BMC Bioinformatics, Volume 10 - Supplements
Volume 10, Number S-1, 2009
Selected papers from the Seventh Asia-Pacific Bioinformatics Conference (APBC 2009)
G. X. Yu
: Pathogenic Bacillus anthracis in the progressive gene losses and gains in adaptive evolution.
: Sorting by reversals, block interchanges, tandem duplications, and deletions.
: DNA motif alignment by evolving a population of Markov chains.
Brian J. Parker
, Jiayu Wen
: Predicting microRNA targets in time-series microarray experiments via functional data analysis.
, Zhangjun Fei
: Computational identification of condition-specific miRNA targets based on gene expression profiles and sequence information.
, Jing He
: Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures.
Thai Quang Tung
, Doheon Lee
: A method to improve protein subcellular localization prediction by integrating various biological data sources.
, Wei Jia
, Zhuang Lu
, Haipeng Wang
, Zuofei Yuan
, Hao Chi
, You Li
, Liyun Xiu
, Wenping Wang
, Chao Liu
, Leheng Wang
, Ruixiang Sun
, Wen Gao
, Xiaohong Qian
, Simin He
: Efficient discovery of abundant post-translational modifications and spectral pairs using peptide mass and retention time differences.
: Semi-supervised gene shaving method for predicting low variation biological pathways from genome-wide data.
Gunnar W. Klau
: A new graph-based method for pairwise global network alignment.
, Xiao Sun
, Shihai Yu
: Genome-scale analysis to the impact of gene deletion on the metabolism of E. coli: constraint-based simulation approach.
, Guangcheng Xi
: An unsupervised partition method based on association delineated revised mutual information.
, Krzysztof Walczak
: A new classification method using array Comparative Genome Hybridization data, based on the concept of Limited Jumping Emerging Patterns.
Volume 10, Number S-2, 2009
Selected Proceedings of the First Summit on Translational Bioinformatics 2008
, Russ B. Altman
: Pharmspresso: a text mining tool for extraction of pharmacogenomic concepts and relationships from full text.
Volume 10, Number S-3, 2009
Second International Workshop on Data and Text Mining in Bioinformatics (DTMBio) 2008
, Xiaoqiu Huang
: Pairwise statistical significance of local sequence alignment using multiple parameter sets and empirical justification of parameter set change penalty.
, Doheon Lee
: Mining metastasis related genes by primary-secondary tumor comparisons from large-scale databases.
Volume 10, Number S-4, 2009
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine (BIBM) 2008
Jung Hun Oh
, Jean Gao
: A kernel-based approach for detecting outliers of high-dimensional biological data.
Volume 10, Number S-5, 2009
Proceedings of the Bio-Ontologies Special Interest Group Workshop 2008:
Knowledge in Biology
Volume 10, Number S-6, 2009
European Molecular Biology Network (EMBnet) Conference 2008:
20th Anniversary Celebration. Leading applications and technologies in bioinformatics
Volume 10, Number S-7, 2009
UT-ORNL-KBRIN Bioinformatics Summit 2009
: Parallelized pairwise sequence alignment using CUDA on multiple GPUs.