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2020 – today
- 2021
[j32]Yingbo Cui
, Zihang Wang, Johannes Köster, Xiangke Liao, Shaoliang Peng, Tao Tang, Chun Huang, Canqun Yang:
VISPR-online: a web-based interactive tool to visualize CRISPR screening experiments. BMC Bioinform. 22(1): 344 (2021)- [j31]Qin Liao, Gang Xiao, Shaoliang Peng:
Performance Improvement of Atmospheric Continuous-Variable Quantum Key Distribution with Untrusted Source. Entropy 23(6): 760 (2021) - [j30]Yingbo Cui, Xiaolong Cheng, Qing Chen, Bicna Song, Anthony Chiu, Yuan Gao, Tyson Dawson, Lumen Chao, Wubing Zhang, Dian Li, Zexiang Zeng, Jijun Yu, Zexu Li, Teng Fei, Shaoliang Peng, Wei Li:
CRISP-view: a database of functional genetic screens spanning multiple phenotypes. Nucleic Acids Res. 49(Database-Issue): D848-D854 (2021) - [i2]Shuting Jin, Xiangxiang Zeng, Wei Huang, Feng Xia, Changzhi Jiang, Xiangrong Liu, Shaoliang Peng:
Heterogeneous network-based drug repurposing for COVID-19. CoRR abs/2107.09217 (2021) - 2020
- [j29]Ying Xu, Cuijuan Yang, Shaoliang Peng, Yusuke Nojima:
A hybrid two-stage financial stock forecasting algorithm based on clustering and ensemble learning. Appl. Intell. 50(11): 3852-3867 (2020) - [j28]Lili Zhang, Xiaoping Wang, Kai Lu, Shaoliang Peng, Xiaodong Wang:
An efficient framework for generating robust adversarial examples. Int. J. Intell. Syst. 35(9): 1433-1449 (2020) - [j27]Wenzhang Zhuge, Chenping Hou, Shaoliang Peng, Dongyun Yi:
Joint consensus and diversity for multi-view semi-supervised classification. Mach. Learn. 109(3): 445-465 (2020) - [j26]Shaoliang Peng, Xiaoyu Zhang, Wenhe Su, Dong Dong, Yutong Lu, Xiangke Liao, Kai Lu, Canqun Yang, Jie Liu, Weiliang Zhu, Dongqing Wei:
High-Scalable Collaborated Parallel Framework for Large-Scale Molecular Dynamic Simulation on Tianhe-2 Supercomputer. IEEE ACM Trans. Comput. Biol. Bioinform. 17(3): 804-816 (2020) - [c47]Dong Chen, Wenjie Shu, Shaoliang Peng:
Predicting CRISPR-Cas9 Off-target with Self-supervised Neural Networks. BIBM 2020: 245-250 - [c46]Yahui Long, Yu Zhang, Min Wu, Shaoliang Peng, Chee Keong Kwoh, Jiawei Luo, Xiaoli Li:
Predicting Drugs for COVID-19/SARS-CoV-2 via Heterogeneous Graph Attention Networks. BIBM 2020: 455-459 - [c45]Xiaoyi Feng, Shaoliang Peng, Fei Li, Ying Xu, Xiangxiang Zeng, Dong-Qing Wei, Yunhao Liu:
A drug information embedding method based on graph convolution neural network. HealthCom 2020: 1-6 - [c44]Jiameng Liu, Shaoliang Peng, Jiawei Luo, Zhuo Tang, Hao Liu:
Segmented Encryption: A Quality and Safety Supervisory Model for Herbal Medicine Based on Blockchain Technology. HealthCom 2020: 1-6 - [c43]Yunhao Liu, Shaoliang Peng, Wenjie Shu, Bin Jiang, Chao Yang, Kun Xie:
Predicting functional elements and variants effects in non-coding regions based on deep learning. HealthCom 2020: 1-6 - [c42]Shaoliang Peng, Liang Bai, Li Xiong, Qiang Qu, Xiaolan Xie, Shulin Wang:
GeoAI-based Epidemic Control with Geo-Social Data Sharing on Blockchain. HealthCom 2020: 1-6 - [c41]Shaoliang Peng, Hao Huang, Minxia Cheng, Yaning Yang, Fei Li:
Efficiently recognition of vaginal micro-ecological environment based on Convolutional Neural Network. HealthCom 2020: 1-6 - [c40]Shaoliang Peng, Xiongjun Zhao, Xiaoyong Wei, Donqing Wei, Yuehua Peng:
Multi-View Weighted Feature Fusion Using CNN for Pneumonia Detection on Chest X-Rays. HealthCom 2020: 1-6 - [c39]Shaoliang Peng, Lei Zhang, Yaning Yang, Wei Liu, Fei Li, Hao Hong, Kenli Li, Shulin Wang:
A deep metric learning algorithm for similarity measure of the gene expression profile. HealthCom 2020: 1-6 - [c38]Di Yang, Chengnian Long, Han Xu, Shaoliang Peng:
A Review on Scalability of Blockchain. ICBCT 2020: 1-6 - [c37]Jiameng Liu, Shaoliang Peng, Chengnian Long, Lijun Wei, Yunhao Liu, Zhihui Tian:
Blockchain for Data Science. ICBCT 2020: 24-28 - [c36]Yaning Yang, Xiaoqi Wang, Shaoliang Peng:
A Dynamic Protection Mechanism for GPU Memory Overflow. NPC 2020: 30-40 - [c35]Dong Chen, Shaoliang Peng, Kenli Li, Ying Xu, Jinling Zhang, Xiaolan Xie:
Re-ranking Answer Selection with Similarity Aggregation. SIGIR 2020: 1677-1680
2010 – 2019
- 2019
- [j25]Gaole An, Jiaqi Sun, Chao Ren, Zhangyi Ouyang, Lingyun Zhu, Xiaochen Bo, Shaoliang Peng, Wenjie Shu:
LIVE: a manually curated encyclopedia of experimentally validated interactions of lncRNAs. Database J. Biol. Databases Curation 2019: baz011 (2019) - [j24]Xinguo Lu, Xin Qian, Xing Li, Qiumai Miao, Shaoliang Peng:
DMCM: a Data-adaptive Mutation Clustering Method to identify cancer-related mutation clusters. Bioinform. 35(3): 389-397 (2019) - [j23]Benyun Shi, Guangliang Liu, Hongjun Qiu, Yu-Wang Chen, Shaoliang Peng:
Voluntary Vaccination through Perceiving Epidemic Severity in Social Networks. Complex. 2019: 3901218:1-3901218:13 (2019) - [j22]Weiwei Lin, Zilong Zhang, Shaoliang Peng:
Academic research trend analysis based on big data technology. Int. J. Comput. Sci. Eng. 20(1): 31-39 (2019) - [j21]Shaoliang Peng, Yingbo Cui, Shunyun Yang, Wenhe Su, Xiaoyu Zhang, Tenglilang Zhang, Weiguo Liu, Xingming Zhao:
A CPU/MIC Collaborated Parallel Framework for GROMACS on Tianhe-2 Supercomputer. IEEE ACM Trans. Comput. Biol. Bioinform. 16(2): 425-433 (2019) - [j20]Tiansheng Huang, Weiwei Lin, Yin Li, Ligang He, Shaoliang Peng:
A Latency-Aware Multiple Data Replicas Placement Strategy for Fog Computing. J. Signal Process. Syst. 91(10): 1191-1204 (2019) - [c34]Qi Niu, Shaoliang Peng, Xiang-Li-Lan Zhang, Shuai Cheng Li, Ying Xu, Xiang-Cheng Xie, Yi-Gang Tong:
LysoPhD: predicting functional prophages in bacterial genomes from high-throughput sequencing. BIBM 2019: 1-5 - [c33]Zhe Sun, Shaoliang Peng, Yaning Yang, Xiaoqi Wang, Fei Li:
A General Fine-tuned Transfer Learning Model for Predicting Clinical Task Acrossing Diverse EHRs Datasets. BIBM 2019: 490-495 - [c32]Xing Hu, Shaoliang Peng, Chengnian Long, Hongbo Jiang, Lijun Wei:
vGuard: A Spatiotemporal Efficiency Supervision Method For Vaccine Production Based On Double-level Blockchain. BIBM 2019: 1037-1042 - [c31]Zekun Yin, Hao Zhang, Kai Xu, Yuandong Chan, Shaoliang Peng, Xiaoning Wang, Bertil Schmidt, Weiguo Liu:
XLCS: A New Bit-Parallel Longest Common Subsequence Algorithm on Xeon Phi Clusters. HPCC/SmartCity/DSS 2019: 1477-1483 - 2018
- [j19]Shunyun Yang, Runxin Guo, Rui Liu, Xiangke Liao, Quan Zou, Benyun Shi, Shaoliang Peng:
cmFSM: a scalable CPU-MIC coordinated drug-finding tool by frequent subgraph mining. BMC Bioinform. 19-S(4): 35-47 (2018) - [j18]Shaoliang Peng, Minxia Cheng, Kaiwen Huang, Yingbo Cui, Zhiqiang Zhang, Runxin Guo, Xiaoyu Zhang, Shunyun Yang, Xiangke Liao, Yutong Lu, Quan Zou, Benyun Shi:
Efficient computation of motif discovery on Intel Many Integrated Core (MIC) Architecture. BMC Bioinform. 19-S(9): 185-194 (2018) - [j17]Yingbo Cui, Shaoliang Peng, Yutong Lu, Xiaoqian Zhu, Bingqiang Wang, Chengkun Wu, Xiangke Liao:
mSNP: A Massively Parallel Algorithm for Large-Scale SNP Detection. IEEE Trans. Parallel Distributed Syst. 29(11): 2557-2567 (2018) - [j16]Shanshan Li, Wang Li, Xiangke Liao, Shaoliang Peng, Shulin Zhou, Zhouyang Jia, Teng Wang:
ConfVD: System Reactions Analysis and Evaluation Through Misconfiguration Injection. IEEE Trans. Reliab. 67(4): 1393-1405 (2018) - 2017
- [j15]Shaoliang Peng, Shunyun Yang, Ming Gao, Xiangke Liao, Jie Liu, Canqun Yang, Chengkun Wu, Wenqiang Yu:
P-Hint-Hunt: a deep parallelized whole genome DNA methylation detection tool. BMC Genom. 18(S2) (2017) - [j14]Wenhe Su, Xiangke Liao, Yutong Lu, Quan Zou, Shaoliang Peng:
Multiple Sequence Alignment Based on a Suffix Tree and Center-Star Strategy: A Linear Method for Multiple Nucleotide Sequence Alignment on Spark Parallel Framework. J. Comput. Biol. 24(12): 1230-1242 (2017) - [c30]Xiaoyu Zhang, Xiangke Liao, Hao Zhu, Kenli Li, Benyun Shi, Shaoliang Peng:
A novel algorithm for detecting co-evolutionary domains in protein and nucleotide sequences. BIBM 2017: 56-61 - [c29]Shaoliang Peng, Xiaoyu Zhang, Shunyun Yang, Wenhe Su, Zhiqiang Zhang, Dong Dong, Kai Lu, Yutong Lu, Xiangke Liao, Bertil Schmidt, Weiliang Zhu, Kuan-Ching Li:
mD3DOCKxb: An Ultra-Scalable CPU-MIC Coordinated Virtual Screening Framework. CCGrid 2017: 671-676 - 2016
- [j13]Haidong Lan, Yuandong Chan, Kai Xu, Bertil Schmidt, Shaoliang Peng, Weiguo Liu:
Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters. BMC Bioinform. 17(S-9): 267 (2016) - [c28]Shaoliang Peng:
High performance computational biology and drug design on TianHe Supercomputers. BIBM 2016: 7 - [c27]Shaoliang Peng, Xiaoyu Zhang, Yutong Lu, Xiangke Liao, Kai Lu, Canqun Yang, Jie Liu, Weiliang Zhu, Dongqing Wei:
mAMBER: A CPU/MIC collaborated parallel framework for AMBER on Tianhe-2 supercomputer. BIBM 2016: 651-657 - [e2]Wanxiang Che, Qilong Han, Hongzhi Wang, Weipeng Jing, Shaoliang Peng, Junyu Lin, Guanglu Sun, Xianhua Song, Hongtao Song, Zeguang Lu:
Social Computing - Second International Conference of Young Computer Scientists, Engineers and Educators, ICYCSEE 2016, Harbin, China, August 20-22, 2016, Proceedings, Part I. Communications in Computer and Information Science 623, Springer 2016, ISBN 978-981-10-2052-0 [contents] - [e1]Wanxiang Che, Qilong Han, Hongzhi Wang, Weipeng Jing, Shaoliang Peng, Junyu Lin, Guanglu Sun, Xianhua Song, Hongtao Song, Zeguang Lu:
Social Computing - Second International Conference of Young Computer Scientists, Engineers and Educators, ICYCSEE 2016, Harbin, China, August 20-22, 2016, Proceedings, Part II. Communications in Computer and Information Science 624, Springer 2016, ISBN 978-981-10-2097-1 [contents] - 2015
- [j12]Ruibang Luo, Jeanno Cheung, Edward Wu, Heng Wang, Sze-Hang Chan, Wai-Chun Law, Guangzhu He, Chang Yu, Chi-Man Liu, Dazong Zhou, Yingrui Li, Ruiqiang Li, Jun Wang, Xiaoqian Zhu, Shaoliang Peng, Tak Wah Lam:
MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC). BMC Bioinform. 16(S-7): S10 (2015) - [j11]Jing Zhang, Shanshan Li, Xiangke Liao, Shaoliang Peng, Xiaodong Liu, Zhouyang Jia:
HeMatch: A redundancy layout placement scheme for erasure-coded storages in practical heterogeneous failure patterns. Sci. China Inf. Sci. 58(6): 1-11 (2015) - [j10]Ettore Murabito, Riccardo Colombo, Chengkun Wu, Malkhey Verma, Samrina Rehman, Jacky L. Snoep, Shaoliang Peng, Naiyang Guan, Xiangke Liao, Hans V. Westerhoff:
SupraBiology 2014: Promoting UK-China collaboration on Systems Biology and High Performance Computing. Quant. Biol. 3(1): 46-53 (2015) - [j9]Xiangke Liao, Shaoliang Peng, Yutong Lu, Yingbo Cui, Chengkun Wu, Heng Wang, Jiajun Wen:
Neo-hetergeneous Programming and Parallelized Optimization of a Human Genome Re-sequencing Analysis Software Pipeline on TH-2 Supercomputer. Supercomput. Front. Innov. 2(1): 73-83 (2015) - [c26]Qian Cheng, Shaoliang Peng, Yutong Lu, Weiliang Zhu, Zhijian Xu, Xinben Zhang:
mD3DOCKxb: A Deep Parallel Optimized Software for Molecular Docking with Intel Xeon Phi Coprocessors. CCGRID 2015: 725-728 - [c25]Xin Liu, Shaoliang Peng, Canqun Yang, Chengkun Wu, Haiqiang Wang, Qian Cheng, Weiliang Zhu, Jinan Wang:
mAMBER: Accelerating Explicit Solvent Molecular Dynamic with Intel Xeon Phi Many-Integrated Core Coprocessors. CCGRID 2015: 729-732 - [c24]Haiqiang Wang, Shaoliang Peng, Xiaoqian Zhu, Chengkun Wu, Xin Liu, Qian Chen, Weiliang Zhu, Jinan Wang, Huaiyu Yang:
A Method to Accelerate GROMACS in Offload Mode on Tianhe-2 Supercomputer. CCGRID 2015: 781-784 - [c23]Shaoliang Peng, Xiangke Liao, Canqun Yang, Yutong Lu, Jie Liu, Yingbo Cui, Heng Wang, Chengkun Wu, Bingqiang Wang:
The Challenge of Scaling Genome Big Data Analysis Software on TH-2 Supercomputer. CCGRID 2015: 823-828 - [c22]Yingbo Cui, Xiangke Liao, Shaoliang Peng, Yutong Lu, Canqun Yang, Bingqiang Wang, Chengkun Wu:
Large-Scale Neo-Heterogeneous Programming and Optimization of SNP Detection on Tianhe-2. ISC 2015: 74-86 - [c21]Heng Wang, Shaoliang Peng, Yutong Lu, Chengkun Wu, Jiajun Wen, Jie Liu, Xiaoqian Zhu:
BWTCP: A Parallel Method for Constructing BWT in Large Collection of Genomic Reads. ISC 2015: 171-178 - 2014
- [j8]Xiaodong Liu, Mo Li, Shanshan Li, Shaoliang Peng, Xiangke Liao, Xiaopei Lu:
IMGPU: GPU-Accelerated Influence Maximization in Large-Scale Social Networks. IEEE Trans. Parallel Distributed Syst. 25(1): 136-145 (2014) - [j7]Xiaodong Liu, Shanshan Li, Xiangke Liao, Shaoliang Peng, Lei Wang, Zhiyin Kong:
Know by a handful the whole sack: efficient sampling for top-k influential user identification in large graphs. World Wide Web 17(4): 627-647 (2014) - [c20]Yingbo Cui, Xiangke Liao, Xiaoqian Zhu, Bingqiang Wang, Shaoliang Peng:
mBWA: A Massively Parallel Sequence Reads Aligner. PACBB 2014: 113-120 - [i1]Sze-Hang Chan, Jeanno Cheung, Edward Wu, Heng Wang, Chi-Man Liu, Xiaoqian Zhu, Shaoliang Peng, Ruibang Luo, Tak Wah Lam:
MICA: A fast short-read aligner that takes full advantage of Intel Many Integrated Core Architecture (MIC). CoRR abs/1402.4876 (2014) - 2013
- [j6]Shanshan Li, Shaoliang Peng, Weifeng Chen, Xiaopei Lu:
INCOME: Practical land monitoring in precision agriculture with sensor networks. Comput. Commun. 36(4): 459-467 (2013) - [c19]He Huang, Xiangke Liao, Shanshan Li, Shaoliang Peng, Xiaodong Liu, Bin Lin:
The architecture and traffic management of wireless collaborated hybrid data center network. SIGCOMM 2013: 511-512 - 2012
- [j5]Shaoliang Peng, Shanshan Li, Xiangke Liao, Yuxing Peng, Nong Xiao:
A scalable code dissemination protocol in heterogeneous wireless sensor networks. Sci. China Inf. Sci. 55(6): 1323-1336 (2012) - [j4]Shaoliang Peng, Guoliang Xing, Shanshan Li, Weijia Jia, Yuxing Peng:
Fast Release/Capture Sampling in Large-Scale Sensor Networks. IEEE Trans. Mob. Comput. 11(8): 1274-1286 (2012) - [c18]Buquan Liu, Yiping Yao, Zhiwen Jiang, Laibin Yan, Qingjun Qu, Shaoliang Peng:
HLA-Based Parallel Simulation: A Case Study. PADS 2012: 65-67 - 2011
- [c17]Li-li Chen, Ya-Shuai Lü, Yi-Ping Yao, Shaoliang Peng, Ling-Da Wu:
A Well-Balanced Time Warp System on Multi-Core Environments. PADS 2011: 1-9 - [c16]Bonan Hou, Yiping Yao, Shaoliang Peng:
Empirical Study on Entity Interaction Graph of Large-Scale Parallel Simulations. PADS 2011: 1-6 - 2010
- [c15]Shanshan Li, Si Zheng, Xiangke Liao, Shaoliang Peng:
Exploring the practicability of mobile sensors in complex environment surveillance. IWQoS 2010: 1-2 - [c14]Zhiqiang Liu, Junqiang Song, Shaoliang Peng:
MPIActor: A thread-based MPI program accelerator. IWQoS 2010: 1-2 - [c13]Shaoliang Peng, Guoliang Xing, Shanshan Li, Weijia Jia, Yuxing Peng:
Fish a lake: Fast release/capture sampling in large-scale sensor networks. IWQoS 2010: 1-8
2000 – 2009
- 2009
- [j3]Shaoliang Peng, Shanshan Li, Xiangke Liao, Yuxing Peng, Nong Xiao:
Estimation of a Population Size in Large-Scale Wireless Sensor Networks. J. Comput. Sci. Technol. 24(5): 987-997 (2009) - [j2]Shaoliang Peng, Guoliang Xing, Shanshan Li, Weijia Jia, Yuxing Peng:
Fast summation via sampling in large-scale sensor networks. ACM SIGMOBILE Mob. Comput. Commun. Rev. 13(1): 40-43 (2009) - [c12]Gang Liu, Yiping Yao, Shaoliang Peng:
EDEVS : A Scalable DEVS Formalism for Event-Scheduling Based Parallel and Distributed Simulations. DS-RT 2009: 239-242 - 2008
- [j1]Shaoliang Peng, Shanshan Li, Lei Chen, Yuxing Peng, Nong Xiao:
Scalable Base-Station Model-Based Multicast in Wireless Sensor Networks. J. Comput. Sci. Technol. 23(5): 780-791 (2008) - [c11]Shaoliang Peng, Shanshan Li, Lei Chen, Nong Xiao, Yuxing Peng:
SenCast: Scalable multicast in wireless sensor networks. IPDPS 2008: 1-9 - [c10]Changxiang Shen, Wei-Fang Cheng, Xiangke Liao, Shaoliang Peng:
Barrier Coverage with Mobile Sensors. ISPAN 2008: 99-104 - [c9]Shanshan Li, Shaoliang Peng, Mo Li, Xiangke Liao:
Using cable-based mobile sensors to assist environment surveillance. MASS 2008: 521-522 - 2007
- [c8]Shaoliang Peng, Shanshan Li, Yuxing Peng, Peidong Zhu, Nong Xiao:
A Delay Sensitive Feedback Control Data Aggregation Approach in Wireless Sensor Network. International Conference on Computational Science (4) 2007: 393-400 - [c7]Shanshan Li, Shaoliang Peng, Xiangke Liao, Peidong Zhu, Yuxing Peng:
A Framework for Congestion Control for Reliable Data Delivery in Wireless Sensor Networks. Integrated Network Management 2007: 793-796 - [c6]Shanshan Li, Xiangke Liao, Shaoliang Peng, Peidong Zhu, Jie Jiang:
Credit based Fairness Control in Wireless Sensor Network. SNPD (1) 2007: 817-822 - [c5]Shaoliang Peng, Shanshan Li, Yuxing Peng, Wen-sheng Tang, Nong Xiao:
Real-Time Data Delivery in Wireless Sensor Networks: A Data-Aggregated, Cluster-Based Adaptive Approach. UIC 2007: 514-523 - 2006
- [c4]Shanshan Li, Peidong Zhu, Xiangke Liao, Wei-Fang Cheng, Shaoliang Peng:
Energy Efficient Multipath Routing Using Network Coding in Wireless Sensor Networks. ADHOC-NOW 2006: 114-127 - [c3]Shaoliang Peng, Shanshan Li, Xiangke Liao, Yuxing Peng, Ye Hui:
Feedback Control with Prediction for Thread Allocation in Pipeline Architecture Web Server. ICDCN 2006: 454-465 - [c2]Xiangke Liao, Shanshan Li, Peidong Zhu, Shaoliang Peng, Wei-Fang Cheng, Dezun Dong:
Path Selection of Reliable Data Delivery in Wireless Sensor Networks. WASA 2006: 163-174 - [c1]Wei-Fang Cheng, Xiangke Liao, Changxiang Shen, Shanshan Li, Shaoliang Peng:
A Trust-Based Routing Framework in Energy-Constrained Wireless Sensor Networks. WASA 2006: 478-489
Coauthor Index
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