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2020 – today
- 2024
[i1]Sobhan Hemati, Krishna R. Kalari, Hamid R. Tizhoosh:
A Short Survey on Set-Based Aggregation Techniques for Single-Vector WSI Representation in Digital Pathology. CoRR abs/2409.04615 (2024)- 2020
- [j10]Wenjiang Deng
, Tian Mou, Krishna R. Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Trung-Nghia Vu:
Alternating EM algorithm for a bilinear model in isoform quantification from RNA-seq data. Bioinform. 36(3): 805-812 (2020)
2010 – 2019
- 2019
- [j9]Trung-Nghia Vu, Ha-Nam Nguyen, Stefano Calza, Krishna R. Kalari, Liewei Wang, Yudi Pawitan:
Cell-level somatic mutation detection from single-cell RNA sequencing. Bioinform. 35(22): 4679-4687 (2019) - 2018
- [j8]Trung-Nghia Vu, Quin F. Wills, Krishna R. Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Mattias Rantalainen:
Isoform-level gene expression patterns in single-cell RNA-sequencing data. Bioinform. 34(14): 2392-2400 (2018) - [j7]Saurabh Baheti, Xiaojia Tang, Daniel R. O'Brien, Nicholas Chia, Lewis R. Roberts, Heidi Nelson, Judy C. Boughey, Liewei Wang, Matthew P. Goetz, Jean-Pierre A. Kocher, Krishna R. Kalari:
HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data. BMC Bioinform. 19(1): 271:1-271:11 (2018) - 2016
- [j6]Khader Shameer, Lokesh P. Tripathi, Krishna R. Kalari, Joel T. Dudley, Ramanathan Sowdhamini:
Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment. Briefings Bioinform. 17(5): 841-862 (2016) - [j5]Trung-Nghia Vu, Quin F. Wills, Krishna R. Kalari, Nifang Niu, Liewei Wang, Mattias Rantalainen, Yudi Pawitan:
Beta-Poisson model for single-cell RNA-seq data analyses. Bioinform. 32(14): 2128-2135 (2016) - [c1]Arjun P. Athreya, Alan J. Gaglio, Zbigniew T. Kalbarczyk, Ravishankar K. Iyer, Junmei Cairns, Krishna R. Kalari, Richard M. Weinshilboum, Liewei Wang:
Unsupervised single-cell analysis in triple-negative breast cancer: A case study. BIBM 2016: 556-563 - 2014
- [j4]Krishna R. Kalari, Asha A. Nair, Jaysheel D. Bhavsar, Daniel R. O'Brien, Jaime I. Dávila, Matthew A. Bockol, Jinfu J. Nie, Xiaojia Tang, Saurabh Baheti, Jay B. Doughty, Sumit Middha, Hugues Sicotte, E. Aubrey Thompson, Yan W. Asmann, Jean-Pierre A. Kocher:
MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing. BMC Bioinform. 15: 224 (2014) - 2012
- [j3]Yan W. Asmann, Sumit Middha, Asif Hossain, Saurabh Baheti, Ying Li, High-Seng Chai, Zhifu Sun, Patrick H. Duffy, Ahmed A. Hadad, Asha A. Nair, Xiaoyu Liu, Yuji Zhang, Eric W. Klee, Krishna R. Kalari, Jean-Pierre A. Kocher:
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data. Bioinform. 28(2): 277-278 (2012)
2000 – 2009
- 2008
- [j2]Krishna R. Kalari, Thomas L. Casavant, Todd E. Scheetz:
A knowledge-based approach to predict intragenic deletions or duplications. Bioinform. 24(18): 1975-1979 (2008) - 2006
- [j1]Krishna R. Kalari, Melanie Casavant, Thomas B. Bair, Henry L. Keen, Josep M. Comeron, Thomas L. Casavant, Todd E. Scheetz:
First Exons and Introns - A Survey of GC Content and Gene Structure in the Human Genome. Silico Biol. 6(3): 237-242 (2006)
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