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James E. Bray
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2020 – today
- 2022
- [c1]Margaret J. Varga, Holly B. Bratcher, Keith A. Jolley, Odile B. Harrison, James E. Bray, Martin C. J. Maiden:
Visual Analytics Exploration of PubMLST Meningitis Genomic Data. BIBM 2022: 2871-2878
2010 – 2019
- 2017
- [j10]Keith A. Jolley
, James E. Bray
, Martin C. J. Maiden
:
A RESTful application programming interface for the PubMLST molecular typing and genome databases. Database J. Biol. Databases Curation 2017: bax060 (2017) - [j9]Connor Sharp
, James E. Bray
, Nicholas G. Housden
, Martin C. J. Maiden
, Colin Kleanthous
:
Diversity and distribution of nuclease bacteriocins in bacterial genomes revealed using Hidden Markov Models. PLoS Comput. Biol. 13(7) (2017) - 2014
- [j8]Cátia Vaz
, Alexandre P. Francisco
, Mickael Silva
, Keith A. Jolley
, James E. Bray
, Hannes Pouseele, Jörg Rothgänger, Mário Ramirez, João A. Carriço:
TypOn: the microbial typing ontology. J. Biomed. Semant. 5: 43 (2014) - [j7]Andries J. van Tonder
, Shilan Mistry, James E. Bray
, Dorothea M. C. Hill, Alison J. Cody
, Chris L. Farmer, Keith P. Klugman, Anne von Gottberg
, Stephen D. Bentley, Julian Parkhill, Keith A. Jolley
, Martin C. J. Maiden
, Angela B. Brueggemann
:
Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model. PLoS Comput. Biol. 10(8) (2014)
2000 – 2009
- 2004
- [j6]James E. Bray
, Russell L. Marsden, Stuart C. G. Rison
, Alexei Savchenko, Aled M. Edwards
, Janet M. Thornton
, Christine A. Orengo:
A practical and robust sequence search strategy for structural genomics target selection. Bioinform. 20(14): 2288-2295 (2004) - 2003
- [j5]Frances M. G. Pearl
, C. F. Bennett, James E. Bray
, Andrew P. Harrison, Nigel J. Martin, Adrian J. Shepherd
, Ian Sillitoe, Janet M. Thornton
, Christine A. Orengo:
The CATH database: an extended protein family resource for structural and functional genomics. Nucleic Acids Res. 31(1): 452-455 (2003) - [j4]Daniel W. A. Buchan, Stuart C. G. Rison
, James E. Bray
, David A. Lee, Frances M. G. Pearl
, Janet M. Thornton
, Christine A. Orengo:
Gene3D: structural assignments for the biologist and bioinformaticist alike. Nucleic Acids Res. 31(1): 469-473 (2003) - 2001
- [j3]Frances M. G. Pearl
, Nigel J. Martin, James E. Bray
, Daniel W. A. Buchan, Andrew P. Harrison, David A. Lee, Gabrielle A. Reeves
, Adrian J. Shepherd
, Ian Sillitoe, Annabel E. Todd, Janet M. Thornton
, Christine A. Orengo:
A rapid classification protocol for the CATH Domain Database to support structural genomics. Nucleic Acids Res. 29(1): 223-227 (2001) - 2000
- [j2]Frances M. G. Pearl
, David A. Lee, James E. Bray
, Ian Sillitoe, Annabel E. Todd, Andrew P. Harrison, Janet M. Thornton
, Christine A. Orengo:
Assigning genomic sequences to CATH. Nucleic Acids Res. 28(1): 277-282 (2000)
1990 – 1999
- 1999
- [j1]Christine A. Orengo, Frances M. G. Pearl
, James E. Bray
, Annabel E. Todd, A. C. Martin, Loredana Lo Conte, Janet M. Thornton
:
The CATH Database provides insights into protein structure/function relationships. Nucleic Acids Res. 27(1): 275-279 (1999)
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