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Michael Gribskov
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2020 – today
- 2022
- [j36]Liheng Luo, Michael Gribskov, Sufang Wang
:
Bibliometric review of ATAC-Seq and its application in gene expression. Briefings Bioinform. 23(3) (2022) - 2020
- [j35]Xiangying Sun, Zhezhen Wang
, Johnathon M. Hall
, Carlos Perez-Cervantes
, Alexander J. Ruthenburg
, Ivan P. Moskowitz
, Michael Gribskov
, Xinan Holly Yang
:
Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq. PLoS Comput. Biol. 16(2) (2020)
2010 – 2019
- 2019
- [j34]Junhui Wang, Michael Gribskov
:
IRESpy: an XGBoost model for prediction of internal ribosome entry sites. BMC Bioinform. 20(1): 409:1-409:15 (2019) - [j33]Mengmeng Zhu, Michael Gribskov
:
MiPepid: MicroPeptide identification tool using machine learning. BMC Bioinform. 20(1): 559:1-559:11 (2019) - [e4]Shoba Ranganathan, Michael Gribskov, Kenta Nakai, Christian Schönbach:
Encyclopedia of Bioinformatics and Computational Biology - Volume 1. Elsevier 2019, ISBN 978-0-12-811432-2 [contents] - [e3]Shoba Ranganathan, Michael Gribskov, Kenta Nakai, Christian Schönbach:
Encyclopedia of Bioinformatics and Computational Biology - Volume 2. Elsevier 2019, ISBN 978-0-12-811432-2 [contents] - [e2]Shoba Ranganathan, Michael Gribskov, Kenta Nakai, Christian Schönbach:
Encyclopedia of Bioinformatics and Computational Biology - Volume 3. Elsevier 2019, ISBN 978-0-12-811432-2 [contents] - [r2]Xiangying Sun, Michael Gribskov
:
MicroRNA and lncRNA Databases and Analysis. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 165-170 - [r1]Michael Gribskov
:
Identification of Sequence Patterns, Motifs and Domains. Encyclopedia of Bioinformatics and Computational Biology (3) 2019: 332-340 - 2018
- [j32]Khaleel Mershad
, Qutaibah M. Malluhi, Mourad Ouzzani, MingJie Tang, Michael Gribskov
, Walid G. Aref
:
AUDIT: approving and tracking updates with dependencies in collaborative databases. Distributed Parallel Databases 36(1): 81-119 (2018) - [j31]Khaleel Mershad
, Qutaibah M. Malluhi, Mourad Ouzzani, MingJie Tang, Michael Gribskov
, Walid G. Aref
, Deo Prakash
:
COACT: a query interface language for collaborative databases. Distributed Parallel Databases 36(1): 121-151 (2018) - 2017
- [j30]Sufang Wang, Michael Gribskov
:
Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis. Bioinform. 33(3): 327-333 (2017) - [j29]Biaobin Jiang, Kyle Kloster, David F. Gleich
, Michael Gribskov
:
AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs. Bioinform. 33(12): 1829-1836 (2017) - [j28]Hao Peng, Yifan Yang, Shandian Zhe, Jian Wang, Michael Gribskov
, Yuan Qi:
DEIsoM: a hierarchical Bayesian model for identifying differentially expressed isoforms using biological replicates. Bioinform. 33(19): 3018-3027 (2017) - [c7]Gladys K. Andino, Marisa Brazil
, Michael Gribskov
, Preston M. Smith
:
Advancing the Representation of Women in HPC at Purdue University. PEARC 2017: 56:1-56:3 - 2016
- [j27]Sufang Wang, Michael Gribskov
, Tony R. Hazbun
, Pete E. Pascuzzi
:
CellMiner Companion: an interactive web application to explore CellMiner NCI-60 data. Bioinform. 32(15): 2399-2401 (2016) - [i1]Biaobin Jiang, Kyle Kloster, David F. Gleich, Michael Gribskov:
AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs. CoRR abs/1601.05506 (2016) - 2015
- [j26]Yuta Otsuka, Ai Muto, Rikiya Takeuchi
, Chihiro Okada, Motokazu Ishikawa, Koichiro Nakamura, Natsuko Yamamoto, Hitomi Dose, Kenji Nakahigashi, Shigeki Tanishima, Sivasundaram Suharnan, Wataru Nomura, Toru Nakayashiki, Walid G. Aref, Barry R. Bochner, Tyrrell Conway, Michael Gribskov
, Daisuke Kihara, Kenneth E. Rudd, Yukako Tohsato, Barry L. Wanner, Hirotada Mori:
GenoBase: comprehensive resource database of Escherichia coli K-12. Nucleic Acids Res. 43(Database-Issue): 606-617 (2015) - [c6]Gladys K. Andino, Michael Gribskov
, Greg J. Hunt, Denis Anderson, Jay D. Evans
:
Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera). BIBM 2015: 1715-1716 - [c5]Muyi Liu, Michael Gribskov
:
MMC-margin: Identification of maximum frequent subgraphs by metropolis Monte Carlo sampling. IEEE BigData 2015: 849-856 - [c4]Biaobin Jiang, David F. Gleich, Michael Gribskov
:
Differential flux balance analysis of quantitative proteomic data on protein interaction networks. GlobalSIP 2015: 977-981
2000 – 2009
- 2008
- [j25]Shoba Ranganathan
, Michael Gribskov
, Tin Wee Tan:
Bioinformatics research in the Asia Pacific: a 2007 update. BMC Bioinform. 9(S-1) (2008) - [c3]Kejie Li, Reazur Rahman, Aditi Gupta, Prasad Siddavatam, Michael Gribskov
:
Pattern Matching in RNA Structures. ISBRA 2008: 317-330 - 2006
- [j24]Shoba Ranganathan
, Martti Tammi, Michael Gribskov
, Tin Wee Tan:
Establishing bioinformatics research in the Asia Pacific. BMC Bioinform. 7(S-5) (2006) - [j23]Jenny Gu, Michael Gribskov
, Philip E. Bourne:
Wiggle - Predicting Functionally Flexible Regions from Primary Sequence. PLoS Comput. Biol. 2(7) (2006) - 2005
- [j22]Michael Gribskov
:
An Open Forum for Computational Biology. PLoS Comput. Biol. 1(1) (2005) - [j21]Michael Gribskov
:
The ISCB: Growing and Evolving in Step with Science. PLoS Comput. Biol. 1(5) (2005) - 2004
- [c2]Christina L. Zheng, T. Murlidharan Nair, Michael Gribskov, Y. S. Kwon, Hai-Ri Li, Xiang-Dong Fu:
A Database Designed to Computationally Aid an Experimental Approach to Alternative Splicing. Pacific Symposium on Biocomputing 2004: 78-88 - 2003
- [j20]J. Lynn Fink
, Scott Drewes, Hiren Patel, John B. Welsh, Daniel R. Masys, Jacques Corbeil
, Michael Gribskov
:
2HAPI: A Microarray Data Analysis System. Bioinform. 19(11): 1443-1445 (2003) - [j19]Christina L. Zheng, Fariba Fana, Poornaprajna V. Udupi, Michael Gribskov
:
a program for automatic generation of database interfaces . Comput. Biol. Chem. 27(2): 135-139 (2003) - [j18]T. Murlidharan Nair
, Christina L. Zheng, J. Lynn Fink
, Robert O. Stuart, Michael Gribskov
:
Rival penalized competitive learning (RPCL): a topology-determining algorithm for analyzing gene expression data. Comput. Biol. Chem. 27(6): 565-574 (2003) - [j17]Timothy L. Bailey, Michael Gribskov
:
Estimating and Evaluating the Statistics of Gapped Local-Alignment Scores. J. Comput. Biol. 9(3): 575-593 (2003) - [j16]Jason H. Tchieu
, Fariba Fana, J. Lynn Fink, Jeffrey Harper, T. Murlidharan Nair
, R. Hannes Niedner, Douglas W. Smith, Kenneth Steube, Tobey M. Tam, Stella Veretnik, Degeng Wang, Michael Gribskov
:
The PlantsP and PlantsT Functional Genomics Databases. Nucleic Acids Res. 31(1): 342-344 (2003) - [j15]Michael Gribskov
:
Challenges in Data Management for Functional Genomics. OMICS 7(1): 3-6 (2003) - 2002
- [j14]Samson Chien, Lawrence T. Reiter, Ethan Bier, Michael Gribskov:
Homophila: human disease gene cognates in Drosophila. Nucleic Acids Res. 30(1): 149-151 (2002) - 2001
- [j13]Daniel R. Masys, John B. Welsh, J. Lynn Fink, Michael Gribskov, Igor Klacansky, Jacques Corbeil
:
Use of keyword hierarchies to interpret gene expression patterns. Bioinform. 17(4): 319-326 (2001) - [j12]Michael Gribskov
, Fariba Fana, Jeffrey Harper, Debra A. Hope, Alice C. Harmon, Douglas W. Smith, Frans E. Tax
, Guangfa Zhang:
PlantsP: a functional genomics database for plant phosphorylation. Nucleic Acids Res. 29(1): 111-113 (2001) - 2000
- [j11]Timothy L. Bailey, Michael Gribskov:
Concerning the accuracy of MAST E-values. Bioinform. 16(5): 488-489 (2000) - [j10]Philip E. Bourne, Michael Gribskov:
ISMB-2000: Bioinformatics enters a new millennium. Bioinform. 16(9): 749 (2000) - [e1]Philip E. Bourne, Michael Gribskov, Russ B. Altman, Nancy Jensen, Debra A. Hope, Thomas Lengauer, Julie C. Mitchell, Eric D. Scheeff, Chris Smith, Shawn Strande, Helge Weissig:
Proceedings of the Eighth International Conference on Intelligent Systems for Molecular Biology, August 19-23, 2000, La Jolla / San Diego, CA, USA. AAAI 2000, ISBN 1-57735-115-0 [contents]
1990 – 1999
- 1998
- [j9]Timothy L. Bailey, Michael Gribskov:
Combining evidence using p-values: application to sequence homology searches. Bioinform. 14(1): 48-54 (1998) - [j8]Timothy L. Bailey, Michael Gribskov:
Methods and Statistics for Combining Motif Match Scores. J. Comput. Biol. 5(2): 211-221 (1998) - 1997
- [j7]Timothy L. Bailey, Michael Gribskov
:
Score Distributions for Simultaneous Matching to Multiple Motifs. J. Comput. Biol. 4(1): 45-59 (1997) - 1996
- [j6]Michael Gribskov, Nina L. Robinson:
Use of Receiver Operating Characteristic (ROC) Analysis to Evaluate Sequence Matching. Comput. Chem. 20(1): 25-33 (1996) - [c1]Timothy L. Bailey, Michael Gribskov:
The Megaprior Heuristic for Discovering Protein Sequence Patterns. ISMB 1996: 15-24 - 1993
- [j5]Michael Gribskov:
A Mechanistic View of Proteins and Their Sequences. Comput. Chem. 17(2): 113-116 (1993) - 1992
- [j4]Michael Gribskov
:
The Language Metaphor in Sequence Analysis. Comput. Chem. 16(2): 85-88 (1992)
1980 – 1989
- 1988
- [j3]Michael Gribskov, M. Homyak, J. Edenfield, David S. Eisenberg:
Profile scanning for three-dimensional structural patterns in protein sequences. Comput. Appl. Biosci. 4(1): 61-66 (1988) - 1986
- [j2]Michael Gribskov
, Richard R. Burgess
, J. Devereux:
PEPPLOT, a protein secondary structure analysis program for the UWGCG sequence analysis software package. Nucleic Acids Res. 14(1): 327-334 (1986) - 1984
- [j1]Michael Gribskov
, J. Devereux, Richard R. Burgess
:
The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression. Nucleic Acids Res. 12(1): 539-549 (1984)
Coauthor Index
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