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Semantic ScholarNucleic Acids Research, Volume 31
Volume 31, Number 1, January 2003
- Andreas D. Baxevanis:
The Molecular Biology Database Collection: 2003 update. 1-12 - Satoru Miyazaki, Hideaki Sugawara, Takashi Gojobori, Yoshio Tateno:
DNA Data Bank of Japan (DDBJ) in XML. 13-16 - Guenter Stoesser, Wendy Baker, Alexandra van den Broek, Maria Garcia-Pastor, Carola Kanz, Tamara Kulikova, Rasko Leinonen
, Quan Lin, Vincent Lombard, Rodrigo Lopez, Renato Mancuso, Francesco Nardone, Peter Stoehr, Mary Ann Tuli, Katerina Tzouvara, Robert Vaughan:
The EMBL Nucleotide Sequence Database: major new developments. 17-22 - Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, David L. Wheeler:
GenBank. 23-27 - David L. Wheeler, Deanna M. Church, Scott Federhen, Alex E. Lash, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Tatiana A. Tatusova, Lukas Wagner:
Database resources of the National Center for Biotechnology. 28-33 - Kim D. Pruitt, Tatiana A. Tatusova, Donna R. Maglott:
NCBI Reference Sequence Project: update and current status. 34-37 - Michele E. Clamp, T. Daniel Andrews, Daniel Barker, Paul Bevan, Graham Cameron, Yuan Chen, Laura Clarke, Tony Cox, James A. Cuff, Val Curwen, Thomas A. Down, Richard Durbin, Eduardo Eyras, James G. R. Gilbert, Martin Hammond, Tim J. P. Hubbard, Arek Kasprzyk, Damian Keefe, Heikki Lehväslaiho, Vivek Iyer, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Simon C. Potter, Alistair G. Rust, Esther Schmidt, Stephen M. J. Searle, Guy Slater, James A. Smith, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka, Abel Ureta-Vidal, Imre Vastrik, Ewan Birney:
Ensembl 2002: accommodating comparative genomics. 38-42 - Catherine Brooksbank, Evelyn Camon, Midori A. Harris, Michele Magrane, Maria Jesus Martin, Nicola J. Mulder, Claire O'Donovan, Helen E. Parkinson, Mary Ann Tuli, Rolf Apweiler, Ewan Birney, Alvis Brazma, Kim Henrick, Rodrigo Lopez, Guenter Stoesser, Peter Stoehr, Graham Cameron:
The European Bioinformatics Institute's data resources. 43-50 - Donna Karolchik, Robert Baertsch, Mark Diekhans, Terrence S. Furey, Angela S. Hinrichs, Y. T. Lu, Krishna M. Roskin, M. Schwartz, Charles W. Sugnet, Daryl J. Thomas, R. J. Weber, David Haussler, W. James Kent:
The UCSC Genome Browser Database. 51-54 - Christoph Dieterich, Haiyan Wang, Katja Rateitschak, Hannes Luz, Martin Vingron:
CORG: a database for COmparative Regulatory Genomics. 55-57 - Ikuo Uchiyama:
MBGD: microbial genome database for comparative analysis. 58-62 - Magalie Leveugle, Karine Prat, Nadine Perrier, Daniel Birnbaum, François Coulier:
ParaDB: a tool for paralogy mapping in vertebrate genomes. 63-67 - Alvis Brazma, Helen E. Parkinson, Ugis Sarkans, Mohammadreza Shojatalab, Jaak Vilo, Niran Abeygunawardena, Ele Holloway, Misha Kapushesky, Patrick Kemmeren, Gonzalo Garcia Lara, Ahmet Oezcimen, Philippe Rocca-Serra, Susanna-Assunta Sansone:
ArrayExpress - a public repository for microarray gene expression data at the EBI. 68-71 - Thorsten Henrich, Mirana Ramialison, Rebecca Quiring, Beate Wittbrodt, Makoto Furutani-Seiki, Joachim Wittbrodt, Hisato Kondoh:
MEPD: a Medaka gene expression pattern database. 72-74 - Céline Amoreira, Winfried Hindermann, Christoph Grunau:
An improved version of the DNA methylation database (MethDB). 75-77 - Kevin Roberg-Perez, Corey M. Carlson, David A. Largaespada:
MTID: a database of Sleeping Beauty transposon insertions in mice. 78-81 - Guoying Liu, Ann E. Loraine, Ron Shigeta, Melissa S. Cline, Jill Cheng, Venu Valmeekam, Shaw Sun, David Kulp, Michael A. Siani-Rose:
NetAffx: Affymetrix probesets and annotations. 82-86 - Pavel V. Baranov, Olga L. Gurvich, Andrew W. Hammer, Raymond F. Gesteland, John F. Atkins:
RECODE 2003. 87-89 - Iris Tzafrir, Allan Dickerman, Olga Brazhnik, Quoc Nguyen, John McElver, Catherine Frye, David Patton, David Meinke:
The Arabidopsis SeedGenes Project. 90-93 - Jeremy Gollub, Catherine A. Ball, Gail Binkley, Janos Demeter, David B. Finkelstein, Joan M. Hebert, Tina Hernandez-Boussard, Heng Jin, Miroslava Kaloper, John C. Matese, Mark Schroeder, Patrick O. Brown, David Botstein, Gavin Sherlock:
The Stanford Microarray Database: data access and quality assessment tools. 94-96 - Mathias Krull, Nico Voss, Claudia Choi, Susanne Pistor, Anatolij Potapov, Edgar Wingender:
TRANSPATH: An integrated database on signal transduction and a tool for array analysis. 97-100 - Christopher J. Lee, Levan Atanelov, Barmak Modrek, Yi Xing:
ASAP: the Alternative Splicing Annotation Project. 101-105 - Vattipally B. Sreenu, Vishwanath Alevoor, Javaregowda Nagaraju, Hampapathalu A. Nagarajaram:
MICdb: database of prokaryotic microsatellites. 106-108 - William C. Ray, Charles J. Daniels:
PACRAT: a database and analysis system for archaeal and bacterial intergenic sequence features. 109-113 - Ilham A. Shahmuradov, Alex J. Gammerman, John M. Hancock, Peter M. Bramley, Victor V. Solovyev:
PlantProm: a database of plant promoter sequences. 114-117 - Julia V. Ponomarenko, Tatyana I. Merkulova, Galina Orlova, Oleg N. Fokin, Elena Gorshkova, Anatoly S. Frolov, Vadim P. Valuev, Mikhail P. Ponomarenko:
rSNP_Guide, a database system for analysis of transcription factor binding to DNA with variations: application to genome annotation. 118-121 - Filip Pattyn, Frank Speleman, Anne De Paepe, Jo Vandesompele:
RTPrimerDB: the Real-Time PCR primer and probe database. 122-123 - Gudmundur A. Thorisson, Lincoln Stein:
The SNP Consortium website: past, present and future. 124-127 - Stephen Rudd, Hans-Werner Mewes, Klaus F. X. Mayer:
Sputnik: a database platform for comparative plant genomics. 128-132 - Todd W. Harris, Raymond Y. N. Lee, Erich M. Schwarz, Keith Bradnam, Daniel Lawson, Wen J. Chen, Darin Blasiar, Eimear Kenny, Fiona Cunningham, Ranjana Kishore, Juancarlos Chan, Hans-Michael Müller, Andrei Petcherski, Gudmundur A. Thorisson, Allen Day, Tamberlyn Bieri, Anthony Rogers, Chao-Kung Chen, John Spieth, Paul W. Sternberg, Richard Durbin, Lincoln D. Stein:
WormBase: a cross-species database for comparative genomics. 133-137 - Emmanuelle Karsenty, Emmanuel Barillot, Gwenola Tosser-Klopp, Yvette Lahbib-Mansais, Denis Milan, Francois Hatey, Susanna Cirera, Milena Sawera, Claus B. Jørgensen, Bhanu Chowdhary, Merete Fredholm, Klaus Wimmers, Siriluck Ponsuksili, Roberta Davoli, Luca Fontanesi, Silvia Braglia, Paolo Zambonelli, Daniele Bigi, Stefan Neuenschwander, Joël Gellin:
The GENETPIG database: a tool for comparative mapping in pig (Sus scrofa). 138-141 - Marilyn Safran, Vered Chalifa-Caspi, Orit Shmueli, Tsviya Olender, Michal Lapidot, Naomi Rosen, Michael Shmoish, Yakov Peter, Gustavo Glusman, Ester Feldmesser, Avital Adato, Inga Peter, Miriam Khen, Tal Atarot, Yoram Groner, Doron Lancet:
Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE. 142-146 - Jeremy D. Glasner, Paul Liss, Guy Plunkett III, Aaron E. Darling, Tejasvini Prasad, Michael Rusch, Alexis Byrnes, Michael K. Gilson, Bryan S. Biehl, Frederick R. Blattner, Nicole T. Perna:
ASAP, a systematic annotation package for community analysis of genomes. 147-151 - John W. Urbance, James R. Cole, Paul Saxman, James M. Tiedje:
BSD: the Biodegradative Strain Database. 152-155 - Mark L. Crowe, Carine Serizet, Vincent Thareau, Sébastien Aubourg, Pierre Rouzé, Pierre Hilson, Jim Beynon, Peter Weisbeek, Paul van Hummelen, Philippe Reymond, Javier Paz-Ares, Wilfried Nietfeld, Martin Trick:
CATMA: a complete Arabidopsis GST database. 156-158 - Joseph F. Ryan, John R. Finnerty:
CnidBase: The Cnidarian Evolutionary Genomics Database. 159-163 - Ross A. Overbeek, Niels Larsen, Theresa Walunas, Mark D'Souza, Gordon D. Pusch, Evgeni Selkov Jr., Konstantinos Liolios, Viktor Joukov, Denis Kaznadzey, Iain Anderson, Anamitra Bhattacharyya, Henry Burd, Warren Gardner, Paul Hanke, Vinayak Kapatral, Natalia Mikhailova, Olga Vassieva, Andrei Osterman, Veronika Vonstein, Michael Fonstein, Natalia Ivanova, Nikos Kyrpides:
The ERGOTM genome analysis and discovery system. 164-171 - Emmet A. O'Brien, Elarbi Badidi, Ania Barbasiewicz, Cristina deSousa, B. Franz Lang, Gertraud Burger:
GOBASE - a database of mitochondrial and chloroplast information. 176-178 - Delphine Samson, Fabrice Legeai, Emmanuelle Karsenty, Sébastien Reboux, Jean-Baptiste Veyrieras, Jeremy Just, Emmanuel Barillot:
GénoPlante-Info (GPI): a collection of databases and bioinformatics resources for plant genomics. 179-182 - David E. Matthews, Victoria L. Carollo, Gerard R. Lazo, Olin D. Anderson:
GrainGenes, the genome database for small-grain crops. 183-186 - Santiago Garcia-Vallvé, Eduard Guzmán, M. A. Montero, Antoni Romeu:
HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes. 187-189 - Wojciech M. Karlowski, Heiko Schoof, Vijayalakshmi Janakiraman, Volker Stümpflen, Klaus F. X. Mayer:
MOsDB: an integrated information resource for rice genomics. 190-192 - Judith A. Blake, Joel E. Richardson, Carol J. Bult, James A. Kadin, Janan T. Eppig:
MGD: the Mouse Genome Database. 193-195 - Anne-Françoise J. Lamblin, John A. Crow, James E. Johnson, Kevin A. T. Silverstein, Timothy M. Kunau, Alan Kilian, Diane Benz, Martina V. Stromvik, Gabriella Endré, Kathryn A. VandenBosch, Douglas R. Cook, Nevin D. Young, Ernest F. Retzel:
MtDB: a database for personalized data mining of the model legume Medicago truncatula transcriptome. 196-201 - Daniel Jameson, Andrew P. Gibson, Cendrine Hudelot, Paul G. Higgs:
OGRe: a relational database for comparative analysis of mitochondrial genomes. 202-206 - Dmitrij Frishman, Martin Mokrejs, Denis Kosykh, Gabi Kastenmüller, Grigory Kolesov, Igor Zubrzycki, Christian Gruber, Birgitta Geier, Andreas Kaps, Kaj Albermann, Andreas Volz, Christian Wagner, Matthias Fellenberg, Klaus Heumann, Hans-Werner Mewes:
The PEDANT genome database. 207-211 - Amit Bahl, Brian P. Brunk, Jonathan Crabtree, Martin J. Fraunholz, Bindu Gajria, Gregory R. Grant, Hagai Ginsburg, Dinesh Gupta, Jessica C. Kissinger, Philip Labo, Li Li, Matthew D. Mailman, Arthur J. Milgram, David S. Pearson, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr., Patricia L. Whetzel:
PlasmoDB: the Plasmodium genome resource. A database integrating experimental and computational data. 212-215 - Shuai Weng, Qing Dong, Rama Balakrishnan, Karen R. Christie, Maria C. Costanzo, Kara Dolinski, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Eurie L. Hong, Laurie Issel-Tarver, Anand Sethuraman, Chandra L. Theesfeld, Rey Andrada, Gail Binkley, Christopher Lane, Mark Schroeder, David Botstein, J. Michael Cherry:
Saccharomyces Genome Database (SGD) provides biochemical and structural information for budding yeast proteins. 216-218 - Maximilian Diehn, Gavin Sherlock, Gail Binkley, Heng Jin, John C. Matese, Tina Hernandez-Boussard, Christian A. Rees, J. Michael Cherry, David Botstein, Patrick O. Brown, Ash A. Alizadeh:
SOURCE: a unified genomic resource of functional annotations, ontologies, and gene expression data. 219-223 - Seung Yon Rhee, William D. Beavis, Tanya Z. Berardini, Guanghong Chen, David A. Dixon, Aisling Doyle, Margarita Garcia-Hernandez, Eva Huala, Gabriel Lander, Mary Montoya, Neil Miller, Lukas A. Mueller, Suparna Mundodi, Leonore Reiser, Julie Tacklind, Dan C. Weems, Yihe Wu, Iris Xu, Daniel Yoo, Jungwon Yoon, Peifen Zhang:
The Arabidopsis Information Resource (TAIR): a model organism database providing a centralized, curated gateway to Arabidopsis biology, research materials and community. 224-228 - Qiaoping Yuan, Shu Ouyang, Jia Liu, Bernard B. Suh, Foo Cheung, Razvan Sultana, Daniel Lee, John Quackenbush, C. Robin Buell:
The TIGR rice genome annotation resource: annotating the rice genome and creating resources for plant biologists. 229-233 - Jessica C. Kissinger, Bindu Gajria, Li Li, Ian T. Paulsen, David S. Roos:
ToxoDB: accessing the Toxoplasma gondii genome. 234-236 - Philippe Vaglio, Philippe Lamesch, Jérôme Reboul, Jean-François Rual, Monica Martinez, David E. Hill, Marc Vidal:
WorfDB: the Caenorhabditis elegans ORFeome Database. 237-240 - Judy Sprague, Dave Clements, Tom Conlin, Pat Edwards, Ken Frazer, Kevin Schaper, Erik Segerdell, Peiran Song, Brock Sprunger, Monte Westerfield:
The Zebrafish Information Network (ZFIN): the zebrafish model organism database. 241-243 - Qunfeng Dong, Laura Roy, Michael Freeling, Virginia Walbot, Volker Brendel:
ZmDB, an integrated database for maize genome research. 244-247 - Gary D. Bader, Doron Betel, Christopher W. V. Hogue:
BIND: the Biomolecular Interaction Network Database. 248-250 - See-Kiong Ng, Zhuo Zhang, Soon-Heng Tan, Kui Lin:
InterDom: a database of putative interacting protein domains for validating predicted protein interactions and complexes. 251-254 - Zhi Liang Ji, X. Chen, C. J. Zheng, L. X. Yao, L. Y. Han, Wee Kiang Yeo, P. C. Chung, H. S. Puy, Y. T. Tay, A. Muhammad, Yu Zong Chen:
KDBI: Kinetic Data of Bio-molecular Interactions database. 255-257 - Christian von Mering, Martijn A. Huynen, Daniel Jaeggi, Steffen Schmidt, Peer Bork, Berend Snel:
STRING: a database of predicted functional associations between proteins. 258-261 - Lynda B. M. Ellis, Bo Kyeng Hou, Wenjun Kang, Lawrence P. Wackett:
The University of Minnesota Biocatalysis/Biodegradation Database: post-genomic data mining. 262-265 - Richard Münch, Karsten Hiller, Heiko Barg, Dana Heldt, Simone Linz, Edgar Wingender, Dieter Jahn:
PRODORIC: prokaryotic database of gene regulation. 266-269 - Haseena Rajeevan, Michael V. Osier, Kei-Hoi Cheung, H. Deng, L. Druskin, R. Heinzen, Judith R. Kidd, S. Stein, Andrew J. Pakstis, Nick P. Tosches, C.-C. Yeh, Perry L. Miller, Kenneth K. Kidd:
ALFRED: the ALelle FREquency Database. Update. 270-271 - Jean-Loup Huret, Philippe Dessen, Alain Bernheim:
Atlas of Genetics and Cytogenetics in Oncology and Haematology, year 2003. 272-274 - Frank W. Nicholas:
Online Mendelian Inheritance in Animals (OMIA): a comparative knowledgebase of genetic disorders and other familial traits in non-laboratory animals. 275-277 - Doug Stryke, Michiko Kawamoto, Conrad C. Huang, Susan J. Johns, Leslie A. King, Courtney A. Harper, Elaine C. Meng, Roy E. Lee, Alice Yee, Larry L'Italien, Pao-Tien Chuang, Stephen G. Young, William C. Skarnes, Patricia C. Babbitt, Thomas E. Ferrin:
BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. 278-281 - Cyril Sarrauste de Menthière, Stéphane Terrière, Denis Pugnère, Manuel Ruiz, Jacques Demaille, Isabelle Touitou:
INFEVERS: the Registry for FMF and hereditary inflammatory disorders mutations. 282-285 - Denis Pugnère, Manuel Ruiz, Cyril Sarrauste de Menthière, Benjamin Masdoua, Jacques Demaille, Isabelle Touitou:
The MetaFMF website: a high quality tool for meta-analysis of FMF. 286-290 - Long-Cheng Li, Hong Zhao, Hiroaki Shiina, Christopher J. Kane, Rajvir Dahiya:
PGDB: a curated and integrated database of genes related to the prostate. 291-293 - Florence Horn, Emmanuel Bettler, Laerte Oliveira, Fabien Campagne, Fred E. Cohen, Gerrit Vriend:
GPCRDB information system for G protein-coupled receptors. 294-297 - Soo-Yon Rhee, Matthew J. Gonzales, Rami Kantor, Bradley J. Betts, Jaideep Ravela, Robert W. Shafer:
Human immunodeficiency virus reverse transcriptase and protease sequence database. 298-303 - Sharmila Banerjee-Basu, Travis Moreland, Benjamin J. Hsu, Kenneth L. Trout, Andreas D. Baxevanis:
The Homeodomain Resource: 2003 update. 304-306 - Marie-Paule Lefranc:
IMGT, the international ImMunoGeneTics database®. 307-310 - James Robinson, Matthew J. Waller, Peter Parham, Natasja de Groot, Ronald Bontrop, Lorna J. Kennedy, Peter Stoehr, Steven G. E. Marsh:
IMGT/HLA and IMGT/MHC: sequence databases for the study of the major histocompatibility complex. 311-314 - Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov:
The InterPro Database, 2003 brings increased coverage and new features. 315-318 - Markus Fischer, Jürgen Pleiss:
The Lipase Engineering Database: a navigation and analysis tool for protein families. 319-321 - Marco Sardiello, Flavio Licciulli, Domenico Catalano, Marcella Attimonelli, Corrado Caggese:
MitoDrome: a database of Drosophila melanogaster nuclear genes encoding proteins targeted to the mitochondrion. 322-324 - Ryan Lister, Monika W. Murcha, James Whelan:
The Mitochondrial Protein Import Machinery of Plants (MPIMP) database. 325-327 - Graham Dellaire, R. Farrall, W. A. Bickmore:
The Nuclear Protein Database (NPD): sub-nuclear localisation and functional annotation of the nuclear proteome. 328-330 - Joost J. J. van Durme, Emmanuel Bettler, Simon Folkertsma, Florence Horn, Gert Vriend:
NRMD: Nuclear Receptor Mutation Database. 331-333 - Paul D. Thomas, Anish Kejariwal, Michael J. Campbell, Huaiyu Mi, Karen Diemer, Nan Guo, Istvan Ladunga, Betty Lazareva-Ulitsky, Anushya Muruganujan, Steven Rabkin, Jody A. Vandergriff, Olivier Doremieux:
PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification. 334-341 - Jason H. Tchieu, Fariba Fana, J. Lynn Fink, Jeffrey Harper, T. Murlidharan Nair, R. Hannes Niedner, Douglas W. Smith, Kenneth Steube, Tobey M. Tam, Stella Veretnik, Degeng Wang, Michael Gribskov:
The PlantsP and PlantsT Functional Genomics Databases. 342-344 - Cathy H. Wu, Lai-Su L. Yeh, Hongzhan Huang, Leslie Arminski, Jorge Castro-Alvear, Yongxing Chen, Zhang-Zhi Hu, Panagiotis Kourtesis, Robert S. Ledley, Baris E. Suzek, Cholanayakanahalli R. Vinayaka, Jian Zhang, Winona C. Barker:
The Protein Information Resource. 345-347 - Ori Sasson, Avishay Vaaknin, Hillel Fleischer, Elon Portugaly, Yonatan Bilu, Nathan Linial, Michal Linial:
ProtoNet: hierarchical classification of the protein space. 348-352 - Julien Grassot, Guy Mouchiroud, Guy Perrière:
RTKdb: database of receptor tyrosine kinase. 353-358 - Ovidiu Ivanciuc, Catherine H. Schein, Werner Braun:
SDAP: database and computational tools for allergenic proteins. 359-362 - Magnus Alm Rosenblad, Jan Gorodkin, Bjarne Knudsen, Christian Zwieb, Tore Samuelsson:
SRPDB: Signal Recognition Particle Database. 363-364 - Brigitte Boeckmann, Amos Bairoch, Rolf Apweiler, Marie-Claude Blatter, Anne Estreicher, Elisabeth Gasteiger, Maria Jesus Martin, Karine Michoud, Claire O'Donovan, Isabelle Phan, Sandrine Pilbout, Michel Schneider:
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. 365-370 - Daniel H. Haft, Jeremy D. Selengut, Owen White:
The TIGRFAMs database of protein families. 371-373 - V. Matys, Ellen Fricke, R. Geffers, Ellen Gößling, Martin Haubrock, Reinhard Hehl, Klaus Hornischer, Dagmar Karas, Alexander E. Kel, Olga V. Kel-Margoulis, Dorothee-U. Kloos, Sigrid Land, Birgit Lewicki-Potapov, Holger Michael, Richard Münch, Ingmar Reuter, Stella Rotert, H. Saxel, Maurice Scheer, S. Thiele, Edgar Wingender:
TRANSFAC®: transcriptional regulation, from patterns to profiles. 374-378 - Angelo M. Facchiano, Antonio Facchiano, Francesco Facchiano:
Active Sequences Collection (ASC) database: a new tool to assign functions to protein sequences. 379-382 - Aron Marchler-Bauer, John B. Anderson, Carol DeWeese-Scott, Natalie D. Fedorova, Lewis Y. Geer, Siqian He, David I. Hurwitz, John D. Jackson, Aviva R. Jacobs, Christopher J. Lanczycki, Cynthia A. Liebert, Chunlei Liu, Thomas Madej, Gabriele H. Marchler, Raja Mazumder, Anastasia N. Nikolskaya, Anna R. Panchenko, Bachoti S. Rao, Benjamin A. Shoemaker, Vahan Simonyan, James S. Song, Paul A. Thiessen, Sona Vasudevan, Yanli Wang, Roxanne A. Yamashita, Jodie J. Yin, Stephen H. Bryant:
CDD: a curated Entrez database of conserved domain alignments. 383-387 - Evgenia V. Kriventseva, Florence Servant, Rolf Apweiler:
Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters. 388-389 - Hongzhan Huang, Winona C. Barker, Yongxing Chen, Cathy H. Wu:
iProClass: an integrated database of protein family, function and structure information. 390-392 - Tanja la Cour, Ramneek Gupta, Kristoffer Rapacki, Karen Skriver, Flemming M. Poulsen, Søren Brunak:
NESbase version 1.0: a database of nuclear export signals. 393-396 - Rajesh Nair, Phil Carter, Burkhard Rost:
NLSdb: database of nuclear localization signals. 397-399 - Terri K. Attwood, Paul Bradley, Darren R. Flower, Anna Gaulton, Neil Maudling, Alex L. Mitchell, G. Moulton, A. Nordle, K. Paine, P. Taylor, A. Uddin, Christianna Zygouri:
PRINTS and its automatic supplement, prePRINTS. 400-402 - Kristian Vlahovicek, László Kaján, János Murvai, Zoltán Hegeds, Sándor Pongor:
The SBASE domain sequence library, release 10: domain architecture prediction. 403-405 - Masami Ikeda, Masafumi Arai, Toshikatsu Okuno, Toshio Shimizu:
TMPDB: a database of experimentally-characterized transmembrane topologies. 406-409 - Phil Carter, Jinfeng Liu, Burkhard Rost:
PEP: Predictions for Entire Proteomes. 410-413 - Manuela Pruess, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Florence Servant, Rolf Apweiler:
The Proteome Analysis database: a tool for the in silico analysis of whole proteomes. 414-417 - Richard J. Roberts, Tamas Vincze, Janos Posfai, Dana Macelis:
REBASE: restriction enzymes and methyltransferases. 418-420 - Tala Bakheet, Bryan R. G. Williams, Khalid S. A. Khabar:
ARED 2.0: an update of AU-rich element mRNA database. 421-423 - Lixin Dai, Navtej Toor, Robert Olson, Andrew Keeping, Steven Zimmerly:
Database for mobile group II introns. 424-426 - Sophie Bonnal, Christel Boutonnet, Leonel Prado-Lourenço, Stéphan Vagner:
IRESdb: the Internal Ribosome Entry Site database. 427-428 - Maciej Szymanski, Volker A. Erdmann, Jan Barciszewski:
Noncoding regulatory RNAs database. 429-431 - John W. S. Brown, Manuel Echeverria, Liang-Hu Qu, Todd M. Lowe, Jean-Pierre Bachellerie, Alexander Hüttenhofer, James P. Kastenmayer, Pamela J. Green, Paul D. Shaw, David F. Marshall:
Plant snoRNA database. 432-435 - Guglielmo Rainaldi, Mariateresa Volpicella, Flavio Licciulli, Sabino Liuni, Raffaele Gallerani, Luigi R. Ceci:
PLMItRNA, a database on the heterogeneous genetic origin of mitochondrial tRNA genes and tRNAs in photosynthetic eukaryotes. 436-438 - Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R. Eddy:
Rfam: an RNA family database. 439-441 - James R. Cole, Benli Chai, Terry L. Marsh, Ryan J. Farris, Qiong Wang, S. A. Kulam, S. Chandra, Donna M. McGarrell, Thomas M. Schmidt, George M. Garrity, James M. Tiedje:
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. 442-443 - Martin Pelchat, Lynda Rocheleau, Jonathan Perreault, Jean-Pierre Perreault:
SubViral RNA: a database of the smallest known auto-replicable RNA species. 444-445