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ORCIDMichiel J. L. de Hoon
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2020 – today
- 2021
[j10]Imad Abugessaisa
, Jordan A. Ramilowski, Marina Lizio, Jesicca Severin, Akira Hasegawa, Jayson Harshbarger, Atsushi Kondo, Shuhei Noguchi, Chi Wai Yip, Jasmine Li Ching Ooi, Michihira Tagami, Fumi Hori, Saumya Agrawal, Chung-Chau Hon, Mélissa Cardon, Shuya Ikeda, Hiromasa Ono, Hidemasa Bono, Masaki Kato, Kosuke Hashimoto, Alessandro Bonetti, Norio Kobayashi, Jay W. Shin, Michiel J. L. de Hoon, Yoshihide Hayashizaki, Piero Carninci, Hideya Kawaji, Takeya Kasukawa:
FANTOM enters 20th year: expansion of transcriptomic atlases and functional annotation of non-coding RNAs. Nucleic Acids Res. 49(Database-Issue): D892-D898 (2021)
2010 – 2019
- 2019
- [j9]Marina Lizio, Imad Abugessaisa, Shuhei Noguchi, Atsushi Kondo, Akira Hasegawa, Chung-Chau Hon, Michiel J. L. de Hoon, Jessica Severin, Shinya Oki, Yoshihide Hayashizaki, Piero Carninci, Takeya Kasukawa, Hideya Kawaji:
Update of the FANTOM web resource: expansion to provide additional transcriptome atlases. Nucleic Acids Res. 47(Database-Issue): D752-D758 (2019) - 2017
- [j8]Trisevgeni Rapakoulia, Xin Gao, Yi Huang, Michiel J. L. de Hoon, Mariko Okada-Hatakeyama, Harukazu Suzuki, Erik Arner:
Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment. Bioinform. 33(23): 3696-3700 (2017) - 2016
- [j7]Hans Ienasescu, Kang Li, Robin Andersson, Morana Vitezic, Sarah Rennie, Yun Chen, Kristoffer Vitting-Seerup, Emil Lagoni, Mette Boyd, Jette Bornholdt, Michiel J. L. de Hoon, Hideya Kawaji, Timo Lassmann, Fantom Consortium, Yoshihide Hayashizaki, Alistair R. R. Forrest, Piero Carninci, Albin Sandelin:
On-the-fly selection of cell-specific enhancers, genes, miRNAs and proteins across the human body using SlideBase. Database J. Biol. Databases Curation 2016 (2016) - 2011
- [c7]Yasumasa Kimura, Michiel J. L. de Hoon, Shintaro Aoki, Yuri Ishizu, Carsten O. Daub, Alexander Lezhava, Erik Arner, Yoshihide Hayashizaki, Yuki Kawai, Yasushi Kogo:
Optimization of turn-back primers in isothermal amplification. BIBM Workshops 2011: 909-911
2000 – 2009
- 2009
- [j6]Peter J. A. Cock, Tiago Rodrigues Antao, Jeffrey T. Chang, Brad A. Chapman, Cymon J. Cox, Andrew Dalke, Iddo Friedberg, Thomas Hamelryck, Frank Kauff, Bartek Wilczynski, Michiel J. L. de Hoon:
Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinform. 25(11): 1422-1423 (2009) - [j5]Takehiro Hashimoto, Michiel J. L. de Hoon, Sean M. Grimmond, Carsten O. Daub, Yoshihide Hayashizaki, Geoffrey J. Faulkner:
Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite. Bioinform. 25(19): 2613-2614 (2009) - 2008
- [j4]Nicolas Sierro, Yuko Makita, Michiel J. L. de Hoon, Kenta Nakai:
DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. Nucleic Acids Res. 36(Database-Issue): 93-96 (2008) - 2007
- [j3]Yuko Makita, Michiel J. L. de Hoon, Antoine Danchin:
Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes. BMC Bioinform. 8 (2007) - 2005
- [j2]Michiel J. L. de Hoon, Yuko Makita, Kenta Nakai, Satoru Miyano:
Prediction of Transcriptional Terminators in Bacillus subtilis and Related Species. PLoS Comput. Biol. 1(3) (2005) - [c6]Yuko Makita, Michiel J. L. de Hoon, Naotake Ogasawara, Satoru Miyano, Kenta Nakai:
Bayesian Joint Prediction of Associated Transcription Factors in Bacillus subtilis. Pacific Symposium on Biocomputing 2005 - [c5]Michiel J. L. de Hoon, Dennis Vitkup:
Comparative Systems Biology of the Sporulation Initiation Network in Prokaryotes. Systems Biology and Regulatory Genomics 2005: 62-69 - 2004
- [c4]Michiel J. L. de Hoon, Yuko Makita, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Kenta Nakai, Satoru Miyano:
Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data. ISMB/ECCB (Supplement of Bioinformatics) 2004: 101-108 - [c3]Michiel J. L. de Hoon, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Satoru Miyano:
Predicting the Operon Structure of Bacillus subtilis Using Operon Length, Intergene Distance, and Gene Expression Information. Pacific Symposium on Biocomputing 2004: 276-287 - 2003
- [c2]Michiel J. L. de Hoon, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Satoru Miyano:
Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data of Bacillus Subtilis Using Differential Equations. Pacific Symposium on Biocomputing 2003: 17-28 - 2002
- [j1]Michiel J. L. de Hoon, Seiya Imoto, Satoru Miyano:
Statistical analysis of a small set of time-ordered gene expression data using linear splines. Bioinform. 18(11): 1477-1485 (2002) - [c1]Michiel J. L. de Hoon, Seiya Imoto, Satoru Miyano:
Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data Using Differential Equations. Discovery Science 2002: 267-274
Coauthor Index
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