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Narayanaswamy Srinivasan
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2020 – today
- 2022
- [j33]Neha V. Kalmankar
, Murugavel Pavalam, Sowmya Indrakumar, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
:
DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins. Database J. Biol. Databases Curation 2022(2022) (2022) - [j32]Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly
, Joseph Rebehmed
, Alexandre G. de Brevern
:
Shaking the β-Bulges. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 14-18 (2022)
2010 – 2019
- 2019
- [j31]Guilhem Faure, Agnel Praveen Joseph, Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly
, Joseph Rebehmed
, Alexandre G. de Brevern
:
iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach. Source Code Biol. Medicine 14(1) (2019) - 2018
- [j30]Raju Kalaivani, Raju Reema, Narayanaswamy Srinivasan
:
Recognition of sites of functional specialisation in all known eukaryotic protein kinase families. PLoS Comput. Biol. 14(2) (2018) - [j29]Sneha Vishwanath
, Alexandre G. de Brevern
, Narayanaswamy Srinivasan
:
Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains. PLoS Comput. Biol. 14(2) (2018) - 2015
- [j28]Patricia C. Babbitt, Pantelis G. Bagos
, Amos Bairoch
, Alex Bateman, Arnaud Chatonnet
, Mark Jinan Chen
, David J. Craik
, Robert D. Finn, David E. Gloriam
, Daniel H. Haft, Bernard Henrissat
, Gemma L. Holliday
, Vignir Ísberg
, Quentin Kaas
, David Landsman
, Nicolas Lenfant
, Gerard Manning
, Nozomi Nagano
, Narayanaswamy Srinivasan, Claire O'Donovan
, Kim D. Pruitt
, Ramanathan Sowdhamini, Neil D. Rawlings
, Milton H. Saier Jr.
, Joanna L. Sharman
, Michael Spedding
, Konstantinos D. Tsirigos
, Åke Västermark, Gerrit Vriend:
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database J. Biol. Databases Curation 2015 (2015) - [j27]Rahul Metri, Sridhar Hariharaputran
, Gayatri Ramakrishnan
, Praveen Anand, Upadhyayula S. Raghavender, Bernardo Ochoa-Montaño, Alicia P. Higueruelo
, Ramanathan Sowdhamini, Nagasuma R. Chandra
, Tom L. Blundell, Narayanaswamy Srinivasan:
SInCRe - structural interactome computational resource for Mycobacterium tuberculosis. Database J. Biol. Databases Curation 2015 (2015) - [j26]Richa Mudgal, Sankaran Sandhya
, Gayatri Kumar, Ramanathan Sowdhamini, Nagasuma R. Chandra
, Narayanaswamy Srinivasan:
NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection. Nucleic Acids Res. 43(Database-Issue): 300-305 (2015) - 2014
- [j25]Mutharasu Gnanavel, Prachi Mehrotra
, Ramaswamy Rakshambikai, Juliette Martin
, Narayanaswamy Srinivasan, Ramachandra M. Bhaskara
:
CLAP: A web-server for automatic classification of proteins with special reference to multi-domain proteins. BMC Bioinform. 15: 343 (2014) - [j24]R. Rakshambikai, Narayanaswamy Srinivasan, Rupali A. Gadkari:
Repertoire of protein kinases Encoded in the genome of zebrafish shows remarkably Large Population of PIM kinases. J. Bioinform. Comput. Biol. 12(1) (2014) - 2013
- [j23]Swapnil Mahajan
, Garima Agarwal, Mohammed Iftekhar, Bernard O. Offmann
, Alexandre G. de Brevern
, Narayanaswamy Srinivasan:
DoSA: Database of Structural Alignments. Database J. Biol. Databases Curation 2013 (2013) - 2011
- [j22]Oruganty Krishnadev
, Narayanaswamy Srinivasan:
AlignHUSH : Alignment of HMMs Using Structure and Hydrophobicity information. BMC Bioinform. 12: 275 (2011) - [j21]Narayanaswamy Srinivasan, Garima Agarwal, Ramachandra M. Bhaskara
, Rupali A. Gadkari, Oruganty Krishnadev, B. Lakshmi, Swapnil Mahajan
, Smita Mohanty, Richa Mudgal, R. Rakshambikai, Sankaran Sandhya, G. Sudha, L. S. Swapna, N. Tyagi:
Influence of Genomic and Other Biological Data Sets in the Understanding of Protein Structures, Functions and Interactions. Int. J. Knowl. Discov. Bioinform. 2(1): 24-44 (2011) - [j20]Jean-Christophe Gelly
, Agnel Praveen Joseph, Narayanaswamy Srinivasan, Alexandre G. de Brevern
:
iPBA: a tool for protein structure comparison using sequence alignment strategies. Nucleic Acids Res. 39(Web-Server-Issue): 18-23 (2011) - 2010
- [j19]Oruganty Krishnadev, Shveta Bisht
, Narayanaswamy Srinivasan:
Prediction of Protein-Protein Interactions Between Human Host and Two Mycobacterial Organisms. Int. J. Knowl. Discov. Bioinform. 1(1): 1-13 (2010)
2000 – 2009
- 2009
- [j18]Ambrish Roy, Narayanaswamy Srinivasan, Venkatraman S. Gowri:
Molecular and Structural Basis of Drift in the Functions of Closely-Related Homologous Enzyme Domains: Implications for Function Annotation Based on Homology Searches and Structural Genomics. Silico Biol. 9(1-2): S41-S55 (2009) - [c1]Smita Mohanty, Narayanaswamy Srinivasan:
How effective is the data on co-occurrence of domains in multi-domain proteins in prediction of protein-protein interactions? GENSiPS 2009: 1-4 - 2008
- [j17]Oruganty Krishnadev, Narayanaswamy Srinivasan:
A Data Integration Approach to Predict Host-Pathogen Protein-Protein Interactions: Application to Recognize Protein Interactions between Human and a Malarial Parasite. Silico Biol. 8(3-4): 235-250 (2008) - 2007
- [j16]K. G. Tina, Rana Bhadra, Narayanaswamy Srinivasan:
PIC: Protein Interactions Calculator. Nucleic Acids Res. 35(Web-Server-Issue): 473-476 (2007) - 2006
- [j15]V. S. Gowri, Oruganty Krishnadev, C. S. Swamy, Narayanaswamy Srinivasan:
MulPSSM: a database of multiple position-specific scoring matrices of protein domain families. Nucleic Acids Res. 34(Database-Issue): 243-246 (2006) - [j14]Manoj Tyagi, P. Sharma, C. S. Swamy, F. Cadet, Narayanaswamy Srinivasan, Alexandre G. de Brevern
, Bernard O. Offmann:
Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet. Nucleic Acids Res. 34(Web-Server-Issue): 119-123 (2006) - [j13]Rana Bhadra, Sankaran Sandhya
, K. R. Abhinandan, Saikat Chakrabarti, Ramanathan Sowdhamini, Narayanaswamy Srinivasan:
Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains. Nucleic Acids Res. 34(Web-Server-Issue): 143-146 (2006) - [j12]Ganesan Pugalenthi
, Khader Shameer
, Narayanaswamy Srinivasan, Ramanathan Sowdhamini:
HARMONY: a server for the assessment of protein structures. Nucleic Acids Res. 34(Web-Server-Issue): 231-234 (2006) - 2005
- [j11]B. Anand
, V. S. Gowri, Narayanaswamy Srinivasan:
Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues. Bioinform. 21(12): 2821-2826 (2005) - [j10]Rana Bhadra, Narayanaswamy Srinivasan, Shashi B. Pandit:
A New Domain Family in the Superfamily of Alkaline Phosphatases. Silico Biol. 5(4): 379-387 (2005) - [j9]Oruganty Krishnadev
, N. Rekha, Shashi B. Pandit
, S. Abhiman, Smita Mohanty, L. S. Swapna, Swanand P. Gore
, Narayanaswamy Srinivasan:
PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families. Nucleic Acids Res. 33(Web-Server-Issue): 126-129 (2005) - 2004
- [j8]Shashi B. Pandit
, Rana Bhadra, V. S. Gowri, S. Balaji, B. Anand
, Narayanaswamy Srinivasan:
SUPFAM: A database of sequence superfamilies of protein domains. BMC Bioinform. 5: 28 (2004) - [j7]Seema Namboori, Narayanaswamy Srinivasan, Shashi B. Pandit:
Recognition of remotely related structural homologues using sequence profiles of aligned homologous protein structures. Silico Biol. 4(4): 445-460 (2004) - [j6]Shashi B. Pandit, Narayanaswamy Srinivasan:
Identification and analysis of a new family of bacterial serine proteinases. Silico Biol. 4(4): 563-572 (2004) - [j5]A. Krupa, K. R. Abhinandan, Narayanaswamy Srinivasan:
KinG: a database of protein kinases in genomes. Nucleic Acids Res. 32(Database-Issue): 153-155 (2004) - 2003
- [j4]V. S. Gowri, Shashi B. Pandit
, P. S. Karthik
, Narayanaswamy Srinivasan, S. Balaji:
Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database. Nucleic Acids Res. 31(1): 486-488 (2003) - 2002
- [j3]Shashi B. Pandit, Dilip Gosar, S. Abhiman, S. Sujatha, Sayali S. Dixit, Natasha S. Mhatre, Ramanathan Sowdhamini, Narayanaswamy Srinivasan:
SUPFAM - a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes. Nucleic Acids Res. 30(1): 289-293 (2002) - 2001
- [j2]S. Sujatha, S. Balaji, Narayanaswamy Srinivasan:
PALI: a database of alignments and phylogeny of homologous protein structures. Bioinform. 17(4): 375-376 (2001) - [j1]S. Balaji, S. Sujatha, S. Sai Chetan Kumar, Narayanaswamy Srinivasan:
PALI - a database of Phylogeny and ALIgnment of homologous protein structures. Nucleic Acids Res. 29(1): 61-65 (2001)
Coauthor Index
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