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M. S. Madhusudhan 0001
Person information
- affiliation: Indian Institute of Science Education and Research, Biology Wing, Pune, India
- affiliation (former): National University of Singapore, Department of Biological Sciences, Singapore
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2020 – today
- 2022
- [j21]Mihaly Varadi
, Stephen Anyango
, David R. Armstrong
, John M. Berrisford, Preeti Choudhary
, Mandar S. Deshpande
, Nurul Nadzirin, Sreenath Nair
, Lukás Pravda, Ahsan Tanweer
, Bissan Al-Lazikani
, Claudia Andreini
, Geoffrey J. Barton, David Bednar, Karel Berka
, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský
, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali
, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec
, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías
, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra
, Gerardo Pepe
, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy
, Atilio O. Rausch
, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato
, Pawel Rubach
, Luis Serrano, Gulzar Singh, Petr Skoda
, Carlos Oscar Sánchez Sorzano
, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton
, Michael J. E. Sternberg
, Christine A. Orengo, Sameer Velankar
:
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022) - 2020
- [j20]Abhilesh S. Dhawanjewar
, Ankit A. Roy
, Mallur S. Madhusudhan:
A knowledge-based scoring function to assess quaternary associations of proteins. Bioinform. 36(12): 3739-3748 (2020) - [j19]Mihaly Varadi
, John M. Berrisford, Mandar S. Deshpande
, Sreenath Nair
, Aleksandras Gutmanas
, David R. Armstrong
, Lukás Pravda
, Bissan Al-Lazikani
, Stephen Anyango
, Geoffrey J. Barton, Karel Berka
, Tom L. Blundell, Neera Borkakoti
, Jose M. Dana, Sayoni Das, Sucharita Dey, Patrizio Di Micco, Franca Fraternali
, Toby J. Gibson
, Manuela Helmer-Citterich, David Hoksza, Liang-Chin Huang, Rishabh Jain, Harry Jubb, Christos C. Kannas
, Natarajan Kannan, Jaroslav Koca, Radoslav Krivák, Manjeet Kumar
, Emmanuel D. Levy, Fábio Madeira
, M. S. Madhusudhan, Henry J. Martell
, Stuart A. MacGowan
, Jake E. McGreig
, Saqib Mir, Abhik Mukhopadhyay, Luca Parca
, Typhaine Paysan-Lafosse
, Leandro G. Radusky, António J. M. Ribeiro
, Luis Serrano, Ian Sillitoe, Gulzar Singh, Petr Skoda
, Radka Svobodová Vareková
, Jonathan D. Tyzack
, Alfonso Valencia, Eloy D. Villasclaras-Fernández, Wim F. Vranken, Mark N. Wass, Janet M. Thornton
, Michael J. E. Sternberg
, Christine A. Orengo, Sameer Velankar
:
PDBe-KB: a community-driven resource for structural and functional annotations. Nucleic Acids Res. 48(Database-Issue): D344-D353 (2020)
2010 – 2019
- 2019
- [j18]Sanchita Banerjee, Ankit Roy, M. S. Madhusudhan, Hridoy R. Bairagya, Amit Roy:
Structural insights of a cellobiose dehydrogenase enzyme from the basidiomycetes fungus Termitomyces clypeatus. Comput. Biol. Chem. 82: 65-73 (2019) - [j17]Minh N. Nguyen
, Neeladri Sen
, Meiyin Lin
, Thomas Leonard Joseph, Candida Vaz, Vivek Tanavde
, Luke Way, Ted R. Hupp
, Chandra S. Verma
, M. S. Madhusudhan
:
Discovering Putative Protein Targets of Small Molecules: A Study of the p53 Activator Nutlin. J. Chem. Inf. Model. 59(4): 1529-1546 (2019) - [j16]Ankit A. Roy
, Abhilesh S. Dhawanjewar
, Parichit Sharma
, Gulzar Singh, M. S. Madhusudhan:
Protein Interaction Z Score Assessment (PIZSA): an empirical scoring scheme for evaluation of protein-protein interactions. Nucleic Acids Res. 47(Webserver-Issue): W331-W337 (2019) - 2014
- [j15]Kuan Pern Tan, Shruti Khare, Raghavan Varadarajan, Mallur Srivatsan Madhusudhan:
TSpred: a web server for the rational design of temperature-sensitive mutants. Nucleic Acids Res. 42(Webserver-Issue): 277-284 (2014) - [j14]Kinya Hotta, Soumya Ranganathan, Ruchuan Liu, Fei Wu, Hiroaki Machiyama
, Rong Gao, Hiroaki Hirata
, Neelesh Soni
, Takashi Ohe, Christopher W. V. Hogue
, M. S. Madhusudhan, Yasuhiro Sawada
:
Biophysical Properties of Intrinsically Disordered p130Cas Substrate Domain - Implication in Mechanosensing. PLoS Comput. Biol. 10(4) (2014) - 2013
- [j13]Kuan Pern Tan, Thanh Binh Nguyen
, Siddharth Patel, Raghavan Varadarajan, Mallur S. Madhusudhan:
Depth: a web server to compute depth, cavity sizes, detect potential small-molecule ligand-binding cavities and predict the pKa of ionizable residues in proteins. Nucleic Acids Res. 41(Webserver-Issue): 314-321 (2013) - 2012
- [j12]Hannes Braberg, Benjamin M. Webb, Elina Tjioe, Ursula Pieper
, Andrej Sali, Mallur S. Madhusudhan:
SALIGN: a web server for alignment of multiple protein sequences and structures. Bioinform. 28(15): 2072-2073 (2012) - 2011
- [j11]Tim Knehans, Andreas Schüller
, Danny N. Doan, Kassoum Nacro, Jeffrey Hill, Peter Güntert
, M. S. Madhusudhan, Tanja Weil, Subhash G. Vasudevan
:
Structure-guided fragment-based in silico drug design of dengue protease inhibitors. J. Comput. Aided Mol. Des. 25(3): 263-274 (2011) - [j10]Ursula Pieper
, Benjamin M. Webb, David T. Barkan, Dina Schneidman-Duhovny, Avner Schlessinger, Hannes Braberg, Zheng Yang, Elaine C. Meng, Eric F. Pettersen, Conrad C. Huang, Ruchira S. Datta
, Parthasarathy Sampathkumar, Mallur S. Madhusudhan, Kimmen Sjölander, Thomas E. Ferrin, Stephen K. Burley
, Andrej Sali:
ModBase, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res. 39(Database-Issue): 465-474 (2011) - [j9]M. N. Nguyen, Kuan Pern Tan, Mallur S. Madhusudhan:
CLICK - topology-independent comparison of biomolecular 3D structures. Nucleic Acids Res. 39(Web-Server-Issue): 24-28 (2011) - [j8]Kuan Pern Tan, Raghavan Varadarajan, Mallur S. Madhusudhan:
DEPTH: a web server to compute depth and predict small-molecule binding cavities in proteins. Nucleic Acids Res. 39(Web-Server-Issue): 242-248 (2011)
2000 – 2009
- 2007
- [j7]Marc A. Martí-Renom
, Ursula Pieper
, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo
, Andrej Sali:
DBAli tools: mining the protein structure space. Nucleic Acids Res. 35(Web-Server-Issue): 393-397 (2007) - [j6]Kanika Bajaj
, Mallur S. Madhusudhan, Bharat V. Adkar
, Purbani Chakrabarti, C. Ramakrishnan, Andrej Sali, Raghavan Varadarajan:
Stereochemical Criteria for Prediction of the Effects of Proline Mutations on Protein Stability. PLoS Comput. Biol. 3(12) (2007) - 2006
- [j5]Ursula Pieper
, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom
, Rachel Karchin
, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali:
MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 34(Database-Issue): 291-295 (2006) - 2004
- [j4]Ursula Pieper
, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom
, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali:
MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res. 32(Database-Issue): 217-222 (2004) - 2003
- [j3]Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom
, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña
, Florencio Pazos
, Alfonso Valencia, Andrej Sali, Burkhard Rost
:
EVA: evaluation of protein structure prediction servers. Nucleic Acids Res. 31(13): 3311-3315 (2003) - [j2]Narayanan Eswar, Bino John, Nebojsa Mirkovic, András Fiser, Valentin A. Ilyin, Ursula Pieper
, Ashley C. Stuart, Marc A. Martí-Renom
, Mallur S. Madhusudhan, Bozidar Yerkovich, Andrej Sali:
Tools for comparative protein structure modeling and analysis. Nucleic Acids Res. 31(13): 3375-3380 (2003) - 2001
- [j1]Volker A. Eyrich, Marc A. Martí-Renom
, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos
, Alfonso Valencia, Andrej Sali, Burkhard Rost
:
EVA: continuous automatic evaluation of protein structure prediction servers. Bioinform. 17(12): 1242-1243 (2001)
Coauthor Index
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last updated on 2024-05-08 21:54 CEST by the dblp team
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