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Janet M. Thornton
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- affiliation: European Molecular Biology Laboratory, UK
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2020 – today
- 2022
- [j70]M. Michael Gromiha
, Christine A. Orengo, Ramanathan Sowdhamini
, Janet M. Thornton
:
Srinivasan (1962-2021) in Bioinformatics and beyond. Bioinform. 38(8): 2377-2379 (2022) - [j69]Mihaly Varadi
, Stephen Anyango
, David R. Armstrong
, John M. Berrisford, Preeti Choudhary
, Mandar S. Deshpande
, Nurul Nadzirin, Sreenath Nair
, Lukás Pravda, Ahsan Tanweer
, Bissan Al-Lazikani
, Claudia Andreini
, Geoffrey J. Barton, David Bednar, Karel Berka
, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský
, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali
, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec
, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías
, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra
, Gerardo Pepe
, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy
, Atilio O. Rausch
, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato
, Pawel Rubach
, Luis Serrano, Gulzar Singh, Petr Skoda
, Carlos Oscar Sánchez Sorzano
, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton
, Michael J. E. Sternberg
, Christine A. Orengo, Sameer Velankar
:
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022) - [j68]Charles Abreu Santana, Sandro C. Izidoro
, Raquel Cardoso de Melo Minardi, Jonathan D. Tyzack, António J. M. Ribeiro
, Douglas E. V. Pires
, Janet M. Thornton
, Sabrina de Azevedo Silveira
:
GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs. Nucleic Acids Res. 50(W1): 392-397 (2022) - 2020
- [j67]Rodrigo Ochoa
, Mikhail D. Magnitov, Roman A. Laskowski
, Pilar Cossio, Janet M. Thornton
:
An automated protocol for modelling peptide substrates to proteases. BMC Bioinform. 21(1): 586 (2020) - [j66]Mihaly Varadi
, John M. Berrisford, Mandar S. Deshpande
, Sreenath Nair
, Aleksandras Gutmanas
, David R. Armstrong
, Lukás Pravda
, Bissan Al-Lazikani
, Stephen Anyango
, Geoffrey J. Barton, Karel Berka
, Tom L. Blundell, Neera Borkakoti
, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali
, Toby J. Gibson
, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas
, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar
, Emmanuel D. Levy, Fábio Madeira
, M. S. Madhusudhan, Henry J. Martell
, Stuart A. MacGowan
, Jake E. McGreig
, Saqib Mir, Abhik Mukhopadhyay, Luca Parca
, Typhaine Paysan-Lafosse
, Leandro G. Radusky, António J. M. Ribeiro
, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda
, Radka Svobodová Vareková
, Jonathan D. Tyzack
, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton
, Michael J. E. Sternberg
, Christine A. Orengo, Sameer Velankar
:
PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. 48(Database-Issue): D344-D353 (2020)
2010 – 2019
- 2019
- [j65]Abhik Mukhopadhyay
, Neera Borkakoti
, Lukás Pravda
, Jonathan D. Tyzack
, Janet M. Thornton
, Sameer Velankar
:
Finding enzyme cofactors in Protein Data Bank. Bioinform. 35(18): 3510-3511 (2019) - [j64]James D. Stephenson
, Roman A. Laskowski
, Andrew Nightingale, Matthew E. Hurles, Janet M. Thornton
:
VarMap: a web tool for mapping genomic coordinates to protein sequence and structure and retrieving protein structural annotations. Bioinform. 35(22): 4854-4856 (2019) - [j63]Ian Sillitoe, Natalie L. Dawson
, Tony E. Lewis, Sayoni Das
, Jonathan G. Lees, Paul Ashford
, Adeyelu Tolulope
, Harry M. Scholes
, Ilya Senatorov, Andra Bujan, Fatima Ceballos Rodriguez-Conde, Benjamin Dowling, Janet M. Thornton
, Christine A. Orengo:
CATH: expanding the horizons of structure-based functional annotations for genome sequences. Nucleic Acids Res. 47(Database-Issue): D280-D284 (2019) - [j62]Matías Fuentealba
, Handan Melike Dönertas
, Rhianna Williams, Johnathan Labbadia
, Janet M. Thornton
, Linda Partridge
:
Using the drug-protein interactome to identify anti-ageing compounds for humans. PLoS Comput. Biol. 15(1) (2019) - 2018
- [j61]Jonathan D. Tyzack
, António J. M. Ribeiro
, Neera Borkakoti
, Janet M. Thornton
:
Transform-MinER: transforming molecules in enzyme reactions. Bioinform. 34(20): 3597-3599 (2018) - [j60]António J. M. Ribeiro
, Gemma L. Holliday
, Nicholas Furnham
, Jonathan D. Tyzack
, Katherine Ferris, Janet M. Thornton
:
Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites. Nucleic Acids Res. 46(Database-Issue): D618-D623 (2018) - 2016
- [j59]Syed Asad Rahman
, Gilliean Torrance, Lorenzo Baldacci, Sergio Martínez Cuesta, Franz Fenninger, Nimish Gopal, Saket Choudhary
, John W. May, Gemma L. Holliday
, Christoph Steinbeck
, Janet M. Thornton
:
Reaction Decoder Tool (RDT): extracting features from chemical reactions. Bioinform. 32(13): 2065-2066 (2016) - 2015
- [j58]Matthias Ziehm
, Dobril K. Ivanov
, Aditi Bhat
, Linda Partridge
, Janet M. Thornton
:
SurvCurv database and online survival analysis platform update. Bioinform. 31(23): 3878-3880 (2015) - [j57]Ian Sillitoe, Tony E. Lewis, Alison L. Cuff, Sayoni Das
, Paul Ashford, Natalie L. Dawson
, Nicholas Furnham
, Roman A. Laskowski
, David A. Lee, Jonathan G. Lees, Sonja Lehtinen, Romain A. Studer
, Janet M. Thornton
, Christine A. Orengo:
CATH: comprehensive structural and functional annotations for genome sequences. Nucleic Acids Res. 43(Database-Issue): 376-381 (2015) - [j56]Nidhi Tyagi
, Edward J. Farnell
, Colin M. Fitzsimmons, Stephanie Ryan, Edridah M. Tukahebwa, Rick M. Maizels, David W. Dunne
, Janet M. Thornton
, Nicholas Furnham
:
Comparisons of Allergenic and Metazoan Parasite Proteins: Allergy the Price of Immunity. PLoS Comput. Biol. 11(10) (2015) - 2014
- [j55]Irene Papatheodorou
, Rudolfs Petrovs, Janet M. Thornton
:
Comparison of the mammalian insulin signalling pathway to invertebrates in the context of FOXO-mediated ageing. Bioinform. 30(21): 2999-3003 (2014) - [j54]Catherine Brooksbank
, Mary Todd Bergman, Rolf Apweiler
, Ewan Birney, Janet M. Thornton
:
The European Bioinformatics Institute's data resources 2014. Nucleic Acids Res. 42(Database-Issue): 18-25 (2014) - [j53]Tjaart A. P. de Beer
, Karel Berka
, Janet M. Thornton
, Roman A. Laskowski
:
PDBsum additions. Nucleic Acids Res. 42(Database-Issue): 292-296 (2014) - [j52]Nicholas Furnham
, Gemma L. Holliday
, Tjaart A. P. de Beer
, Julius O. B. Jacobsen
, William R. Pearson
, Janet M. Thornton
:
The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes. Nucleic Acids Res. 42(Database-Issue): 485-489 (2014) - 2013
- [j51]Ian Sillitoe, Alison L. Cuff, Benoit H. Dessailly, Natalie L. Dawson
, Nicholas Furnham
, David A. Lee, Jonathan G. Lees, Tony E. Lewis, Romain A. Studer
, Robert Rentzsch
, Corin Yeats, Janet M. Thornton
, Christine A. Orengo:
New functional families (FunFams) in CATH to improve the mapping of conserved functional sites to 3D structures. Nucleic Acids Res. 41(Database-Issue): 490-498 (2013) - [j50]Rafael Alcántara
, Joseph Onwubiko
, Hong Cao, Paula de Matos, Jennifer A. Cham
, Julius O. B. Jacobsen
, Gemma L. Holliday
, Julia D. Fischer, Syed Asad Rahman
, Bijay Jassal
, Mickael Goujon, Francis Rowland
, Sameer Velankar
, Rodrigo Lopez
, John P. Overington
, Gerard J. Kleywegt
, Henning Hermjakob
, Claire O'Donovan
, Maria Jesus Martin
, Janet M. Thornton
, Christoph Steinbeck
:
The EBI enzyme portal. Nucleic Acids Res. 41(Database-Issue): 773-780 (2013) - [j49]Tjaart A. P. de Beer
, Roman A. Laskowski
, Sarah L. Parks, Botond Sipos
, Nick Goldman
, Janet M. Thornton
:
Amino Acid Changes in Disease-Associated Variants Differ Radically from Variants Observed in the 1000 Genomes Project Dataset. PLoS Comput. Biol. 9(12) (2013) - 2012
- [j48]Nicholas Furnham
, Ian Sillitoe, Gemma L. Holliday
, Alison L. Cuff, Syed Asad Rahman
, Roman A. Laskowski
, Christine A. Orengo, Janet M. Thornton
:
FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies. Nucleic Acids Res. 40(Database-Issue): 776-782 (2012) - [j47]Nicholas Furnham
, Ian Sillitoe, Gemma L. Holliday
, Alison L. Cuff, Roman A. Laskowski
, Christine A. Orengo, Janet M. Thornton
:
Exploring the Evolution of Novel Enzyme Functions within Structurally Defined Protein Superfamilies. PLoS Comput. Biol. 8(3) (2012) - [c11]Tommi H. Nyrönen
, Jarno Laitinen, Olli Tourunen, Danny Sternkopf, Risto Laurikainen, Per Öster
, Pekka T. Lehtovuori, Timo A. Miettinen, Tomi Simonen, Teemu Perheentupa, Imre Vastrik, Olli-P. Kallioniemi, Andrew Lyall, Janet M. Thornton:
Delivering ICT infrastructure for biomedical research. WICSA/ECSA Companion Volume 2012: 37-44 - 2011
- [j46]Alison L. Cuff, Ian Sillitoe, Tony E. Lewis, Andrew B. Clegg, Robert Rentzsch
, Nicholas Furnham
, Marialuisa Pellegrini-Calace, David T. Jones, Janet M. Thornton
, Christine A. Orengo:
Extending CATH: increasing coverage of the protein structure universe and linking structure with function. Nucleic Acids Res. 39(Database-Issue): 420-426 (2011) - 2010
- [j45]Julia D. Fischer, Gemma L. Holliday
, Janet M. Thornton
:
The CoFactor database: organic cofactors in enzyme catalysis. Bioinform. 26(19): 2496-2497 (2010) - [j44]Catherine Brooksbank
, Graham Cameron, Janet M. Thornton
:
The European Bioinformatics Institute's data resources. Nucleic Acids Res. 38(Database-Issue): 17-25 (2010)
2000 – 2009
- 2009
- [j43]David Talavera
, Roman A. Laskowski
, Janet M. Thornton
:
WSsas: a web service for the annotation of functional residues through structural homologues. Bioinform. 25(9): 1192-1194 (2009) - [j42]Claudia Andreini
, Ivano Bertini, Gabriele Cavallaro, Gemma L. Holliday
, Janet M. Thornton
:
Metal-MACiE: a database of metals involved in biological catalysis. Bioinform. 25(16): 2088-2089 (2009) - [j41]Romina Oliva
, Janet M. Thornton
, Marialuisa Pellegrini-Calace:
PoreLogo: a new tool to analyse, visualize and compare channels in transmembrane proteins. Bioinform. 25(23): 3183-3184 (2009) - [j40]Syed Asad Rahman
, Matthew Bashton
, Gemma L. Holliday
, Rainer Schrader, Janet M. Thornton
:
Small Molecule Subgraph Detector (SMSD) toolkit. J. Cheminformatics 1: 12 (2009) - [j39]Antonio Macchiarulo
, Janet M. Thornton
, Irene Nobeli
:
Mapping Human Metabolic Pathways in the Small Molecule Chemical Space. J. Chem. Inf. Model. 49(10): 2272-2289 (2009) - [j38]Alison L. Cuff, Ian Sillitoe, Tony E. Lewis, Oliver Redfern
, Richard Garratt
, Janet M. Thornton
, Christine A. Orengo:
The CATH classification revisited - architectures reviewed and new ways to characterize structural divergence in superfamilies. Nucleic Acids Res. 37(Database-Issue): 310-314 (2009) - [j37]Marialuisa Pellegrini-Calace, Tim Maiwald
, Janet M. Thornton
:
PoreWalker: A Novel Tool for the Identification and Characterization of Channels in Transmembrane Proteins from Their Three-Dimensional Structure. PLoS Comput. Biol. 5(7) (2009) - [j36]John A. Capra, Roman A. Laskowski
, Janet M. Thornton
, Mona Singh
, Thomas A. Funkhouser:
Predicting Protein Ligand Binding Sites by Combining Evolutionary Sequence Conservation and 3D Structure. PLoS Comput. Biol. 5(12) (2009) - [c10]Janet M. Thornton:
ELIXIR - A European Infrastructure for Biological Information: Challenges and Progress. GI Jahrestagung 2009: 4 - 2008
- [j35]Gabrielle A. Reeves
, Karen Eilbeck, Michele Magrane
, Claire O'Donovan
, Luisa Montecchi-Palazzi, Midori A. Harris
, Sandra E. Orchard
, Rafael C. Jiménez
, Andreas Prlic
, Tim J. P. Hubbard, Henning Hermjakob
, Janet M. Thornton
:
The Protein Feature Ontology: a tool for the unification of protein feature annotations. Bioinform. 24(23): 2767-2772 (2008) - [j34]Matthew Bashton
, Irene Nobeli
, Janet M. Thornton
:
PROCOGNATE: a cognate ligand domain mapping for enzymes. Nucleic Acids Res. 36(Database-Issue): 618-622 (2008) - [c9]Rafael Najmanovich, Natalja Kurbatova
, Janet M. Thornton
:
Detection of 3D atomic similarities and their use in the discrimination of small molecule protein-binding sites. ECCB 2008: 105-111 - 2007
- [j33]Rafael Najmanovich, Abdellah Allali-Hassani, Richard J. Morris
, Ludmila Dombrovsky, Patricia W. Pan, Masoud Vedadi, Alexander N. Plotnikov, Aled M. Edwards
, Cheryl H. Arrowsmith
, Janet M. Thornton
:
Analysis of binding site similarity, small-molecule similarity and experimental binding profiles in the human cytosolic sulfotransferase family. Bioinform. 23(2): 104-109 (2007) - [j32]Abdullah Kahraman
, Richard J. Morris, Roman A. Laskowski
, Janet M. Thornton:
Variation of geometrical and physicochemical properties in protein binding pockets and their ligands. BMC Bioinform. 8(S-8) (2007) - [j31]Lesley H. Greene, Tony E. Lewis, Sarah Addou, Alison L. Cuff, Timothy Dallman, Mark Dibley, Oliver Redfern
, Frances M. G. Pearl
, Rekha Nambudiry, Adam James Reid, Ian Sillitoe, Corin Yeats, Janet M. Thornton
, Christine A. Orengo:
The CATH domain structure database: new protocols and classification levels give a more comprehensive resource for exploring evolution. Nucleic Acids Res. 35(Database-Issue): 291-297 (2007) - [j30]Gemma L. Holliday
, Daniel E. Almonacid
, Gail J. Bartlett, Noel M. O'Boyle
, James W. Torrance
, Peter Murray-Rust
, John B. O. Mitchell
, Janet M. Thornton
:
MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms. Nucleic Acids Res. 35(Database-Issue): 515-520 (2007) - [j29]Tom C. Freeman, Leon Goldovsky, Markus Brosch, Stijn van Dongen, Pierre Mazière, Russell J. Grocock, Shiri Freilich, Janet M. Thornton
, Anton J. Enright
:
Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data. PLoS Comput. Biol. 3(10) (2007) - [j28]Jonathan J. Ward, Janet M. Thornton
:
Evolutionary Models for Formation of Network Motifs and Modularity in the Saccharomyces Transcription Factor Network. PLoS Comput. Biol. 3(10) (2007) - 2005
- [j27]Richard J. Morris
, Rafael Najmanovich, Abdullah Kahraman
, Janet M. Thornton
:
Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. Bioinform. 21(10): 2347-2355 (2005) - [j26]Carles Ferrer-Costa, Hugh P. Shanahan
, Susan Jones, Janet M. Thornton
:
HTHquery: a method for detecting DNA-binding proteins with a helix-turn-helix structural motif. Bioinform. 21(18): 3679-3680 (2005) - [j25]Gemma L. Holliday
, Gail J. Bartlett, Daniel E. Almonacid
, Noel M. O'Boyle
, Peter Murray-Rust, Janet M. Thornton
, John B. O. Mitchell
:
MACiE: a database of enzyme reaction mechanisms. Bioinform. 21(23): 4315-4316 (2005) - [j24]Nicola D. Kerrison, Colin Selman, Steven J. Lingard, Janet M. Thornton, Linda Partridge, Dominic J. Withers:
Living longer by dieting: analysis of transcriptional response after caloric restriction. BMC Bioinform. 6(S-3) (2005) - [j23]Catherine Brooksbank
, Graham Cameron, Janet M. Thornton
:
The European Bioinformatics Institute's data resources: towards systems biology. Nucleic Acids Res. 33(Database-Issue): 46-53 (2005) - [j22]Frances M. G. Pearl
, Annabel E. Todd, Ian Sillitoe, Mark Dibley, Oliver Redfern
, Tony E. Lewis, Christopher Bennett, Russell L. Marsden, Alastair Grant, David A. Lee, Adrian Akpor, Michael Maibaum, Andrew P. Harrison, Timothy Dallman, Gabrielle A. Reeves
, Ilhem Diboun, Sarah Addou, Stefano Lise
, Caroline E. Johnston, Antonio Sillero, Janet M. Thornton
, Christine A. Orengo:
The CATH Domain Structure Database and related resources Gene3D and DHS provide comprehensive domain family information for genome analysis. Nucleic Acids Res. 33(Database-Issue): 247-251 (2005) - [j21]Roman A. Laskowski
, Victor V. Chistyakov, Janet M. Thornton
:
PDBsum more: new summaries and analyses of the known 3D structures of proteins and nucleic acids. Nucleic Acids Res. 33(Database-Issue): 266-268 (2005) - [j20]Roman A. Laskowski
, James D. Watson, Janet M. Thornton
:
ProFunc: a server for predicting protein function from 3D structure. Nucleic Acids Res. 33(Web-Server-Issue): 89-93 (2005) - 2004
- [j19]Hugh P. Shanahan
, Janet M. Thornton
:
An examination of the conservation of surface patch polarity for proteins. Bioinform. 20(14): 2197-2204 (2004) - [j18]James E. Bray
, Russell L. Marsden, Stuart C. G. Rison
, Alexei Savchenko, Aled M. Edwards
, Janet M. Thornton
, Christine A. Orengo:
A practical and robust sequence search strategy for structural genomics target selection. Bioinform. 20(14): 2288-2295 (2004) - [j17]Craig T. Porter, Gail J. Bartlett, Janet M. Thornton
:
The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data. Nucleic Acids Res. 32(Database-Issue): 129-133 (2004) - [c8]Jonathan A. Barker, Janet M. Thornton:
Software Engineering Challenges in Bioinformatics. ICSE 2004: 12-15 - [c7]Janet M. Thornton, David R. Gilbert, Catherine Brooksbank
:
ISMB/ECCB 2004. ISMB/ECCB (Supplement of Bioinformatics) 2004: 1-2 - [c6]Janet M. Thornton, David R. Gilbert, Catherine Brooksbank:
ISMB/ECCB 2004 Organization. ISMB/ECCB (Supplement of Bioinformatics) 2004: 3-5 - [c5]Richard A. George, Ruth V. Spriggs, Janet M. Thornton
, Bissan Al-Lazikani
, Mark B. Swindells:
SCOPEC: a database of protein catalytic domains. ISMB/ECCB (Supplement of Bioinformatics) 2004: 130-136 - [c4]Juan Garcia Ranea, Alastair Grant, Janet M. Thornton, Christine A. Orengo:
Microeconomic Principles Explain an Optimal Genome Size in Bacteria. Spanish Bioinformatics Conference 2004: 43 - 2003
- [j16]Jonathan A. Barker, Janet M. Thornton
:
An algorithm for constraint-based structural template matching: application to 3D templates with statistical analysis. Bioinform. 19(13): 1644-1649 (2003) - [j15]Andrew P. Harrison, Frances M. G. Pearl
, Ian Sillitoe, Tim Slidel, Richard Mott
, Janet M. Thornton
, Christine A. Orengo:
Recognizing the fold of a protein structure. Bioinform. 19(14): 1748-1759 (2003) - [j14]Frances M. G. Pearl
, C. F. Bennett, James E. Bray
, Andrew P. Harrison, Nigel J. Martin, Adrian J. Shepherd
, Ian Sillitoe, Janet M. Thornton
, Christine A. Orengo:
The CATH database: an extended protein family resource for structural and functional genomics. Nucleic Acids Res. 31(1): 452-455 (2003) - [j13]Daniel W. A. Buchan, Stuart C. G. Rison
, James E. Bray
, David A. Lee, Frances M. G. Pearl
, Janet M. Thornton
, Christine A. Orengo:
Gene3D: structural assignments for the biologist and bioinformaticist alike. Nucleic Acids Res. 31(1): 469-473 (2003) - [c3]Janet M. Thornton:
The proteome and the metabolome. ECCB 2003: 237 - 2002
- [j12]David R. Gilbert, David R. Westhead
, Juris Viksna
, Janet M. Thornton:
A Computer System to Perform Structure Comparison using Representations of Protein Structure. Comput. Chem. 26(1): 23-30 (2002) - 2001
- [j11]Irene Nobeli
, John B. O. Mitchell, Alexander Alex, Janet M. Thornton:
Evaluation of a knowledge-based potential of mean force for scoring docked protein-ligand complexes. J. Comput. Chem. 22(7): 673-688 (2001) - [j10]Frances M. G. Pearl
, Nigel J. Martin, James E. Bray
, Daniel W. A. Buchan, Andrew P. Harrison, David A. Lee, Gabrielle A. Reeves
, Adrian J. Shepherd
, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton
, Christine A. Orengo:
A rapid classification protocol for the CATH Domain Database to support structural genomics. Nucleic Acids Res. 29(1): 223-227 (2001) - [j9]Nicholas M. Luscombe, Roman A. Laskowski, Janet M. Thornton
:
Amino acid?base interactions: a three-dimensional analysis of protein?DNA interactions at an atomic level. Nucleic Acids Res. 29(13): 2860-2874 (2001) - 2000
- [j8]Frances M. G. Pearl
, David A. Lee, James E. Bray
, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton
, Christine A. Orengo:
Assigning genomic sequences to CATH. Nucleic Acids Res. 28(1): 277-282 (2000) - [c2]David R. Gilbert, David R. Westhead, Janet M. Thornton, Karine Yvon:
Une technique déclarative pour filtrer des motifs topologiques de protéines. JFPLC 2000: 165-
1990 – 1999
- 1999
- [j7]David R. Gilbert, David R. Westhead
, Nozomi Nagano
, Janet M. Thornton
:
Motif-based searching in TOPS protein topology databases. Bioinform. 15(4): 317-326 (1999) - [j6]John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Janet M. Thornton:
BLEEP - potential of mean force describing protein-ligand interactions: I. Generating potential. J. Comput. Chem. 20(11): 1165-1176 (1999) - [j5]John B. O. Mitchell, Roman A. Laskowski, Alexander Alex, Mark J. Forster, Janet M. Thornton:
BLEEP - potential of mean force describing protein-ligand interactions: II. Calculation of binding energies and comparison with experimental data. J. Comput. Chem. 20(11): 1177-1185 (1999) - [j4]Christine A. Orengo, Frances M. G. Pearl
, James E. Bray
, Annabel E. Todd, A. C. Martin, Loredana Lo Conte, Janet M. Thornton
:
The CATH Database provides insights into protein structure/function relationships. Nucleic Acids Res. 27(1): 275-279 (1999) - 1998
- [j3]Fabio Zuccotto
, Andrew C. R. Martin
, Roman A. Laskowski, Janet M. Thornton
, Ian H. Gilbert
:
Dihydrofolate reductase: A potential drug target in trypanosomes and leishmania. J. Comput. Aided Mol. Des. 12(3): 241-257 (1998) - [c1]Janet M. Thornton, Andrew C. R. Martin, Christine A. Orengo, Duncan Milburn, Roman A. Laskowski:
[Invited Lecture] Protein Folds and Functions. German Conference on Bioinformatics 1998 - 1993
- [j2]David T. Jones, Janet M. Thornton
:
Protein fold recognition. J. Comput. Aided Mol. Des. 7(4): 439-456 (1993) - 1992
- [j1]David T. Jones, William R. Taylor, Janet M. Thornton
:
The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8(3): 275-282 (1992)
Coauthor Index
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last updated on 2024-05-08 21:42 CEST by the dblp team
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