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ORCIDDeclan G. Bates
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2020 – today
- 2023
[c46]Alexander P. S. Darlington, Ahmad A. Mannan, Declan G. Bates:
Natural Host Feedback Simplifies the Design of Metabolic Switches. CDC 2023: 2693-2698- 2022
- [j23]Laurence Legon
, Christophe Corre, Declan G. Bates, Ahmad A. Mannan:
gcFront: a tool for determining a Pareto front of growth-coupled cell factory designs. Bioinform. 38(14): 3657-3659 (2022) - [c45]Sonal Mistry, Bindi S. Brook, Sina Saffaran, Marc Chikhani, David M. Hannon, John G. Laffey, Tim E. Scott, Luigi Camporota, Jonathan G. Hardman, Declan G. Bates:
A computational cardiopulmonary physiology simulator accurately predicts individual patient responses to changes in mechanical ventilator settings. EMBC 2022: 3261-3264 - [c44]Liam Weaver, Sina Saffaran, Marc Chikhani, John G. Laffey, Timothy E. Scott, Luigi Camporota, Jonathan G. Hardman, Declan G. Bates:
Why Reduced Inspiratory Pressure Could Determine Success of Non-Invasive Ventilation in Acute Hypoxic Respiratory Failure. EMBC 2022: 3265-3268 - [c43]Alexander P. S. Darlington, Declan G. Bates:
Performance and robustness analysis of control strategies for ameliorating cellular host-circuit interactions. ECC 2022: 233-239 - 2021
- [c42]Clara Daudre-Vignier, Marianna Laviola, Anup Das, Declan G. Bates, Jonathan G. Hardman:
Identification of an optimal CPR chest compression protocol. EMBC 2021: 5459-5462 - 2020
- [j22]Nuno M. G. Paulino, Mathias Foo, Jongmin Kim, Declan G. Bates:
On the stability of nucleic acid feedback control systems. Autom. 119: 109103 (2020) - [j21]Mathias Foo, Declan G. Bates, Ozgur E. Akman:
A simplified modelling framework facilitates more complex representations of plant circadian clocks. PLoS Comput. Biol. 16(3) (2020) - [j20]Jack E. Bowyer, Chloe Ding, Benjamin H. Weinberg, Wilson W. Wong, Declan G. Bates:
A mechanistic model of the BLADE platform predicts performance characteristics of 256 different synthetic DNA recombination circuits. PLoS Comput. Biol. 16(12) (2020)
2010 – 2019
- 2019
- [j19]Alexander P. S. Darlington, Jongrae Kim, Declan G. Bates:
Robustness Analysis of a Synthetic Translational Resource Allocation Controller. IEEE Control. Syst. Lett. 3(2): 266-271 (2019) - [j18]Nuno M. G. Paulino, Mathias Foo, Jongmin Kim, Declan G. Bates:
PID and State Feedback Controllers Using DNA Strand Displacement Reactions. IEEE Control. Syst. Lett. 3(4): 805-810 (2019) - [j17]Mathias Foo, Jongrae Kim, Declan G. Bates:
Modelling and Control of Gene Regulatory Networks for Perturbation Mitigation. IEEE ACM Trans. Comput. Biol. Bioinform. 16(2): 583-595 (2019) - [c41]Alexander P. S. Darlington, Declan G. Bates:
Combining transcriptional and translational resource allocation controllers for synthetic circuits. CDC 2019: 6602-6609 - [c40]Marianna Laviola, Christian Niklas, Husam Alahmadi, Anup Das, Declan G. Bates, Jonathan G. Hardman:
High oxygen fraction during airway opening is key to effective airway rescue in obese subjects. EMBC 2019: 2357-2360 - [c39]Timothy E. Scott, Mainul Haque, Anup Das, Ian Cliff, Declan G. Bates, Jonathan G. Hardman:
Efficacy of continuous positive airway pressure in casualties suffering from primary blast lung injury: A modeling study. EMBC 2019: 4965-4968 - 2018
- [c38]Nuno M. G. Paulino, Mathie Foo, Jongmin Kim, Declan G. Bates:
Uncertainty Modelling and Stability Robustness Analysis of Nucleic Acid-Based Feedback Control Systems. CDC 2018: 1077-1082 - [c37]Alexander P. S. Darlington, Declan G. Bates:
On the design of integral translational resource allocation controllers for synthetic cellular circuitry. CDC 2018: 1104-1109 - [i1]Nuno M. G. Paulino, Mathias Foo, Jongmin Kim, Declan G. Bates:
On the stability of nucleic acid feedback controllers. CoRR abs/1812.01481 (2018) - 2017
- [j16]Mathias Foo, Jongrae Kim, Rucha Sawlekar, Declan G. Bates:
Design of an embedded inverse-feedforward biomolecular tracking controller for enzymatic reaction processes. Comput. Chem. Eng. 99: 145-157 (2017) - [c36]Marianna Laviola, Anup Das, Marc Chikhani, Declan G. Bates, Jonathan G. Hardman:
Investigating the effect of cardiac oscillations and deadspace gas mixing during apnea using computer simulation. EMBC 2017: 337-340 - [c35]Sina Saffaran, Anup Das, Jonathan G. Hardman, Nadir Yehya, Declan G. Bates:
Development and validation of a computational simulator for pediatric acute respiratory distress syndrome patients. EMBC 2017: 1521-1524 - [c34]Mathias Foo, Declan G. Bates, Jongrae Kim:
System identification of gene regulatory networks for perturbation mitigation via feedback control. ICNSC 2017: 216-221 - 2016
- [j15]Jack E. Bowyer, Jia Zhao, Pakpoom Subsoontorn, Wilson Wong, Susan Rosser, Declan G. Bates:
Mechanistic Modeling of a Rewritable Recombinase Addressable Data Module. IEEE Trans. Biomed. Circuits Syst. 10(6): 1161-1170 (2016) - [c33]Jack E. Bowyer, Victoria Hsiao, Declan G. Bates:
Development and experimental validation of a mechanistic model of a recombinase-based temporal logic gate. BioCAS 2016: 464-467 - [c32]Rucha Sawlekar, Mathias Foo, Declan G. Bates:
Robustness analysis of DNA-based biomolecular feedback controllers to parametric and time delay uncertainties. BioCAS 2016: 548-551 - [c31]Mathias Foo, Rucha Sawlekar, Vishwesh V. Kulkarni, Declan G. Bates:
Biologically inspired design of feedback control systems implemented using DNA strand displacement reactions. EMBC 2016: 1455-1458 - [c30]Alexander Darlington, Declan G. Bates:
Host-aware modelling of a synthetic genetic oscillator. EMBC 2016: 1463-1466 - [c29]Anup Das, Mainul Haque, Marc Chikhani, Wenfei Wang, Jonathan G. Hardman, Declan G. Bates:
Creating virtual ARDS patients. EMBC 2016: 2729-2732 - [c28]Mathias Foo, Rucha Sawlekar, Jongmin Kim, Declan G. Bates, Guy-Bart Stan, Vishwesh V. Kulkarni:
Biomolecular implementation of nonlinear system theoretic operators. ECC 2016: 1824-1831 - 2015
- [c27]Mariaconcetta Bilotta, Carlo Cosentino, Declan G. Bates, Luca Salerno, Francesco Amato:
Retroactivity analysis of a chemical reaction network module for the subtraction of molecular fluxes. EMBC 2015: 941-944 - [c26]Jack E. Bowyer, Jia Zhao, Susan Rosser, Sean Colloms, Declan G. Bates:
Development and experimental validation of a mechanistic model of in vitro DNA recombination. EMBC 2015: 945-948 - [c25]Rucha Sawlekar, Francesco Montefusco, Vishwesh V. Kulkarni, Declan G. Bates:
Biomolecular implementation of a quasi sliding mode feedback controller based on DNA strand displacement reactions. EMBC 2015: 949-952 - [c24]Anup Das, Mainul Haque, Marc Chikhani, Wenfei Wang, Tayyba Ali, Oana Cole, Jonathan G. Hardman, Declan G. Bates:
Development of an integrated model of cardiovascular and pulmonary physiology for the evaluation of mechanical ventilation strategies. EMBC 2015: 5319-5322 - 2013
- [j14]Luca Salerno, Carlo Cosentino, Alessio Merola, Declan G. Bates, Francesco Amato:
Validation of a model of the GAL regulatory system via robustness analysis of its bistability characteristics. BMC Syst. Biol. 7: 39 (2013) - [j13]Anup Das, Prathyush P. Menon, Jonathan G. Hardman, Declan G. Bates:
Optimization of Mechanical Ventilator Settings for Pulmonary Disease States. IEEE Trans. Biomed. Eng. 60(6): 1599-1607 (2013) - 2012
- [j12]Carlo Cosentino, Luca Salerno, Antonio Passanti, Alessio Merola, Declan G. Bates, Francesco Amato:
Structural Bistability of the GAL Regulatory Network and Characterization of its Domains of Attraction. J. Comput. Biol. 19(2): 148-162 (2012) - [c23]Francesco Montefusco, Arno Steinacher, Ozgur E. Akman, Declan G. Bates, Orkun S. Soyer:
On the role of ultrasensitivity in biomolecular control systems. CDC 2012: 3602-3607 - [c22]Atul Krishna Kamath, Prathyush P. Menon, Martine Ganet-Schoeller, Guillaume Maurice, Samir Bennani, Declan G. Bates:
Robust Safety Margin Assessment and Constrained Worst-Case Analysis of a Launcher Vehicle. ROCOND 2012: 254-259 - [c21]Atul Krishna Kamath, Prathyush P. Menon, Martine Ganet-Schoeller, Guillaume Maurice, Samir Bennani, Declan G. Bates:
Worst Case Analysis of a Launcher Vehicle Using Surrogate Models. ROCOND 2012: 260-265 - 2011
- [j11]Nikolay V. Kotov, Declan G. Bates, Antonina N. Gizatullina, Bulat Gilaziev, Rustem N. Khairullin, Michael Z. Q. Chen, Ignat Drozdov, Yoshinori Umezawa, Christian Hundhausen, Alexey Aleksandrov, Xing-Gang Yan, Sarah K. Spurgeon, C. Mark Smales, Najl V. Valeyev:
Computational modelling elucidates the mechanism of ciliary regulation in health and disease. BMC Syst. Biol. 5: 143 (2011) - [c20]Yun-Bo Zhao, Jongrae Kim, Declan G. Bates:
LFT-free μ-analysis of LTI/LPTV systems. CACSD 2011: 638-643 - [c19]Francesco Montefusco, Carlo Cosentino, Francesco Amato, Declan G. Bates:
Reverse-engineering biological interaction networks from noisy data using Regularized Least Squares and Instrumental Variables. CDC/ECC 2011: 4395-4400
2000 – 2009
- 2008
- [j10]Jongrae Kim, Declan G. Bates, Ian Postlethwaite, Pat Heslop-Harrison, Kwang-Hyun Cho:
Linear time-varying models can reveal non-linear interactions of biomolecular regulatory networks using multiple time-series data. Bioinform. 24(10): 1286-1292 (2008) - [j9]Najl V. Valeyev, Declan G. Bates, Pat Heslop-Harrison, Ian Postlethwaite, Nikolay V. Kotov:
Elucidating the mechanisms of cooperative calcium-calmodulin interactions: a structural systems biology approach. BMC Syst. Biol. 2: 48 (2008) - [j8]Jongrae Kim, Declan G. Bates, Ian Postlethwaite:
Evaluation of Stochastic Effects on Biomolecular Networks Using the Generalized Nyquist Stability Criterion. IEEE Trans. Autom. Control. 53(8): 1937-1941 (2008) - [c18]Sonny Martin, Iain Wallace, Declan G. Bates:
Development and validation of an aero-engine simulation model for advanced controller design. ACC 2008: 2334-2339 - 2007
- [j7]Andrés Marcos, Declan G. Bates, Ian Postlethwaite:
A symbolic matrix decomposition algorithm for reduced order linear fractional transformation modelling. Autom. 43(7): 1211-1218 (2007) - [j6]Jongrae Kim, Declan G. Bates, Ian Postlethwaite, Pat Heslop-Harrison, Kwang-Hyun Cho:
Least-squares methods for identifying biochemical regulatory networks from noisy measurements. BMC Bioinform. 8 (2007) - [j5]Najl V. Valeyev, Nikolai V. Kotov, Ian Postlethwaite, Declan G. Bates:
Mathematical modelling of multi-site protein-ligand interactions. BMC Syst. Biol. 1(S-1): P65 (2007) - [j4]Jongrae Kim, Pat Heslop-Harrison, Ian Postlethwaite, Declan G. Bates:
Stochastic Noise and Synchronisation during Dictyostelium Aggregation Make cAMP Oscillations Robust. PLoS Comput. Biol. 3(11) (2007) - [c17]Sajjad Fekri, Declan G. Bates, Ian Postlethwaite:
Linear vs. Nonlinear Robustness Analysis: A Case Study. CCA 2007: 753-758 - [c16]Prathyush P. Menon, Declan G. Bates, Ian Postlethwaite:
Deterministic versus evolutionary optimisation methods for nonlinear robustness analysis of flight control laws. IEEE Congress on Evolutionary Computation 2007: 1910-1917 - [c15]Declan G. Bates, Sajjad Fekri, Prathyush P. Menon, Ian Postlethwaite:
On the robustness analysis of nonlinear systems subject to time-invariant and/or time-varying uncertainty. IEEE Congress on Evolutionary Computation 2007: 3639-3645 - 2006
- [j3]Jongrae Kim, Declan G. Bates, Ian Postlethwaite:
Nonlinear robust performance analysis using complex-step gradient approximation. Autom. 42(1): 177-182 (2006) - [j2]Jongrae Kim, Declan G. Bates, Ian Postlethwaite:
Robustness analysis of linear periodic time-varying systems subject to structured uncertainty. Syst. Control. Lett. 55(9): 719-725 (2006) - [j1]Prathyush P. Menon, Jongrae Kim, Declan G. Bates, Ian Postlethwaite:
Clearance of Nonlinear Flight Control Laws Using Hybrid Evolutionary Optimization. IEEE Trans. Evol. Comput. 10(6): 689-699 (2006) - [c14]Prathyush P. Menon, Declan G. Bates, Ian Postlethwaite:
A deterministic hybrid optimisation algorithm for nonlinear flight control systems analysis. ACC 2006 - [c13]Prathyush P. Menon, Guido Herrmann, Matthew C. Turner, Declan G. Bates, Ian Postlethwaite:
General Anti-windup synthesis for input constrained nonlinear systems controlled using nonlinear dynamic inversion. CDC 2006: 5435-5440 - 2005
- [c12]Jongrae Kim, Declan G. Bates, Ian Postlethwaite:
Nonlinear Robust Performance Analysis using Gradient-Based Optimisation - An Aeroelastic Case-Study. CDC/ECC 2005: 2781-2786 - [c11]Prathyush P. Menon, Declan G. Bates, Ian Postlethwaite:
Hybrid Evolutionary Optimisation Methods for the Clearance of Nonlinear Flight Control Laws. CDC/ECC 2005: 4053-4058 - [c10]Jongrae Kim, Declan G. Bates, Ian Postlethwaite, Lan Ma, Pablo A. Iglesias:
Robustness Analysis of Biochemical Networks using μ-Analysis and Hybrid Optimisation. CDC/ECC 2005: 6234-6239 - [c9]Andrés Marcos, Declan G. Bates, Ian Postlethwaite:
Control oriented uncertainty modelling using μ sensitivities and skewed μ analysis tools. CDC/ECC 2005: 6436-6441 - 2004
- [c8]Declan G. Bates, Thomas Mannchen, Ridwan Kureemun, Ian Postlethwaite:
μ-Tools for the clearance of flight control laws. ACC 2004: 5616-5621 - 2003
- [c7]Declan G. Bates, Ridwan Kureemun, Thomas Mannchen:
Clearance of the VAAC Harrier CL002 flight control law using μ-analysis techniques. ECC 2003: 1263-1268 - [c6]Thomas Mannchen, Declan G. Bates:
Improved computation of mixed μ bounds for flight control law analysis. ECC 2003: 1274-1279 - 2002
- [c5]Nabil Aouf, Declan G. Bates:
Scheduling of a partitioned IFPC design for a VSTOL aircraft. ACC 2002: 773-778 - 2001
- [c4]Declan G. Bates:
H∞, optimisation for L1 performance objectives. ECC 2001: 396-401 - [c3]Martin J. Hayes, Declan G. Bates, Anthony M. Holohan:
New algorithms for upper and lower bounds on the mixed/real structured singular value. ECC 2001: 1295-1302 - [c2]S. L. Gatley, Declan G. Bates, M. J. Hayes, Ian Postlethwaite:
Robustness analysis of integrated flight and propulsion control systems for V/STOL aircraft. ECC 2001: 2040-2045 - [c1]Matthew C. Turner, Declan G. Bates, Ian Postlethwaite:
A conditioning strategy for performance improvement of an integrated flight and propulsion control system for a V/STOL aircraft. ECC 2001: 3050-3055
Coauthor Index
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