


default search action
Timothy L. Bailey
Person information
- affiliation: University of Nevada, Reno, USA
Refine list

refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2021
- [j45]Timothy L. Bailey
:
STREME: accurate and versatile sequence motif discovery. Bioinform. 37(18): 2834-2840 (2021) - 2020
- [j44]Timothy O'Connor, Charles E. Grant, Mikael Bodén
, Timothy L. Bailey
:
T-Gene: improved target gene prediction. Bioinform. 36(12): 3902-3904 (2020)
2010 – 2019
- 2019
- [j43]Alice Cheng, Charles E. Grant, William S. Noble
, Timothy L. Bailey
:
MoMo: discovery of statistically significant post-translational modification motifs. Bioinform. 35(16): 2774-2782 (2019) - 2016
- [j42]Charles E. Grant, James Johnson, Timothy L. Bailey, William Stafford Noble:
MCAST: scanning for cis-regulatory motif clusters. Bioinform. 32(8): 1217-1219 (2016) - 2015
- [j41]Timothy L. Bailey, James Johnson
, Charles E. Grant, William S. Noble:
The MEME Suite. Nucleic Acids Res. 43(Webserver-Issue): W39-W49 (2015) - 2014
- [j40]Emi Tanaka
, Timothy L. Bailey, Uri Keich
:
Improving MEME via a two-tiered significance analysis. Bioinform. 30(14): 1965-1973 (2014) - [j39]Aidan O'Brien
, Timothy L. Bailey:
GT-Scan: identifying unique genomic targets. Bioinform. 30(18): 2673-2675 (2014) - 2013
- [j38]Ahmed M. Mehdi, Muhammad Shoaib B. Sehgal, Bostjan Kobe
, Timothy L. Bailey, Mikael Bodén
:
DLocalMotif: a discriminative approach for discovering local motifs in protein sequences. Bioinform. 29(1): 39-46 (2013) - [j37]Fabian A. Buske, Denis C. Bauer
, John S. Mattick
, Timothy L. Bailey:
Triplex-Inspector: an analysis tool for triplex-mediated targeting of genomic loci. Bioinform. 29(15): 1895-1897 (2013) - 2012
- [j36]Gabriel Cuéllar-Partida
, Fabian A. Buske, Robert C. McLeay, Tom Whitington, William Stafford Noble, Timothy L. Bailey:
Epigenetic priors for identifying active transcription factor binding sites. Bioinform. 28(1): 56-62 (2012) - [j35]Robert C. McLeay, Tom Lesluyes, Gabriel Cuéllar-Partida
, Timothy L. Bailey:
Genome-wide in silico prediction of gene expression. Bioinform. 28(21): 2789-2796 (2012) - [j34]Lei Sun, Zhihua Zhang, Timothy L. Bailey, Andrew C. Perkins
, Michael R. Tallack
, Zhao Xu, Hui Liu:
Prediction of novel long non-coding RNAs based on RNA-Seq data of mouse Klf1 knockout study. BMC Bioinform. 13: 331 (2012) - 2011
- [j33]Charles E. Grant, Timothy L. Bailey, William Stafford Noble:
FIMO: scanning for occurrences of a given motif. Bioinform. 27(7): 1017-1018 (2011) - [j32]Ahmed M. Mehdi, Muhammad Shoaib B. Sehgal, Bostjan Kobe
, Timothy L. Bailey, Mikael Bodén
:
A probabilistic model of nuclear import of proteins. Bioinform. 27(9): 1239-1246 (2011) - [j31]Emi Tanaka
, Timothy L. Bailey, Charles E. Grant, William Stafford Noble, Uri Keich
:
Improved similarity scores for comparing motifs. Bioinform. 27(12): 1603-1609 (2011) - [j30]Timothy L. Bailey:
DREME: motif discovery in transcription factor ChIP-seq data. Bioinform. 27(12): 1653-1659 (2011) - [j29]Philip Machanick
, Timothy L. Bailey:
MEME-ChIP: motif analysis of large DNA datasets. Bioinform. 27(12): 1696-1697 (2011) - [j28]Denis C. Bauer
, Kai Willadsen, Fabian A. Buske, Kim-Anh Lê Cao
, Timothy L. Bailey, Graham Dellaire
, Mikael Bodén
:
Sorting the nuclear proteome. Bioinform. 27(13): 7-14 (2011) - [j27]Robert C. McLeay, Chris J. Leat, Timothy L. Bailey:
Tissue-specific prediction of directly regulated genes. Bioinform. 27(17): 2354-2360 (2011) - 2010
- [j26]Fabian A. Buske, Mikael Bodén
, Denis C. Bauer
, Timothy L. Bailey:
Assigning roles to DNA regulatory motifs using comparative genomics. Bioinform. 26(7): 860-866 (2010) - [j25]Robert C. McLeay, Timothy L. Bailey:
Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data. BMC Bioinform. 11: 165 (2010) - [j24]Timothy L. Bailey, Mikael Bodén
, Tom Whitington, Philip Machanick
:
The value of position-specific priors in motif discovery using MEME. BMC Bioinform. 11: 179 (2010) - [j23]Denis C. Bauer
, Fabian A. Buske, Timothy L. Bailey:
Dual-functioning transcription factors in the developmental gene network of Drosophila melanogaster. BMC Bioinform. 11: 366 (2010) - [j22]Denis C. Bauer
, Fabian A. Buske, Timothy L. Bailey, Mikael Bodén
:
Predicting SUMOylation sites in developmental transcription factors of Drosophila melanogaster. Neurocomputing 73(13-15): 2300-2307 (2010) - [j21]Mikael Bodén
, Graham Dellaire
, Kevin Burrage
, Timothy L. Bailey:
A Bayesian Network Model of Proteins' Association with Promyelocytic Leukemia (PML) Nuclear Bodies. J. Comput. Biol. 17(4): 617-630 (2010) - [c8]Kengo Sato
, Tom Whitington, Timothy L. Bailey, Paul Horton:
Improved prediction of transcription binding sites from chromatin modification data. CIBCB 2010: 1-7
2000 – 2009
- 2009
- [j20]John Hawkins
, Charles E. Grant, William Stafford Noble, Timothy L. Bailey:
Assessing phylogenetic motif models for predicting transcription factor binding sites. Bioinform. 25(12) (2009) - [j19]Denis C. Bauer
, Timothy L. Bailey:
Optimizing static thermodynamic models of transcriptional regulation. Bioinform. 25(13): 1640-1646 (2009) - [j18]Timothy L. Bailey, Mikael Bodén
, Fabian A. Buske, Martin C. Frith
, Charles E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William Stafford Noble:
MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37(Web-Server-Issue): 202-208 (2009) - 2008
- [j17]Denis C. Bauer
, Timothy L. Bailey:
STREAM: Static Thermodynamic REgulAtory Model of transcription. Bioinform. 24(21): 2544-2545 (2008) - [j16]Denis C. Bauer
, Timothy L. Bailey:
Studying the functional conservation of cis-regulatory modules and their transcriptional output. BMC Bioinform. 9 (2008) - [j15]Martin C. Frith
, Neil F. W. Saunders
, Bostjan Kobe
, Timothy L. Bailey:
Discovering Sequence Motifs with Arbitrary Insertions and Deletions. PLoS Comput. Biol. 4(5) (2008) - [c7]John Hawkins
, Timothy L. Bailey:
The Statistical Power of Phylogenetic Motif Models. RECOMB 2008: 112-126 - 2007
- [j14]Emma Redhead, Timothy L. Bailey:
Discriminative motif discovery in DNA and protein sequences using the DEME algorithm. BMC Bioinform. 8 (2007) - 2006
- [j13]Mikael Bodén
, Timothy L. Bailey:
Identifying sequence regions undergoing conformational change via predicted continuum secondary structure. Bioinform. 22(15): 1809-1814 (2006) - [j12]Mikael Bodén
, Zheng Yuan, Timothy L. Bailey:
Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures. BMC Bioinform. 7: 68 (2006) - [j11]Stefan M. Stanley, Timothy L. Bailey, John S. Mattick
:
GONOME: measuring correlations between GO terms and genomic positions. BMC Bioinform. 7: 94 (2006) - [j10]Timothy L. Bailey, Nadya Williams, Chris Misleh, Wilfred W. Li:
MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res. 34(Web-Server-Issue): 369-373 (2006) - 2003
- [j9]Timothy L. Bailey, Michael Gribskov
:
Estimating and Evaluating the Statistics of Gapped Local-Alignment Scores. J. Comput. Biol. 9(3): 575-593 (2003) - [c6]Timothy L. Bailey, William Stafford Noble:
Searching for statistically significant regulatory modules. ECCB 2003: 16-25 - 2000
- [j8]Timothy L. Bailey, Michael Gribskov:
Concerning the accuracy of MAST E-values. Bioinform. 16(5): 488-489 (2000)
1990 – 1999
- 1999
- [j7]William Noble Grundy, Timothy L. Bailey:
Family pairwise search with embedded motif models. Bioinform. 15(6): 463-470 (1999) - [c5]Timothy L. Bailey, William Noble Grundy:
Classifying proteins by family using the product of correlated p-values. RECOMB 1999: 10-14 - [p1]Timothy L. Bailey, Michael E. Baker, Charles Elkan, William Noble Grundy:
MEME, MAST, and Meta-MEME: New Tools for Motif Discovery in Protein Sequences. Pattern Discovery in Biomolecular Data 1999: 30-54 - 1998
- [j6]Timothy L. Bailey, Michael Gribskov:
Combining evidence using p-values: application to sequence homology searches. Bioinform. 14(1): 48-54 (1998) - [j5]Timothy L. Bailey, Michael Gribskov:
Methods and Statistics for Combining Motif Match Scores. J. Comput. Biol. 5(2): 211-221 (1998) - 1997
- [j4]William Noble Grundy, Timothy L. Bailey, Charles Elkan, Michael E. Baker:
Meta-MEME: motif-based hidden Markov models of protein families. Comput. Appl. Biosci. 13(4): 397-406 (1997) - [j3]Timothy L. Bailey, Michael Gribskov
:
Score Distributions for Simultaneous Matching to Multiple Motifs. J. Comput. Biol. 4(1): 45-59 (1997) - 1996
- [j2]William Noble Grundy, Timothy L. Bailey, Charles Elkan:
ParaMEME: a parallel implementation and a web interface for a DNA and protein motif discovery tool. Comput. Appl. Biosci. 12(4): 303-310 (1996) - [c4]Timothy L. Bailey, Michael Gribskov:
The Megaprior Heuristic for Discovering Protein Sequence Patterns. ISMB 1996: 15-24 - 1995
- [j1]Timothy L. Bailey, Charles Elkan:
Unsupervised Learning of Multiple Motifs in Biopolymers Using Expectation Maximization. Mach. Learn. 21(1-2): 51-80 (1995) - [c3]Timothy L. Bailey, Charles Elkan:
The Value of Prior Knowledge in Discovering Motifs with MEME. ISMB 1995: 21-29 - 1994
- [c2]Timothy L. Bailey, Charles Elkan:
Fitting a Mixture Model By Expectation Maximization To Discover Motifs In Biopolymer. ISMB 1994: 28-36 - 1993
- [c1]Timothy L. Bailey, Charles Elkan:
Estimating the Accuracy of Learned Concepts. IJCAI 1993: 895-901
Coauthor Index

manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2025-01-09 13:01 CET by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint