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ORCIDJournal of Open Source Software, Volume 9
Volume 9, Number 93, January 2024
- Ritam Raha
, Rajarshi Roy, Nathanaël Fijalkow, Daniel Neider:
Scarlet: Scalable Anytime Algorithms for Learning Fragments of Linear Temporal Logic. 5052 - Tuomas Eerola, Martin Clayton:
onsetsync: An R Package for Onset Synchrony Analysis. 5395 - Quentin Batista, Chase Coleman, Yuya Furusawa, Shu Hu, Smit Lunagariya, Spencer Lyon, Matthew McKay, Daisuke Oyama, Thomas J. Sargent, Zejin Shi, John Stachurski, Pablo Winant, Natasha Watkins, Ziyue Yang, Hengcheng Zhang:
QuantEcon.py: A community based Python library for quantitative economics. 5585 - Jessica Otis, James Safley, Megan Brett, Lincoln Mullen:
DataScribe: An Omeka S module for structured data transcription. 5661 - Maria Gargiulo, María J. Durán, Paula Andrea Amado, Patrick Ball:
verdata: An R package for analyzing data from the Truth Commission in Colombia. 5844 - Pablo Timoner, Fleur Hierink, Loïc Baecher, Caroline Fuhrer, Nicolas Ray:
inAccessMod: An R package to automate data downloading and processing for AccessMod. 5879 - Vivek Joshy:
OpenSkill: A faster asymmetric multi-team, multiplayer rating system. 5901 - Guilherme P. Castelão, Luiz Irber:
Gibbs Sea Water Oceanographic Toolbox of TEOS-10 implemented in Rust. 5988 - Andrew S. Rosen, Max Gallant, Janine George, Janosh Riebesell, Hrushikesh Sahasrabuddhe, Jimmy-Xuan Shen, Mingjian Wen, Matthew L. Evans, Guido Petretto, David Waroquiers, Gian-Marco Rignanese, Kristin A. Persson, Anubhav Jain, Alex M. Ganose:
Jobflow: Computational Workflows Made Simple. 5995 - Matthew Kuperus Heun, Zeke Marshall, Emmanuel Aramendia:
CLPFUDatabase: A suite of R packages for energy conversion chain analysis. 6057 - Niclas Rieger, Samuel J. Levang:
xeofs: Comprehensive EOF analysis in Python with xarray. 6060 - Matthias Mayr, Julian M. Salt Ducaju:
A C++ Implementation of a Cartesian Impedance Controller for Robotic Manipulators. 5194 - K. J. Schmidt, Aristana Scourtas, Logan T. Ward, Steve Wangen, Marcus Schwarting, Isaac Darling, Ethan Truelove, Aadit Ambadkar, Ribhav Bose, Zoa Katok, Jingrui Wei, Xiangguo Li, Ryan Jacobs, Lane Schultz, Doyeon Kim, Michael C. Ferris, Paul M. Voyles, Dane Morgan, Ian T. Foster, Ben Blaiszik:
Foundry-ML - Software and Services to Simplify Access to Machine Learning Datasets in Materials Science. 5467 - Lisa Buchauer, Shalev Itzkovitz:
cellanneal: A user-friendly deconvolution software for transcriptomics data. 5610 - Ian Hunt-Isaak, John Russell, Doeke Hekstra:
mpl-interactions: A Python Package for Interactive Matplotlib Figures. 5651 - Petr Grigorev, Lucas Frérot, Fraser Birks, Adrien Gola, Jacek Golebiowski, Jan Grießer, Johannes L. Hörmann, Andreas Klemenz, Gianpietro Moras, Wolfram G. Nöhring, Jonas A. Oldenstaedt, Punit Patel, Thomas Reichenbach, Thomas Rocke, Lakshmi Shenoy, Michael Walter, Simon Wengert, Lei Zhang, James R. Kermode, Lars Pastewka:
matscipy: materials science at the atomic scale with Python. 5668 - Thomas R. Else, Janek Gröhl, Lina Hacker, Sarah E. Bohndiek:
PATATO: a Python photoacoustic tomography analysis toolkit. 5686
Volume 9, Number 94, February 2024
- Peerasait Prachaseree, Saeed Mohammadzadeh, Berkin Dortdivanlioglu, Emma Lejeune:
FEniCS-arclength: A numerical continuation package in FEniCS for nonlinear problems in solid mechanics. 5727 - Marc Hirschvogel:
Ambit - A FEniCS-based cardiovascular multi-physics solver. 5744 - Pietro Sperotto, M. Ratz, Miguel A. Mendez:
SPICY: a Python toolbox for meshless assimilation from image velocimetry using radial basis functions. 5749 - Baptiste Delaporte, Thomas Arsouze, Gunnar Keppel, Swen Jullien, Christophe Menkes, Thomas Ibanez:
StormR: An R package to quantify and map the tropical storms and cyclones' winds characteristics. 5766 - David Malaspina, Jordi Faraudo:
Chitin Builder: a VMD tool for the generation of structures of chitin molecular crystals for atomistic simulations. 5771 - Coy J. Zimmermann, Keith B. Neeves, David W. M. Marr:
MicroTracker.jl: A Julia package for microbot research. 5804 - Alejandro José Uría-Álvarez, Juan José Palacios:
tightbinder: A Python package for semi-empirical tight-binding models of crystalline and disordered solids. 5810 - Johanna Casado, Gonzalo de la Vega, Beatriz García:
SonoUno development: a User-Centered Sonification software for data analysis. 5819 - Ziheng 'Leo' Li, Haowen 'John' Wei, Ziwen Xie, Yunxiang Peng, June Pyo Suh, Steven Feiner, Paul Sajda:
PhysioLabXR: A Python Platform for Real-Time, Multi-modal, Brain-Computer Interfaces and Extended Reality Experiments. 5854 - Nicodemo Di Pasquale, Ruslan L. Davidchack, Lorenzo Rovigatti:
CLEAVING: a LAMMPS package to compute surface free energies. 5886 - Julian Müller:
netroles: A Java library for role equivalence analysis in networks. 5903 - David Augustin:
Chi: A Python package for treatment response modelling. 5925 - Jimmy-Xuan Shen, Joel Varley:
pymatgen-analysis-defects: A Python package for analyzing point defects in crystalline materials. 5941 - Kleydson Stenio, Débora Marcondes Bastos Pereira Milori:
LIBSsa: an open source software for analyzing LIBS spectra. 5961 - Victor Alves, San Dinh, John R. Kitchin, Vitor Gazzaneo, Juan C. Carrasco, Fernando V. Lima:
Opyrability: A Python package for process operability analysis. 5966 - George Bouras, Susanna R. Grigson, Bhavya Nalagampalli Papudeshi, Vijini Mallawaarachchi, Michael J. Roach:
Dnaapler: A tool to reorient circular microbial genomes. 5968 - Clémence Réda, Jill-Jênn Vie, Olaf Wolkenhauer:
stanscofi and benchscofi: a new standard for drug repurposing by collaborative filtering. 5973 - Bonan Zhu, Seán R. Kavanagh, David O. Scanlon:
easyunfold: A Python package for unfolding electronic band structures. 5974 - Reid A. Johnson:
quantile-forest: A Python Package for Quantile Regression Forests. 5976 - Daniel Lerch-Hostalot, David Megías:
Aletheia: an open-source toolbox for steganalysis. 5982 - Brendan Collins, Ryan Beams, Miguel A. Lago:
Open-Source Pattern Creation Tool for Medical Extended Reality Image Quality Assessment. 6021 - Junta Tagusari:
H-RISK with NoiseModelling: a QGIS plugin to predict environmental noise and estimate health risks. 6023 - Jean-Baptiste Féret, Florian de Boissieu:
prospect: an R package to link leaf optical properties with their chemical and structural properties with the leaf model PROSPECT. 6027 - Lee S. Katz, John Phan, Henk C. den Bakker:
Fasten: a toolkit for streaming operations on fastq files. 6030 - Taha Zerrouki:
Tashaphyne: A Python package for Arabic Light Stemming. 6063 - Akihiro Kuno:
cstag and cstag-cli: tools for manipulating and visualizing cs tags. 6066 - Vikram Ramavarapu, Fabio Jose Ayres, Minhyuk Park, Vidya Kamath Pailodi, João Alfredo Cardoso Lamy, Tandy J. Warnow, George Chacko:
CM++ - A Meta-method for Well-Connected Community Detection. 6073 - Jake Langham, Mark J. Woodhouse:
The Kestrel software for simulations of morphodynamic Earth-surface flows. 6079 - Robrecht Cannoodt, Hendrik Cannoodt, Dries Schaumont, Kai Waldrant, Eric Van de Kerckhove, Andy Boschmans, Dries De Maeyer, Toni Verbeiren:
Viash: A meta-framework for building reusable workflow modules. 6089 - Yann Georg Büchau, Hasan Mashni, Matteo Bramati, Vasileios Savvakis, Ines Schäfer, Saskia Jung, Gabriela Miranda-Garcia, Daniel Hardt, Jens Bange:
PARMESAN: Meteorological Timeseries and Turbulence Analysis Backed by Symbolic Mathematics. 6127 - Florian Knoop, Nina Shulumba, Aloïs Castellano, J. P. Alvarinhas Batista, Roberta Farris, Matthieu J. Verstraete, Matthew Heine, David Broido, Dennis S. Kim, Johan Klarbring, Igor A. Abrikosov, Sergei I. Simak, Olle Hellman:
TDEP: Temperature Dependent Effective Potentials. 6150 - Mark W. Isken, Jacob W. Norman:
hillmaker: A Python package for occupancy analysis in discrete entity flow systems. 6154 - David Frank, Jonas Jelten, Tobias Lasser:
elsa: an elegant framework for tomographic reconstruction. 6174 - Max Weiner, Christoph Renzing, Max Stirl, Matthias Schmidtchen, Ulrich Prahl:
PyRolL - An Extensible OpenSource Framework for Rolling Simulation. 6200 - Joel H. Nitta, Wataru Iwasaki:
dwctaxon, an R package for editing and validating taxonomic data in Darwin Core format. 6215 - Mohamed Masoud, David A. Gutman, Sergey M. Plis:
HistoJS: Web-Based Analytical Tool for Advancing Multiplexed Images. 6317
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