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Mario Medvedovic
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2020 – today
- 2022
- [j16]John Erol Evangelista
, Daniel J. B. Clarke
, Zhuorui Xie, Alexander Lachmann
, Minji Jeon, Kerwin Chen, Kathleen M. Jagodnik, Sherry L. Jenkins, Maxim V. Kuleshov, Megan L. Wojciechowicz, Stephan C. Schürer, Mario Medvedovic
, Avi Ma'ayan
:
SigCom LINCS: data and metadata search engine for a million gene expression signatures. Nucleic Acids Res. 50(W1): 697-709 (2022) - 2020
- [j15]Yan Ren, Siva Sivaganesan, Nicholas A. Clark
, Lixia Zhang, Jacek Biesiada, Wen Niu, David R. Plas, Mario Medvedovic
:
Predicting mechanism of action of cellular perturbations with pathway activity signatures. Bioinform. 36(18): 4781-4788 (2020) - [j14]Vasileios Stathias, John Paul Turner, Amar Koleti, Dusica Vidovic, Daniel J. Cooper, Mehdi Fazel-Najafabadi, Marcin Pilarczyk, Raymond Terryn, Caty Chung, Afoma Umeano, Daniel J. B. Clarke
, Alexander Lachmann, John Erol Evangelista
, Avi Ma'ayan
, Mario Medvedovic
, Stephan C. Schürer
:
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures. Nucleic Acids Res. 48(Database-Issue): D431-D439 (2020) - [j13]Behrouz Shamsaei, Szymon Chojnacki, Marcin Pilarczyk, Mehdi Fazel-Najafabadi, Wen Niu, Chuming Chen
, Karen Ross, Andrea Matlock, Jeremy Muhlich
, Somchai Chutipongtanate
, Jie Zheng, John Turner, Dusica Vidovic, Jake Jaffe, Michael J. MacCoss, Cathy Wu
, Ajay Pillai
, Avi Ma'ayan
, Stephan C. Schürer
, Michal Kouril, Mario Medvedovic
, Jarek Meller
:
piNET: a versatile web platform for downstream analysis and visualization of proteomics data. Nucleic Acids Res. 48(Webserver-Issue): W85-W93 (2020)
2010 – 2019
- 2018
- [j12]Amar Koleti, Raymond Terryn, Vasileios Stathias, Caty Chung, Daniel J. Cooper
, John Paul Turner, Dusica Vidovic, Michele Forlin, Tanya T. Kelley, Alessandro D'Urso, Bryce K. Allen, Denis Torre
, Kathleen M. Jagodnik, Lily Wang
, Sherry L. Jenkins
, Christopher Mader, Wen Niu, Mehdi Fazel, Naim Al Mahi
, Marcin Pilarczyk, Nicholas A. Clark
, Behrouz Shamsaei, Jarek Meller
, Juozas Vasiliauskas, John Reichard
, Mario Medvedovic, Avi Ma'ayan
, Ajay Pillai
, Stephan C. Schürer
:
Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data. Nucleic Acids Res. 46(Database-Issue): D558-D566 (2018) - 2013
- [j11]Jing Chen
, Zhen Hu, Mukta Phatak, John Reichard
, Johannes M. Freudenberg
, Siva Sivaganesan, Mario Medvedovic:
Genome-Wide Signatures of Transcription Factor Activity: Connecting Transcription Factors, Disease, and Small Molecules. PLoS Comput. Biol. 9(9) (2013) - 2011
- [j10]Johannes M. Freudenberg
, Siva Sivaganesan, Mukta Phatak, Kaustubh Shinde, Mario Medvedovic:
Generalized random set framework for functional enrichment analysis using primary genomics datasets. Bioinform. 27(1): 70-77 (2011) - [j9]Vineet K. Joshi, Johannes M. Freudenberg
, Zhen Hu, Mario Medvedovic:
WebGimm: An integrated web-based platform for cluster analysis, functional analysis, and interactive visualization of results. Source Code Biol. Medicine 6: 3 (2011) - 2010
- [j8]Johannes M. Freudenberg
, Siva Sivaganesan, Michael Wagner
, Mario Medvedovic:
A semi-parametric Bayesian model for unsupervised differential co-expression analysis. BMC Bioinform. 11: 234 (2010) - [c2]Zhen Hu, Siva Sivaganesan, Mario Medvedovic:
Prior Information Based Bayesian Infinite Mixture Model. ISAIM 2010
2000 – 2009
- 2009
- [j7]Maureen A. Sartor, George D. Leikauf
, Mario Medvedovic:
LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data. Bioinform. 25(2): 211-217 (2009) - [j6]Johannes M. Freudenberg
, Vineet K. Joshi, Zhen Hu, Mario Medvedovic:
CLEAN: CLustering Enrichment ANalysis. BMC Bioinform. 10 (2009) - 2007
- [j5]Xiangdong Liu, Walter J. Jessen
, Siva Sivaganesan, Bruce J. Aronow, Mario Medvedovic:
Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data. BMC Bioinform. 8 (2007) - 2006
- [j4]Xiangdong Liu, Siva Sivaganesan, Ka Yee Yeung, Junhai Guo, Roger Eugene Bumgarner, Mario Medvedovic:
Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset. Bioinform. 22(14): 1737-1744 (2006) - [j3]Maureen A. Sartor, Craig R. Tomlinson
, Scott C. Wesselkamper, Siva Sivaganesan, George D. Leikauf
, Mario Medvedovic:
Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments. BMC Bioinform. 7: 538 (2006) - 2004
- [j2]Mario Medvedovic, Ka Yee Yeung, Roger Eugene Bumgarner:
Bayesian mixture model based clustering of replicated microarray data. Bioinform. 20(8): 1222-1232 (2004) - [c1]Mario Medvedovic, Junhai Guo:
Bayesian Model-Averaging in Unsupervised Learning From Microarray Data. BIOKDD 2004: 40-47 - 2002
- [j1]Mario Medvedovic, Siva Sivaganesan:
Bayesian infinite mixture model based clustering of gene expression profiles. Bioinform. 18(9): 1194-1206 (2002)
Coauthor Index
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last updated on 2024-04-24 23:11 CEST by the dblp team
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