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2020 – today
- 2025
[j44]Oscar H. Ibarra, Ian McQuillan:
On decision problems concerning contextual insertions and deletions. Theor. Comput. Sci. 1024: 114905 (2025)- 2024
- [c48]Oscar H. Ibarra, Ian McQuillan:
Techniques for Showing the Decidability of the Boundedness Problem of Language Acceptors. DLT 2024: 156-172 - [i26]Nazifa Azam Khan, Mikolaj Cieslak, Ian McQuillan:
Improving Deep Learning Predictions with Simulated Images, and Vice Versa. CoRR abs/2404.05128 (2024) - [i25]Oscar H. Ibarra, Ian McQuillan:
Techniques for Showing the Decidability of the Boundedness Problem of Language Acceptors. CoRR abs/2405.08988 (2024) - [i24]Ali Lotfi, Ian McQuillan:
Optimal L-Systems for Stochastic L-system Inference Problems. CoRR abs/2409.02259 (2024) - 2023
- [j43]Oscar H. Ibarra, Ian McQuillan
:
New characterizations of exponential, elementary, and non-elementary time-bounded Turing machines. Inf. Comput. 292: 105027 (2023) - [j42]Oscar H. Ibarra, Ian McQuillan:
On the complexity of decision problems for some classes of machines and applications. Inf. Comput. 294: 105080 (2023) - [j41]Jozef Jirásek, Ian McQuillan:
Visit-Bounded Stack Automata. Theory Comput. Syst. 67(5): 956-975 (2023) - [j40]Jason Bernard, Ian McQuillan:
Stochastic L-system inference from multiple string sequence inputs. Soft Comput. 27(10): 6783-6798 (2023) - [c47]Oscar H. Ibarra, Ian McQuillan:
On the Containment Problem for Deterministic Multicounter Machine Models. ATVA (1) 2023: 74-94 - [c46]Pascal Baumann, Flavio D'Alessandro, Moses Ganardi, Oscar H. Ibarra, Ian McQuillan, Lia Schütze, Georg Zetzsche:
Unboundedness Problems for Machines with Reversal-Bounded Counters. FoSSaCS 2023: 240-264 - [i23]Pascal Baumann, Flavio D'Alessandro, Moses Ganardi, Oscar H. Ibarra, Ian McQuillan, Lia Schütze, Georg Zetzsche:
Unboundedness problems for machines with reversal-bounded counters. CoRR abs/2301.10198 (2023) - 2022
- [c45]Oscar H. Ibarra, Ian McQuillan:
On the Complexity of Decision Problems for Counter Machines with Applications to Coding Theory. DLT 2022: 177-188 - [c44]Jozef Jirásek, Ian McQuillan:
Visit-Bounded Stack Automata. DLT 2022: 189-200 - [i22]Oscar H. Ibarra, Jozef Jirásek, Ian McQuillan, Luca Prigioniero:
Space Complexity of Stack Automata Models. CoRR abs/2212.00891 (2022) - [i21]Oscar H. Ibarra, Ian McQuillan:
Generalizations of Checking Stack Automata: Characterizations and Hierarchies. CoRR abs/2212.00897 (2022) - [i20]Oscar H. Ibarra, Ian McQuillan:
Semilinearity of Families of Languages. CoRR abs/2212.01301 (2022) - [i19]Arturo Carpi, Flavio D'Alessandro, Oscar H. Ibarra, Ian McQuillan:
Relationships Between Bounded Languages, Counter Machines, Finite-Index Grammars, Ambiguity, and Commutative Regularity. CoRR abs/2212.03359 (2022) - [i18]Oscar H. Ibarra, Ian McQuillan:
On Families of Full Trios Containing Counter Machine Languages. CoRR abs/2212.03791 (2022) - [i17]Oscar H. Ibarra, Ian McQuillan:
State Grammars with Stores. CoRR abs/2212.03992 (2022) - 2021
- [j39]Katie L. Ovens, Farhad Maleki, B. Frank Eames, Ian McQuillan:
Juxtapose: a gene-embedding approach for comparing co-expression networks. BMC Bioinform. 22(1): 125 (2021) - [j38]Flavio D'Alessandro, Oscar H. Ibarra, Ian McQuillan:
On finite-index indexed grammars and their restrictions. Inf. Comput. 279: 104613 (2021) - [j37]Oscar H. Ibarra, Ian McQuillan:
Generalizations of Checking Stack Automata: Characterizations and Hierarchies. Int. J. Found. Comput. Sci. 32(5): 481-508 (2021) - [j36]Oscar H. Ibarra, Jozef Jirásek, Ian McQuillan, Luca Prigioniero:
Space Complexity of Stack Automata Models. Int. J. Found. Comput. Sci. 32(6): 801-823 (2021) - [j35]Ian McQuillan, Shinnosuke Seki:
Preface. Nat. Comput. 20(2): 191-192 (2021) - [j34]Jason Bernard, Ian McQuillan:
Techniques for inferring context-free Lindenmayer systems with genetic algorithm. Swarm Evol. Comput. 64: 100893 (2021) - [j33]Arturo Carpi, Flavio D'Alessandro, Oscar H. Ibarra, Ian McQuillan:
Relationships between bounded languages, counter machines, finite-index grammars, ambiguity, and commutative regularity. Theor. Comput. Sci. 862: 97-118 (2021) - 2020
- [j32]Oscar H. Ibarra, Ian McQuillan:
Semilinearity of Families of Languages. Int. J. Found. Comput. Sci. 31(8): 1179-1198 (2020) - [c43]Katie L. Ovens, B. Frank Eames, Ian McQuillan:
The impact of sample size and tissue type on the reproducibility of gene co-expression networks. BCB 2020: 12:1-12:10 - [c42]Nazifa Azam Khan, Oliver A. S. Lyon, Mark G. Eramian, Ian McQuillan:
A Novel Technique Combining Image Processing, Plant Development Properties, and the Hungarian Algorithm, to Improve Leaf Detection in Maize. CVPR Workshops 2020: 330-339 - [c41]Oscar H. Ibarra, Jozef Jirásek Jr., Ian McQuillan, Luca Prigioniero:
Space Complexity of Stack Automata Models. DLT 2020: 137-149 - [c40]Jason Bernard, Ian McQuillan:
Inferring Temporal Parametric L-systems Using Cartesian Genetic Programming. ICTAI 2020: 580-588 - [i16]Jason Bernard, Ian McQuillan:
Stochastic L-system Inference from Multiple String Sequence Inputs. CoRR abs/2001.10922 (2020) - [i15]Rifat Zahan, Ian McQuillan, Nathaniel D. Osgood:
DNA Methylation Data to Predict Suicidal and Non-Suicidal Deaths: A Machine Learning Approach. CoRR abs/2004.01819 (2020) - [i14]Nazifa Azam Khan, Oliver A. S. Lyon, Mark G. Eramian, Ian McQuillan:
A Novel Technique Combining Image Processing, Plant Development Properties, and the Hungarian Algorithm, to Improve Leaf Detection in Maize. CoRR abs/2005.09022 (2020) - [i13]Oscar H. Ibarra, Ian McQuillan:
On Store Languages and Applications. CoRR abs/2010.00523 (2020)
2010 – 2019
- 2019
- [j31]Oscar H. Ibarra, Ian McQuillan:
On store languages and applications. Inf. Comput. 267: 28-48 (2019) - [j30]Joey Eremondi, Oscar H. Ibarra, Ian McQuillan:
Insertion operations on deterministic reversal-bounded counter machines. J. Comput. Syst. Sci. 104: 244-257 (2019) - [j29]Oscar H. Ibarra, Ian McQuillan, Bala Ravikumar:
On counting functions and slenderness of languages. Theor. Comput. Sci. 777: 356-378 (2019) - [j28]Oscar H. Ibarra, Ian McQuillan:
State grammars with stores. Theor. Comput. Sci. 798: 23-39 (2019) - [j27]Oscar H. Ibarra, Ian McQuillan:
On families of full trios containing counter machine languages. Theor. Comput. Sci. 799: 71-93 (2019) - [c39]Farhad Maleki, Katie L. Ovens, Ian McQuillan, Elham Rezaei, Alan M. Rosenberg, Anthony J. Kusalik:
Gene Set Databases: A Fountain of Knowledge or a Siren Call? BCB 2019: 269-278 - [e2]Ian McQuillan, Shinnosuke Seki:
Unconventional Computation and Natural Computation - 18th International Conference, UCNC 2019, Tokyo, Japan, June 3-7, 2019, Proceedings. Lecture Notes in Computer Science 11493, Springer 2019, ISBN 978-3-030-19310-2 [contents] - [i12]Joey Eremondi, Oscar H. Ibarra, Ian McQuillan:
On the Density of Context-Free and Counter Languages. CoRR abs/1903.03001 (2019) - [i11]Oscar H. Ibarra, Ian McQuillan:
On the Density of Languages Accepted by Turing Machines and Other Machine Models. CoRR abs/1903.03018 (2019) - [i10]Mark Daley, Mark G. Eramian, Christopher Power, Ian McQuillan:
From Helmut Jürgensen's Former Students: The Game of Informatics Research. CoRR abs/1903.03405 (2019) - [i9]Oscar H. Ibarra, Ian McQuillan, Bala Ravikumar:
On counting functions and slenderness of languages. CoRR abs/1903.03504 (2019) - [i8]Joey Eremondi, Oscar H. Ibarra, Ian McQuillan:
Insertion Operations on Deterministic Reversal-Bounded Counter Machines. CoRR abs/1903.03518 (2019) - [i7]Jason Bernard, Ian McQuillan:
Techniques for Inferring Context-Free Lindenmayer Systems With Genetic Algorithm. CoRR abs/1906.08860 (2019) - 2018
- [j26]Joey Eremondi, Oscar H. Ibarra, Ian McQuillan:
On the complexity and decidability of some problems involving shuffle. Inf. Comput. 259(2): 214-224 (2018) - [j25]Joey Eremondi, Oscar H. Ibarra, Ian McQuillan:
On the Density of Context-Free and Counter Languages. Int. J. Found. Comput. Sci. 29(2): 233-250 (2018) - [j24]Mark Daley, Mark G. Eramian, Christopher Power, Ian McQuillan:
From Helmut Jürgensen's Former Students: The Game of Informatics Research. J. Autom. Lang. Comb. 23(1-3): 127-141 (2018) - [j23]Oscar H. Ibarra, Ian McQuillan:
On the Density of Languages Accepted by Turing Machines and Other Machine Models. J. Autom. Lang. Comb. 23(1-3): 189-199 (2018) - [j22]Oscar H. Ibarra, Ian McQuillan:
Variations of checking stack automata: Obtaining unexpected decidability properties. Theor. Comput. Sci. 738: 1-12 (2018) - [j21]Oscar H. Ibarra, Ian McQuillan:
On store languages of language acceptors. Theor. Comput. Sci. 745: 114-132 (2018) - [c38]Farhad Maleki, Katie L. Ovens, Ian McQuillan, Anthony J. Kusalik:
Sample Size and Reproducibility of Gene Set Analysis. BIBM 2018: 122-129 - [c37]Lingling Jin, Ian McQuillan:
Prediction of transposable elements evolution using tabu search. BIBM 2018: 665-670 - [c36]Jason Bernard, Ian McQuillan:
New Techniques for Inferring L-systems Using Genetic Algorithm. BIOMA 2018: 13-25 - [c35]Oscar H. Ibarra, Ian McQuillan:
State Grammars with Stores. DCFS 2018: 163-174 - [c34]Oscar H. Ibarra, Ian McQuillan:
Generalizations of Checking Stack Automata: Characterizations and Hierarchies. DLT 2018: 416-428 - [c33]Oscar H. Ibarra, Ian McQuillan, Bala Ravikumar:
On Counting Functions of Languages. DLT 2018: 429-440 - [c32]Rifat Zahan, Ian McQuillan, Nathaniel Osgood:
DNA Methylation Data to Predict Suicidal and Non-Suicidal Deaths: A Machine Learning Approach. ICHI 2018: 363-365 - [c31]Jason Bernard, Ian McQuillan:
Inferring Stochastic L-Systems Using a Hybrid Greedy Algorithm. ICTAI 2018: 600-607 - [c30]Jason Bernard, Ian McQuillan:
A Fast and Reliable Hybrid Approach for Inferring L-systems . ALIFE 2018: 444-451 - [c29]Ian McQuillan, Jason Bernard, Przemyslaw Prusinkiewicz:
Algorithms for Inferring Context-Sensitive L-Systems. UCNC 2018: 117-130 - [c28]Oscar H. Ibarra, Ian McQuillan:
Semilinearity of Families of Languages. CIAA 2018: 211-222 - [p1]Oscar H. Ibarra, Ian McQuillan:
Input-Position-Restricted Models of Language Acceptors. Reversibility and Universality 2018: 357-372 - 2017
- [j20]Joey Eremondi, Oscar H. Ibarra, Ian McQuillan:
Deletion operations on deterministic families of automata. Inf. Comput. 256: 237-252 (2017) - [c27]T. M. Rezwanul Islam, Ian McQuillan:
CSA-X: Modularized Constrained Multiple Sequence Alignment. AlCoB 2017: 143-154 - [c26]Oscar H. Ibarra, Ian McQuillan:
Variations of Checking Stack Automata: Obtaining Unexpected Decidability Properties. DLT 2017: 235-246 - [c25]Flavio D'Alessandro, Oscar H. Ibarra, Ian McQuillan:
On Finite-Index Indexed Grammars and Their Restrictions. LATA 2017: 287-298 - [c24]Nazifa Azam Khan, Ian McQuillan:
Descrambling Order Analysis in Ciliates. UCNC 2017: 206-219 - [i6]Oscar H. Ibarra, Ian McQuillan:
On Store Languages of Language Acceptors. CoRR abs/1702.07388 (2017) - [i5]Oscar H. Ibarra, Ian McQuillan:
Variations of Checking Stack Automata: Obtaining Unexpected Decidability Properties. CoRR abs/1705.09732 (2017) - [i4]Jason Bernard, Ian McQuillan:
New Techniques for Inferring L-Systems Using Genetic Algorithm. CoRR abs/1712.00180 (2017) - 2016
- [j19]Lingling Jin, Ian McQuillan:
Computational modelling of interruptional activities between transposable elements using grammars and the linear ordering problem. Soft Comput. 20(1): 19-35 (2016) - [j18]Oscar H. Ibarra, Ian McQuillan:
The effect of end-markers on counter machines and commutativity. Theor. Comput. Sci. 627: 71-81 (2016) - [c23]Lingling Jin, Ian McQuillan, Longhai Li:
Computational identification of regions that influence activity of transposable elements in the human genome. BIBM 2016: 592-599 - [c22]Oscar H. Ibarra, Ian McQuillan:
On Families of Full Trios Containing Counter Machine Languages. DLT 2016: 216-228 - [c21]Oscar H. Ibarra, Ian McQuillan:
On Bounded Semilinear Languages, Counter Machines, and Finite-Index ET0L. CIAA 2016: 138-149 - [i3]Joey Eremondi, Oscar H. Ibarra, Ian McQuillan:
On the Complexity and Decidability of Some Problems Involving Shuffle. CoRR abs/1606.01199 (2016) - [i2]Joey Eremondi, Oscar H. Ibarra, Ian McQuillan:
Deletion Operations on Deterministic Families of Automata. CoRR abs/1607.00931 (2016) - [i1]Flavio D'Alessandro, Oscar H. Ibarra, Ian McQuillan:
On Finite-Index Indexed Grammars and Their Restrictions. CoRR abs/1610.06366 (2016) - 2015
- [c20]Joey Eremondi, Oscar H. Ibarra, Ian McQuillan:
On the Complexity and Decidability of Some Problems Involving Shuffle. DCFS 2015: 105-116 - [c19]Joey Eremondi, Oscar H. Ibarra, Ian McQuillan:
On the Density of Context-Free and Counter Languages. DLT 2015: 228-239 - [c18]Joey Eremondi, Oscar H. Ibarra, Ian McQuillan:
Insertion Operations on Deterministic Reversal-Bounded Counter Machines. LATA 2015: 200-211 - [c17]Joey Eremondi, Oscar H. Ibarra, Ian McQuillan:
Deletion Operations on Deterministic Families of Automata. TAMC 2015: 388-399 - [c16]Md. Sowgat Ibne Mahmud, Ian McQuillan:
Simulation of the 2JLP Gene Assembly Process in Ciliates. UCNC 2015: 227-238 - 2014
- [c15]Franziska Biegler, Ian McQuillan:
On Comparing Deterministic Finite Automata and the Shuffle of Words. CIAA 2014: 98-109 - 2013
- [c14]Lingling Jin, Ian McQuillan:
Computational Modelling of the Interruptional Activities between Transposable Elements. TPNC 2013: 108-120 - 2012
- [j17]Ian McQuillan, Giovanni Pighizzini:
Preface. Int. J. Found. Comput. Sci. 23(1) (2012) - [j16]Franziska Biegler, Mark Daley, Ian McQuillan:
Algorithmic decomposition of shuffle on words. Theor. Comput. Sci. 454: 38-50 (2012) - [c13]Markus Holzer, Sebastian Jakobi, Ian McQuillan:
Generalized Derivations with Synchronized Context-Free Grammars. Developments in Language Theory 2012: 109-120 - 2011
- [j15]Mark Daley, Ian McQuillan, James M. McQuillan, Kalpana Mahalingam:
Theoretical and computational properties of transpositions. Nat. Comput. 10(2): 795-804 (2011) - [c12]Jian Zhang, Ian McQuillan, Fang-Xiang Wu:
Parallelizing Peptide-Spectrum scoring using modern graphics processing units. ICCABS 2011: 208-213 - 2010
- [j14]Franziska Biegler, Mark Daley, Ian McQuillan:
On the Shuffle Automaton Size for Words. J. Autom. Lang. Comb. 15(1/2): 53-70 (2010) - [j13]Mark Daley, Ian McQuillan:
Modelling programmed frameshifting with frameshift machines. Nat. Comput. 9(1): 239-261 (2010) - [j12]J. Mark Keil, Jing Liu, Ian McQuillan:
Algorithmic properties of ciliate sequence alignment. Theor. Comput. Sci. 411(6): 919-925 (2010) - [c11]Jian Zhang, Ian McQuillan, Fang-Xiang Wu:
Speed improvements of peptide-spectrum matching using SIMD instructions. BIBM Workshops 2010: 83-88 - [e1]Ian McQuillan, Giovanni Pighizzini:
Proceedings Twelfth Annual Workshop on Descriptional Complexity of Formal Systems, DCFS 2010, Saskatoon, Canada, 8-10th August 2010. EPTCS 31, 2010 [contents]
2000 – 2009
- 2009
- [j11]Helmut Jürgensen, Ian McQuillan:
Homomorphisms Preserving Types of Density. Acta Cybern. 19(2): 499-516 (2009) - [j10]Franziska Biegler, Mark Daley, Markus Holzer, Ian McQuillan:
On the uniqueness of shuffle on words and finite languages. Theor. Comput. Sci. 410(38-40): 3711-3724 (2009) - [c10]Franziska Biegler, Mark Daley, Ian McQuillan:
On the Shuffle Automaton Size for Words. DCFS 2009: 79-89 - 2008
- [j9]Mark Daley, Mark G. Eramian, Ian McQuillan:
The Bag Automaton: A Model of Nondeterministic Storage. J. Autom. Lang. Comb. 13(3/4): 185-206 (2008) - [c9]Helmut Jürgensen, Ian McQuillan:
Homomorphisms Preserving Types of Density. AFL 2008: 183-194 - [c8]Christopher Power, Ian McQuillan, Helen Petrie, Peter Kennaugh, Mark Daley, Geoff Wozniak:
No Going Back: An Interactive Visualization Application for Trailblazing on the Web. IV 2008: 133-142 - 2007
- [j8]Franziska Biegler, Ian McQuillan, Kai Salomaa:
An infinite hierarchy induced by depth synchronization. Theor. Comput. Sci. 387(2): 113-124 (2007) - 2006
- [j7]Mark Daley, Ian McQuillan:
Useful Templates and Iterated Template-Guided DNA Recombination in Ciliates. Theory Comput. Syst. 39(5): 619-633 (2006) - [c7]Ian McQuillan, Kai Salomaa, Mark Daley:
Iterated TGR Languages: Membership Problem and Effective Closure Properties. COCOON 2006: 94-103 - [c6]Franziska Biegler, Ian McQuillan, Kai Salomaa:
An Infinite Hierarchy Induced by Depth Synchronization. DCFS 2006: 82-93 - 2005
- [j6]Mark Daley, Ian McQuillan:
Formal modelling of viral gene compression. Int. J. Found. Comput. Sci. 16(3): 453-469 (2005) - [j5]Mark Daley, Ian McQuillan:
Template-guided DNA recombination. Theor. Comput. Sci. 330(2): 237-250 (2005) - [j4]Ian McQuillan:
The generative capacity of block-synchronized context-free grammars. Theor. Comput. Sci. 337(1-3): 119-133 (2005) - [c5]Mark Daley, Ian McQuillan:
On Computational Properties of Template-Guided DNA Recombination. DNA 2005: 27-37 - 2004
- [j3]Ian McQuillan:
Descriptional Complexity of Block-Synchronization Context-Free Grammars. J. Autom. Lang. Comb. 9(2/3): 317-332 (2004) - [j2]Mark Daley, Lila Kari, Ian McQuillan:
Families of languages defined by ciliate bio-operations. Theor. Comput. Sci. 320(1): 51-69 (2004) - [c4]Mark Daley, Ian McQuillan:
Viral Gene Compression: Complexity and Verification. CIAA 2004: 102-112 - 2003
- [j1]Mark Daley, Oscar H. Ibarra, Lila Kari, Ian McQuillan, Koji Nakano:
The LD and DLAD Bio-Operations on Formal Languages. J. Autom. Lang. Comb. 8(3): 477-498 (2003) - [c3]Mark Daley, Ian McQuillan:
Template-Guided DNA Recombination. DCFS 2003: 235-244 - [c2]Mark Daley, Mark G. Eramian, Ian McQuillan:
Bag Automata and Stochastic Retrieval of Biomolecules in Solution. CIAA 2003: 239-250 - 2002
- [c1]Ian McQuillan:
Descriptional Complexity of Block-Synchronization Context-Free Grammars. DCFS 2002: 188-203
Coauthor Index
[j44] [c48] [i25] [j43] [j42] [c47] [c46] [i23] [c45] [i22] [i21] [i20] [i19] [i18] [i17] [j38] [j37] [j36] [j33] [j32] [c41] [i13] [j31] [j30] [j29] [j28] [j27] [i12] [i11] [i9] [i8] [j26] [j25] [j23] [j22] [j21] [c35] [c34] [c33] [c28] [p1] [j20] [c26] [c25] [i6] [i5] [j18] [c22] [c21] [i3] [i2] [i1] [c20] [c19] [c18] [c17] [j1]
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