, David A. Kulesh, Leonard P. Wasieloski, David A. Norwood, Jaques Reifman:
Identification of Genomic Signatures for the Design of Assays for the Detection and Monitoring of Anthrax Threats. Pacific Symposium on Biocomputing 2005 - 2004
- [j2]Purvesh Khatri, Pratik Bhavsar, Gagandeep Bawa, Sorin Draghici:
Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments. Nucleic Acids Res. 32(Web-Server-Issue): 449-456 (2004) - 2003
- [j1]Sorin Draghici, Purvesh Khatri, Pratik Bhavsar, Abhik Shah, Stephen A. Krawetz, Michael A. Tainsky:
Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate. Nucleic Acids Res. 31(13): 3775-3781 (2003)
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