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2020 – today
- 2023
[j25]Xinran Wang
, Zeyun Lu, Arjun Bhattacharya, Bogdan Pasaniuc, Nicholas Mancuso:
twas_sim, a Python-based tool for simulation and power analysis of transcriptome-wide association analysis. Bioinform. 39(5) (2023)- 2021
- [j24]Arunabha Majumdar, Kathryn S. Burch, Tanushree Haldar, Sriram Sankararaman, Bogdan Pasaniuc, W. James Gauderman, John S. Witte:
A two-step approach to testing overall effect of gene-environment interaction for multiple phenotypes. Bioinform. 36(24): 5640-5648 (2021) - [j23]Filipp Rondel, Roya Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Yuri Porozov, Alexander Zelikovsky:
Pipeline for Analyzing Activity of Metabolic Pathways in Planktonic Communities Using Metatranscriptomic Data. J. Comput. Biol. 28(8): 842-855 (2021) - [j22]Arunabha Majumdar, Claudia Giambartolomei, Na Cai, Tanushree Haldar, Tommer Schwarz, Michael J. Gandal, Jonathan Flint, Bogdan Pasaniuc:
Leveraging eQTLs to identify individual-level tissue of interest for a complex trait. PLoS Comput. Biol. 17(5) (2021) - [j21]Ruth Johnson, Kathryn S. Burch, Kangcheng Hou, Mario Paciuc, Bogdan Pasaniuc, Sriram Sankararaman:
Estimation of regional polygenicity from GWAS provides insights into the genetic architecture of complex traits. PLoS Comput. Biol. 17(10) (2021) - [c10]Kritika Singh, Gita Pathak, Tyne Miller-Flemming, Frank Wendt, Nava Ehsan, Kangcheng Hou, Ruth Johnson, Zeyun Lu, Shyamalika Gopalan, Loic Yang, Pejman Mohammadi, Bogdan Pasaniuc, Renato Polimanti, Lea Davis, Nicholas Mancuso:
Integrative Analyses Identify Susceptibility Genes Underlying COVID-19 Hospitalization. AMIA 2021 - 2020
- [c9]Filipp Rondel, Akram Sadat Hosseini, Bikram Sahoo, Sergey Knyazev, Igor Mandric, Frank Stewart, Ion I. Mandoiu, Bogdan Pasaniuc, Alex Zelikovsky:
Estimating Enzyme Participation in Metabolic Pathways for Microbial Communities from RNA-seq Data. ISBRA 2020: 335-343 - [c8]Ruth Johnson, Kathryn S. Burch, Kangcheng Hou, Mario Paciuc, Bogdan Pasaniuc, Sriram Sankararaman:
A Scalable Method for Estimating the Regional Polygenicity of Complex Traits. RECOMB 2020: 253-254
2010 – 2019
- 2019
- [j20]Hanna Julienne, Huwenbo Shi, Bogdan Pasaniuc, Hugues Aschard:
RAISS: robust and accurate imputation from summary statistics. Bioinform. 35(22): 4837-4839 (2019) - [c7]Ali Pazokitoroudi, Yue Wu, Kathryn S. Burch, Kangcheng Hou, Bogdan Pasaniuc, Sriram Sankararaman:
Scalable Multi-component Linear Mixed Models with Application to SNP Heritability Estimation. RECOMB 2019: 312-313 - 2018
- [j19]Ruth Johnson, Huwenbo Shi, Bogdan Pasaniuc, Sriram Sankararaman:
A unifying framework for joint trait analysis under a non-infinitesimal model. Bioinform. 34(13): i195-i201 (2018) - [j18]Claudia Giambartolomei, Jimmy Zhenli Liu, Wen Zhang, Mads Hauberg, Huwenbo Shi, James Boocock, Joe Pickrell, Andrew E. Jaffe, The CommonMind Consortium, Bogdan Pasaniuc, Panos Roussos:
A Bayesian framework for multiple trait colocalization from summary association statistics. Bioinform. 34(15): 2538-2545 (2018) - 2017
- [j17]Gleb Kichaev, Megan Roytman, Ruth Johnson, Eleazar Eskin, Sara Lindström, Peter Kraft, Bogdan Pasaniuc:
Improved methods for multi-trait fine mapping of pleiotropic risk loci. Bioinform. 33(2): 248-255 (2017) - [j16]Robert Brown, Gleb Kichaev, Nicholas Mancuso, James Boocock, Bogdan Pasaniuc:
Enhanced methods to detect haplotypic effects on gene expression. Bioinform. 33(15): 2307-2313 (2017) - 2015
- [j15]Farhad Hormozdiari, Gleb Kichaev, Wen-Yun Yang, Bogdan Pasaniuc, Eleazar Eskin:
Identification of causal genes for complex traits. Bioinform. 31(12): 206-213 (2015) - [j14]Huwenbo Shi, Bogdan Pasaniuc, Kenneth L. Lange:
A multivariate Bernoulli model to predict DNaseI hypersensitivity status from haplotype data. Bioinform. 31(21): 3514-3521 (2015) - [j13]Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc:
A Spatial Haplotype Copying Model with Applications to Genotype Imputation. J. Comput. Biol. 22(5): 451-462 (2015) - 2014
- [j12]Bogdan Pasaniuc, Noah Zaitlen, Huwenbo Shi, Gaurav Bhatia, Alexander Gusev, Joseph Pickrell, Joel Hirschhorn, David P. Strachan, Nick Patterson, Alkes L. Price:
Fast and accurate imputation of summary statistics enhances evidence of functional enrichment. Bioinform. 30(20): 2906-2914 (2014) - [j11]Robert Brown, Bogdan Pasaniuc:
Enhanced Methods for Local Ancestry Assignment in Sequenced Admixed Individuals. PLoS Comput. Biol. 10(4) (2014) - [c6]Farhad Hormozdiari, Emrah Kostem, Eun Yong Kang, Bogdan Pasaniuc, Eleazar Eskin:
Identifying causal variants at loci with multiple signals of association. BCB 2014: 610-611 - [c5]Wen-Yun Yang, Farhad Hormozdiari, Eleazar Eskin, Bogdan Pasaniuc:
A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation. RECOMB 2014: 371-384 - 2013
- [j10]Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Noah Zaitlen, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Gary K. Chen, Loic Le Marchand, Brian E. Henderson, David Reich, Christopher A. Haiman, Esteban Gonzàlez Burchard, Eran Halperin:
Analysis of Latino populations from GALA and MEC studies reveals genomic loci with biased local ancestry estimation. Bioinform. 29(11): 1407-1415 (2013) - [j9]Wen-Yun Yang, Farhad Hormozdiari, Zhanyong Wang, Dan He, Bogdan Pasaniuc, Eleazar Eskin:
Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data. Bioinform. 29(18): 2245-2252 (2013) - 2012
- [j8]Yael Baran, Bogdan Pasaniuc, Sriram Sankararaman, Dara G. Torgerson, Christopher Gignoux, Celeste Eng, William Rodriguez-Cintron, Rocio Chapela, Jean G. Ford, Pedro C. Avila, Jose Rodriguez-Santana, Esteban Gonzàlez Burchard, Eran Halperin:
Fast and accurate inference of local ancestry in Latino populations. Bioinform. 28(10): 1359-1367 (2012) - [j7]Noah Zaitlen, Bogdan Pasaniuc, Nick Patterson, Samuela Pollack, Benjamin Voight, Leif Groop, David Altshuler, Brian E. Henderson, Laurence N. Kolonel, Loic Le Marchand, Kevin Waters, Christopher A. Haiman, Barbara E. Stranger, Emmanouil T. Dermitzakis, Peter Kraft, Alkes L. Price:
Analysis of case-control association studies with known risk variants. Bioinform. 28(13): 1729-1737 (2012) - 2011
- [j6]Dan He, Noah Zaitlen, Bogdan Pasaniuc, Eleazar Eskin, Eran Halperin:
Genotyping common and rare variation using overlapping pool sequencing. BMC Bioinform. 12(S-6): S2 (2011) - [j5]Bogdan Pasaniuc, Robert S. Garfinkel, Ion I. Mandoiu, Alexander Zelikovsky:
Optimal Testing of Digital Microfluidic Biochips. INFORMS J. Comput. 23(4): 518-529 (2011) - [j4]Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin:
Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. J. Comput. Biol. 18(3): 459-468 (2011) - 2010
- [c4]Bogdan Pasaniuc, Noah Zaitlen, Eran Halperin:
Accurate Estimation of Expression Levels of Homologous Genes in RNA-seq Experiments. RECOMB 2010: 397-409
2000 – 2009
- 2009
- [j3]Bogdan Pasaniuc, Sriram Sankararaman, Gad Kimmel, Eran Halperin:
Inference of locus-specific ancestry in closely related populations. Bioinform. 25(12) (2009) - [c3]Bogdan Pasaniuc, Justin Kennedy, Ion I. Mandoiu:
Imputation-Based Local Ancestry Inference in Admixed Populations. ISBRA 2009: 221-233 - [i1]Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc:
GEDI: Scalable Algorithms for Genotype Error Detection and Imputation. CoRR abs/0911.1765 (2009) - 2008
- [j2]Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc:
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity. J. Comput. Biol. 15(9): 1155-1171 (2008) - [j1]Alexander Gusev, Ion I. Mandoiu, Bogdan Pasaniuc:
Highly Scalable Genotype Phasing by Entropy Minimization. IEEE ACM Trans. Comput. Biol. Bioinform. 5(2): 252-261 (2008) - 2007
- [c2]Justin Kennedy, Ion I. Mandoiu, Bogdan Pasaniuc:
Genotype Error Detection Using Hidden Markov Models of Haplotype Diversity. WABI 2007: 73-84 - 2006
- [c1]Bogdan Pasaniuc, Ion I. Mandoiu:
Highly Scalable Genotype Phasing by Entropy Minimization. EMBC 2006: 3482-3486
Coauthor Index
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