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2020 – today
- 2025
[j20]Siqi Wei
, Christo Sasi, Jelle Piepenbrock, Martijn A. Huynen, Peter A. C. 't Hoen:
The use of knowledge graphs for drug repurposing: From classical machine learning algorithms to graph neural networks. Comput. Biol. Medicine 196: 110873 (2025)- 2024
- [j19]Xiaofeng Liao, Thomas H. A. Ederveen, Anna Niehues, Casper de Visser, Junda Huang, Firdaws Badmus, Cenna Doornbos, Yuliia Orlova, Purva Kulkarni, K. Joeri van der Velde, Morris A. Swertz, Martin Brandt, Alain J. van Gool, Peter A. C. 't Hoen:
FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis. J. Biomed. Semant. 15(1): 20 (2024) - [c6]Xiaofeng Liao, Coos Baakman, Kees Burger, Luiz Olavo Bonino da Silva Santos, Peter A. C. 't Hoen:
Ontology enhanced FAIR Data Point searches. SWAT4HCLS 2024: 140-144 - [c5]Xiaofeng Liao, Yuliia Orlova, Cenna Doornbos, Anna Niehues, Casper de Visser, Junda Huang, Thomas H. A. Ederveen, Purva Kulkarni, K. Joeri van der Velde, Morris A. Swertz, Martin Brandt, Alain J. van Gool, Peter A. C. 't Hoen:
FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis. SWAT4HCLS 2024: 206-207 - 2023
- [j18]Philip van Damme, Pablo Alarcón Moreno, César Henrique Bernabé, Alberto Cámara Ballesteros, Clémence M. A. Le Cornec, Bruna dos Santos Vieira, K. Joeri van der Velde, Shuxin Zhang, Claudio Carta, Ronald Cornet, Peter A. C. 't Hoen, Annika Jacobsen, Morris A. Swertz, Marco Roos, Nirupama Benis:
A Resource for Guiding Data Stewards to Make European Rare Disease Patient Registries FAIR. Data Sci. J. 22 (2023) - [j17]Casper de Visser, Lennart F. Johansson, Purva Kulkarni, Hailiang Mei, Pieter B. T. Neerincx, K. Joeri van der Velde, Peter Horvatovich, Alain J. van Gool, Morris A. Swertz, Peter A. C. 't Hoen, Anna Niehues:
Ten quick tips for building FAIR workflows. PLoS Comput. Biol. 19(9) (2023) - 2021
- [j16]Martijn G. Kersloot, Annika Jacobsen, Karlijn H. J. Groenen, Bruna dos Santos Vieira, Rajaram Kaliyaperumal, Ameen Abu-Hanna, Ronald Cornet, Peter A. C. 't Hoen, Marco Roos, Leo J. Schultze Kool, Derk L. Arts:
De-novo FAIRification via an Electronic Data Capture system by automated transformation of filled electronic Case Report Forms into machine-readable data. J. Biomed. Informatics 122: 103897 (2021) - 2020
- [c4]Bruna dos Santos Vieira, Karlijn H. J. Groenen, Peter A. C. 't Hoen, Annika Jacobsen, Marco Roos, Rajaram Kaliyaperumal, Martijn G. Kersloot, Ronald Cornet, Leo J. Schultze Kool:
Applying the FAIR Data Principles to the Registry of Vascular Anomalies (VASCA). dHealth 2020: 115-116
2010 – 2019
- 2017
- [c3]Tareq B. Malas, Roman Kudrin, Sergei Starikov, Dorien Peters, Marco Roos, Peter A. C. 't Hoen, Kristina M. Hettne:
Semantic Knowledge Graph Network Features for Drug Repurposing. SWAT4LS 2017 - 2016
- [j15]Veronica Vinciotti, Ernst C. Wit, Rick Jansen, Eco J. C. de Geus, Brenda W. J. H. Penninx, Dorret I. Boomsma, Peter A. C. 't Hoen:
Consistency of biological networks inferred from microarray and sequencing data. BMC Bioinform. 17: 254 (2016) - 2015
- [c2]Eelke van der Horst, Rajaram Kaliyaperumal, Zuotian Tatum, Mark Thompson, Erik A. Schultes, Eleni Mina, Ivo Fokkema, Johan T. den Dunnen, Marco Roos, Jeroen F. J. Laros, Barend Mons, Kristina M. Hettne, Peter A. C. 't Hoen:
Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites. SWAT4LS 2015: 2-12 - 2014
- [j14]Kristina M. Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A. C. 't Hoen, Sean Bechhofer, Carole A. Goble, Marco Roos:
Structuring research methods and data with the research object model: genomics workflows as a case study. J. Biomed. Semant. 5: 41 (2014) - [j13]Beibei Ru, Peter A. C. 't Hoen, Fulei Nie, Hao Lin, Feng-Biao Guo, Jian Huang:
Phd7faster: Predicting Clones Propagating Faster from the pH.D.-7 phage Display peptide Library. J. Bioinform. Comput. Biol. 12(1) (2014) - 2013
- [j12]Yanchun Bao, Veronica Vinciotti, Ernst Wit, Peter A. C. 't Hoen:
Accounting for immunoprecipitation efficiencies in the statistical analysis of ChIP-seq data. BMC Bioinform. 14: 169 (2013) - [i1]Kristina M. Hettne, Harish Dharuri, Jun Zhao, Katherine Wolstencroft, Khalid Belhajjame, Stian Soiland-Reyes, Eleni Mina, Mark Thompson, Don Cruickshank, Lourdes Verdes-Montenegro, Julián Garrido, David De Roure, Óscar Corcho, Graham Klyne, Reinout van Schouwen, Peter A. C. 't Hoen, Sean Bechhofer, Carole A. Goble, Marco Roos:
Structuring research methods and data with the Research Object model: genomics workflows as a case study. CoRR abs/1311.2789 (2013) - 2012
- [j11]Yanju Zhang, Eric-Wubbo Lameijer, Peter A. C. 't Hoen, Zemin Ning, P. Eline Slagboom, Kai Ye:
PASSion: a pattern growth algorithm-based pipeline for splice junction detection in paired-end RNA-Seq data. Bioinform. 28(4): 479-486 (2012) - 2011
- [j10]Rob Jelier, Jelle J. Goeman, Kristina M. Hettne, Martijn J. Schuemie, Johan T. den Dunnen, Peter A. C. 't Hoen:
Literature-aided interpretation of gene expression data with the weighted global test. Briefings Bioinform. 12(5): 518-529 (2011) - [j9]Peter A. C. 't Hoen, Michael Hirsch, Emile J. de Meijer, Renée X. de Menezes, Gert-Jan B. van Ommen, Johan T. den Dunnen:
mRNA degradation controls differentiation state-dependent differences in transcript and splice variant abundance. Nucleic Acids Res. 39(2): 556-566 (2011) - [j8]Seyed Yahya Anvar, Allan Tucker, Veronica Vinciotti, Andrea Venema, Gert-Jan B. van Ommen, Silvere M. van der Maarel, Vered Raz, Peter A. C. 't Hoen:
Interspecies Translation of Disease Networks Increases Robustness and Predictive Accuracy. PLoS Comput. Biol. 7(11) (2011) - 2010
- [j7]Seyed Yahya Anvar, Peter A. C. 't Hoen, Allan Tucker:
The identification of informative genes from multiple datasets with increasing complexity. BMC Bioinform. 11: 32 (2010)
2000 – 2009
- 2009
- [j6]Emma Steele, Allan Tucker, Peter A. C. 't Hoen, Martijn J. Schuemie:
Literature-based priors for gene regulatory networks. Bioinform. 25(14): 1768-1774 (2009) - 2008
- [j5]Matthew S. Hestand, Michiel van Galen, Michel P. Villerius, Gert-Jan B. van Ommen, Johan T. den Dunnen, Peter A. C. 't Hoen:
CORE_TF: a user-friendly interface to identify evolutionary conserved transcription factor binding sites in sets of co-regulated genes. BMC Bioinform. 9 (2008) - [j4]Rob Jelier, Peter A. C. 't Hoen, Ellen Sterrenburg, Johan T. den Dunnen, Gert-Jan B. van Ommen, Jan A. Kors, Barend Mons:
Literature-aided meta-analysis of microarray data: a compendium study on muscle development and disease. BMC Bioinform. 9 (2008) - [j3]Alexander E. Ivliev, Peter A. C. 't Hoen, Michel P. Villerius, Johan T. den Dunnen, Bernd W. Brandt:
Microarray retriever: a web-based tool for searching and large scale retrieval of public microarray data. Nucleic Acids Res. 36(Web-Server-Issue): 327-331 (2008) - 2006
- [j2]Veronica Vinciotti, Xiaohui Liu, Rolf Turk, Emile J. de Meijer, Peter A. C. 't Hoen:
Exploiting the full power of temporal gene expression profiling through a new statistical test: Application to the analysis of muscular dystrophy data. BMC Bioinform. 7: 183 (2006) - [j1]Allan Tucker, Peter A. C. 't Hoen, Veronica Vinciotti, Xiaohui Liu:
Temporal Bayesian classifiers for modelling muscular dystrophy expression data. Intell. Data Anal. 10(5): 441-455 (2006) - 2005
- [c1]Allan Tucker, Veronica Vinciotti, Peter A. C. 't Hoen, Xiaohui Liu:
Bayesian Network Classifiers for Time-Series Microarray Data. IDA 2005: 475-485
Coauthor Index
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