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Vijini Mallawaarachchi
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2020 – today
- 2024
- [j12]George Bouras
, Susanna R. Grigson
, Bhavya Nalagampalli Papudeshi, Vijini Mallawaarachchi
, Michael J. Roach
:
Dnaapler: A tool to reorient circular microbial genomes. J. Open Source Softw. 9(94): 5968 (2024) - [j11]Michael J. Roach
, Bradley J. Hart
, Sarah J. Beecroft
, Bhavya Nalagampalli Papudeshi, Laura K. Inglis
, Susanna R. Grigson
, Vijini Mallawaarachchi
, George Bouras
, Robert A. Edwards
:
Koverage: Read-coverage analysis for massive (meta)genomics datasets. J. Open Source Softw. 9(96): 6235 (2024) - [c8]Hansheng Xue, Vijini Mallawaarachchi, Lexing Xie, Vaibhav Rajan:
Encoding Unitig-level Assembly Graphs with Heterophilous Constraints for Metagenomic Contigs Binning. ICLR 2024 - 2023
- [j10]Vijini Mallawaarachchi
, Michael J. Roach
, Przemyslaw Decewicz
, Bhavya Nalagampalli Papudeshi, Sarah K. Giles, Susanna R. Grigson
, George Bouras
, Ryan D. Hesse
, Laura K. Inglis
, Abbey L. K. Hutton, Elizabeth A. Dinsdale
, Robert A. Edwards
:
Phables: from fragmented assemblies to high-quality bacteriophage genomes. Bioinform. 39(10) (2023) - 2022
- [j9]Sunera Chandrasiri, Thumula Perera, Anjala Dilhara, Indika Perera, Vijini Mallawaarachchi
:
CH-Bin: A convex hull based approach for binning metagenomic contigs. Comput. Biol. Chem. 100: 107734 (2022) - [j8]Vijini Mallawaarachchi
, Yu Lin:
Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs. J. Comput. Biol. 29(12): 1357-1376 (2022) - [j7]Michael J. Roach
, N. Tessa Pierce-Ward
, Radoslaw Suchecki, Vijini Mallawaarachchi
, Bhavya Nalagampalli Papudeshi, Scott A. Handley, C. Titus Brown, Nathan S. Watson-Haigh
, Robert A. Edwards
:
Ten simple rules and a template for creating workflows-as-applications. PLoS Comput. Biol. 18(12): 1010705 (2022) - [c7]Hansheng Xue, Vijini Mallawaarachchi
, Yujia Zhang, Vaibhav Rajan, Yu Lin:
RepBin: Constraint-Based Graph Representation Learning for Metagenomic Binning. AAAI 2022: 4637-4645 - [c6]Vijini Mallawaarachchi
, Yu Lin
:
MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs. RECOMB 2022: 70-85 - 2021
- [j6]Vijini Mallawaarachchi
, Anuradha Wickramarachchi, Yu Lin:
Improving metagenomic binning results with overlapped bins using assembly graphs. Algorithms Mol. Biol. 16(1): 3 (2021) - [j5]Vijini Mallawaarachchi
, Lakmal Meegahapola
, Roshan Madhushanka, Eranga Heshan, Dulani Meedeniya
, Sampath Jayarathna:
Change Detection and Notification of Web Pages: A Survey. ACM Comput. Surv. 53(1): 15:1-15:35 (2021) - [i2]Hansheng Xue, Vijini Mallawaarachchi, Yujia Zhang, Vaibhav Rajan, Yu Lin:
RepBin: Constraint-based Graph Representation Learning for Metagenomic Binning. CoRR abs/2112.11696 (2021) - 2020
- [j4]Vijini Mallawaarachchi
, Anuradha Wickramarachchi, Yu Lin
:
GraphBin: refined binning of metagenomic contigs using assembly graphs. Bioinform. 36(11): 3307-3313 (2020) - [j3]Anuradha Wickramarachchi, Vijini Mallawaarachchi
, Vaibhav Rajan, Yu Lin
:
MetaBCC-LR: metagenomics binning by coverage and composition for long reads. Bioinform. 36(Supplement-1): i3-i11 (2020) - [j2]Gihan Gamage, Nadeeshan Gimhana
, Indika Perera, Shanaka Bandara, Thilina Pathirana, Anuradha Wickramarachchi, Vijini Mallawaarachchi
:
Phylogenetic Tree Construction Using K-Mer Forest- Based Distance Calculation. Int. J. Online Biomed. Eng. 16(7): 4-20 (2020) - [c5]Vijini Mallawaarachchi
, Anuradha Wickramarachchi
, Yu Lin
:
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs. WABI 2020: 8:1-8:21
2010 – 2019
- 2019
- [i1]Vijini Mallawaarachchi, Lakmal Meegahapola, Roshan Alwis, Eranga Nimalarathna, Dulani Meedeniya, Sampath Jayarathna:
Change Detection and Notification of Webpages: A Survey. CoRR abs/1901.02660 (2019) - 2018
- [j1]Vijini Mallawaarachchi
, Anuradha Wickaramarachchi, Anuradha Weliwita, Indika Perera
, Dulani Meedeniya
:
Experiential Learning in Bioinformatics - Learner Support for Complex Workflow Modelling and Analysis. Int. J. Emerg. Technol. Learn. 13(12): 19-34 (2018) - [c4]Vijini Mallawaarachchi
, Anuradha Wickramarachchi, Anuradha Welivita, Indika Perera
, Dulani Meedeniya
:
Efficient Bioinformatics Computations through GPU Accelerated Web Services. ICACS 2018: 94-98 - [c3]Lakmal Meegahapola
, Vijini Mallawaarachchi
, Roshan Alwis, Eranga Nimalarathna, Dulani Meedeniya
, Sampath Jayarathna:
Random Forest Classifier based Scheduler Optimization for Search Engine Web Crawlers. ICSCA 2018: 285-289 - [c2]Anuradha Wickramarachchi, Vijini Mallawaarachchi
, Dulani Meedeniya
, Indika Perera
, Anuradha Welivita:
Enhanced Student Learning in Proteomics - an Interactive Tool Support for Teaching Workflows. TALE 2018: 228-235 - 2017
- [c1]Lakmal Meegahapola
, Roshan Alwis, Eranga Nimalarathna, Vijini Mallawaarachchi
, Dulani Meedeniya
, Sampath Jayarathna:
Optimizing change detection in distributed digital collections: An architectural perspective of change detection. SNPD 2017: 277-282
Coauthor Index
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last updated on 2024-08-08 20:12 CEST by the dblp team
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