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Jo Vandesompele
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2020 – today
- 2022
- [j20]Annelien Morlion
, Eva Hulstaert, Marieke Vromman
, Jasper Anckaert, Celine Everaert, Jo Vandesompele, Pieter Mestdagh:
CiLiQuant: Quantification of RNA Junction Reads Based on Their Circular or Linear Transcript Origin. Frontiers Bioinform. 2: 834034 (2022) - [j19]Marieke Vromman
, Jasper Anckaert, Jo Vandesompele, Pieter-Jan Volders:
CIRCprimerXL: Convenient and High-Throughput PCR Primer Design for Circular RNA Quantification. Frontiers Bioinform. 2: 834655 (2022) - 2021
- [j18]Marieke Vromman
, Jo Vandesompele
, Pieter-Jan Volders
:
Closing the circle: current state and perspectives of circular RNA databases. Briefings Bioinform. 22(1): 288-297 (2021) - 2020
- [j17]Alemu Takele Assefa
, Jo Vandesompele
, Olivier Thas:
SPsimSeq: semi-parametric simulation of bulk and single-cell RNA-sequencing data. Bioinform. 36(10): 3276-3278 (2020)
2010 – 2019
- 2019
- [j16]Pieter-Jan Volders
, Jasper Anckaert
, Kenneth Verheggen
, Justine Nuytens, Lennart Martens
, Pieter Mestdagh
, Jo Vandesompele
:
LNCipedia 5: towards a reference set of human long non-coding RNAs. Nucleic Acids Res. 47(Database-Issue): D135-D139 (2019) - 2018
- [j15]Francisco Avila Cobos
, Jo Vandesompele
, Pieter Mestdagh
, Katleen De Preter:
Computational deconvolution of transcriptomics data from mixed cell populations. Bioinform. 34(11): 1969-1979 (2018) - 2017
- [j14]Steve Lefever, Jasper Anckaert
, Pieter-Jan Volders, Manuel Luypaert
, Jo Vandesompele
, Pieter Mestdagh
:
decodeRNA - predicting non-coding RNA functions using guilt-by-association. Database J. Biol. Databases Curation 2017: bax042 (2017) - [j13]Francisco Avila Cobos
, Jasper Anckaert
, Pieter-Jan Volders, Celine Everaert
, Dries Rombaut, Jo Vandesompele
, Katleen De Preter, Pieter Mestdagh
:
Zipper plot: visualizing transcriptional activity of genomic regions. BMC Bioinform. 18(1): 231:1-231:9 (2017) - [j12]Steve Lefever
, Filip Pattyn
, Bram De Wilde
, Frauke Coppieters
, Sarah De Keulenaer, Jan Hellemans, Jo Vandesompele
:
High-throughput PCR assay design for targeted resequencing using primerXL. BMC Bioinform. 18(1): 400:1-400:9 (2017) - 2015
- [j11]Jan Ruijter, Steve Lefever, Jasper Anckaert
, Jan Hellemans, Michael W. Pfaffl
, Vladimir Benes, Stephen Bustin
, Jo Vandesompele
, Andreas Untergasser:
RDML-Ninja and RDMLdb for standardized exchange of qPCR data. BMC Bioinform. 16: 197:1-197:7 (2015) - [j10]Pieter-Jan Volders, Kenneth Verheggen
, Gerben Menschaert
, Klaas Vandepoele
, Lennart Martens, Jo Vandesompele
, Pieter Mestdagh
:
An update on LNCipedia: a database for annotated human lncRNA sequences. Nucleic Acids Res. 43(Database-Issue): 174-180 (2015) - 2014
- [j9]Gert Van Peer
, Steve Lefever, Jasper Anckaert, Anneleen Beckers, Ali Rihani
, Alan Van Goethem, Pieter-Jan Volders
, Fjoralba Zeka, Maté Ongenaert
, Pieter Mestdagh
, Jo Vandesompele
:
miRBase Tracker: keeping track of microRNA annotation changes. Database J. Biol. Databases Curation 2014 (2014) - 2013
- [j8]Pieter-Jan Volders
, Kenny Helsens, Xiaowei Wang, Björn Menten
, Lennart Martens
, Kris Gevaert, Jo Vandesompele
, Pieter Mestdagh
:
LNCipedia: a database for annotated human lncRNA transcript sequences and structures. Nucleic Acids Res. 41(Database-Issue): 246-251 (2013) - 2010
- [j7]Joachim M. De Schrijver, Kim De Leeneer
, Steve Lefever, Nick Sabbe, Filip Pattyn
, Filip Van Nieuwerburgh
, Paul Coucke
, Dieter Deforce
, Jo Vandesompele
, Sofie Bekaert, Jan Hellemans, Wim Van Criekinge
:
Analysing 454 amplicon resequencing experiments using the modular and database oriented Variant Identification Pipeline. BMC Bioinform. 11: 269 (2010)
2000 – 2009
- 2009
- [j6]Steve Lefever, Jo Vandesompele
, Frank Speleman, Filip Pattyn
:
RTPrimerDB: the portal for real-time PCR primers and probes. Nucleic Acids Res. 37(Database-Issue): 942-945 (2009) - 2006
- [j5]Filip Pattyn
, Jasmien Hoebeeck, Piet Robbrecht, Evi Michels, Anne De Paepe, Guy Bottu, David Coornaert, Robert Herzog, Frank Speleman, Jo Vandesompele
:
methBLAST and methPrimerDB: web-tools for PCR based methylation analysis. BMC Bioinform. 7: 496 (2006) - [j4]Filip Pattyn
, Piet Robbrecht, Anne De Paepe, Frank Speleman, Jo Vandesompele
:
RTPrimerDB: the real-time PCR primer and probe database, major update 2006. Nucleic Acids Res. 34(Database-Issue): 684-688 (2006) - 2005
- [j3]Björn Menten
, Filip Pattyn
, Katleen De Preter
, Piet Robbrecht, Evi Michels, Karen Buysse, Geert Mortier
, Anne De Paepe, Steven Van Vooren
, Joris Robert Vermeesch
, Yves Moreau
, Bart De Moor, Stefan Vermeulen
, Frank Speleman, Jo Vandesompele
:
arrayCGHbase: an analysis platform for comparative genomic hybridization microarrays. BMC Bioinform. 6: 124 (2005) - 2003
- [j2]Filip Pattyn
, Frank Speleman, Anne De Paepe, Jo Vandesompele
:
RTPrimerDB: the Real-Time PCR primer and probe database. Nucleic Acids Res. 31(1): 122-123 (2003) - 2001
- [j1]Ina I. Vandenbroucke, Jo Vandesompele, Anne De Paepe, Ludwine Messiaen:
Quantification of splice variants using real-time PCR. Nucleic Acids Res. 29(13): 68 (2001)
Coauthor Index
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