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Journal Articles
- 2024
[j10]Yolanda M. B. Marcello, Daner Acunha Silveira, Shantanu Gupta, José Carlos Merino Mombach
:
PTEN expression can be used as a switch between senescence and apoptosis in breast cancer cells according to a logical model of the G2/M checkpoint. Biosyst. 235: 105097 (2024)- 2022
- [j9]Daner Acunha Silveira, Shantanu Gupta, Marialva Sinigaglia, José Carlos Merino Mombach:
The Wnt pathway can stabilize hybrid phenotypes in the epithelial-mesenchymal transition: A logical modeling approach. Comput. Biol. Chem. 99: 107714 (2022) - 2019
- [j8]Veronica V. Rossato, Daner Acunha Silveira, Shantanu Gupta, José Carlos Merino Mombach:
Towards the contribution of the p38MAPK pathway to the dual role of TGFβ in cancer: A boolean model approach. Comput. Biol. Medicine 104: 235-240 (2019) - 2016
- [j7]Carla A. R. S. Fontoura, Gastone C. Castellani, José C. M. Mombach:
The R implementation of the CRAN package PATHChange, a tool to study genetic pathway alterations in transcriptomic data. Comput. Biol. Medicine 78: 76-80 (2016) - 2009
- [j6]Mauro A. A. Castro, José L. Rybarczyk Filho, Rodrigo J. S. Dalmolin, Marialva Sinigaglia, José C. F. Moreira, José C. M. Mombach, Rita M. C. de Almeida:
ViaComplex: software for landscape analysis of gene expression networks in genomic context. Bioinform. 25(11): 1468-1469 (2009) - 2007
- [j5]Marcelo Cezar Pinto, Luciana Foss, José Carlos Merino Mombach, Leila Ribeiro:
Modelling, property verification and behavioural equivalence of lactose operon regulation. Comput. Biol. Medicine 37(2): 134-148 (2007) - 2006
- [j4]Marcos A. Knewitz, José C. M. Mombach:
Computer simulation of the influence of cellular adhesion on the morphology of the interface between tissues of proliferating and quiescent cells. Comput. Biol. Medicine 36(1): 59-69 (2006) - [j3]José C. M. Mombach, Ney Lemke, Norma M. da Silva, Rejane A. Ferreira, Eduardo Isaia, Cláudia K. Barcellos:
Bioinformatics analysis of mycoplasma metabolism: Important enzymes, metabolic similarities, and redundancy. Comput. Biol. Medicine 36(5): 542-552 (2006) - 2005
- [j2]Éder Gusatto, José C. M. Mombach, Fernando Piccini Cercato, Gerson G. H. Cavalheiro:
An Efficient Parallel Algorithm to Evolve Simulations of the Cellular Potts Model. Parallel Process. Lett. 15(1-2): 199-208 (2005) - 2004
- [j1]Ney Lemke, Fabiana Herédia, Cláudia K. Barcellos, Adriana Neves dos Reis, José C. M. Mombach:
Essentiality and damage in metabolic networks. Bioinform. 20(1): 115-119 (2004)
Conference and Workshop Papers
- 2009
- [c6]Giovani Rubert Librelotto, José Carlos Merino Mombach, Marialva Sinigaglia, Éder Simão, Heleno Borges Cabral, Mauro A. A. Castro:
An Ontology to Integrate Transcriptomics and Interatomics Data Involved in Gene Pathways of Genome Stability. BSB 2009: 164-167 - 2006
- [c5]Fernando Piccini Cercato, José C. M. Mombach, Gerson G. H. Cavalheiro:
High Performance Simulations of the Cellular Potts Model. HPCS 2006: 28 - 2005
- [c4]Marcelo Cezar Pinto, Luciana Foss, José C. M. Mombach, Leila Ribeiro:
Modeling and Property Verification of Lactose Operon Regulation. BSB 2005: 95-106 - 2004
- [c3]Eduardo Battistella, José Souza, Cláudia K. Barcellos, Ney Lemke, José C. M. Mombach:
An Integrated Model for Cellular Analysis. WOB 2004: 1-8 - 2003
- [c2]Ney Lemke, Fabiana Herédia, Cláudia K. Barcellos, José C. M. Mombach:
A Method to Identify Essential Enzymes in the Metabolism: Application to Escherichia Coli. CMSB 2003: 142-148 - 2002
- [c1]Adriana Neves dos Reis, Cláudia K. Barcellos, Fabiana Herédia, Jean J. Schmith, José C. M. Mombach, Ney Lemke, Rejane A. Ferreira:
Analysis of Functional Interactions of Enzymes in Mycoplasma pneumoniae. WOB 2002: 64-71
Informal and Other Publications
- 2023
- [i1]Tiago de Souza Farias, Vitor Vaz Schultz, José Carlos Merino Mombach, Jonas Maziero:
A differentiable programming framework for spin models. CoRR abs/2304.01772 (2023)
Coauthor Index
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