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2020 – today
- 2024
[c24]Sakhawat Hossain Saimon
, Tanzira Najnin, Jianhua Ruan:
A Novel Feature Space Augmentation Method to Improve Classification Performance and Evaluation Reliability. KDD 2024: 2512-2523- 2022
- [j24]Nahim Adnan, Maryam Zand, Tim Hui-Ming Huang, Jianhua Ruan:
Construction and Evaluation of Robust Interpretation Models for Breast Cancer Metastasis Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 19(3): 1344-1353 (2022) - 2020
- [j23]Nahim Adnan, Chengwei Lei, Jianhua Ruan:
Robust edge-based biomarker discovery improves prediction of breast cancer metastasis. BMC Bioinform. 21-S(14): 359 (2020)
2010 – 2019
- 2019
- [c23]Zhen Gao, Maryam Zand, Jianhua Ruan:
A Novel Multiple Classifier Generation and Combination Framework Based on Fuzzy Clustering and Individualized Ensemble Construction. DSAA 2019: 231-240 - [c22]Yu Yin, Shuai An, Jun Wang, Jinmao Wei, Jianhua Ruan:
Probabilistic Margin-Aware Multi-Label Feature Selection by Preserving Spatial Consistency. IJCNN 2019: 1-8 - [i1]Zhen Gao, Maryam Zand, Jianhua Ruan:
A Novel Multiple Classifier Generation and Combination Framework Based on Fuzzy Clustering and Individualized Ensemble Construction. CoRR abs/1907.13353 (2019) - 2018
- [j22]Xiaoming Liu, Lei Xie, Zhijin Wu, Kai Wang, Zhongming Zhao, Jianhua Ruan, Degui Zhi:
The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: bioinformatics towards translational applications. BMC Bioinform. 19-S(17): 492:1-492:3 (2018) - [c21]Yuanyuan Xu, Jun Wang, Shuai An, Jinmao Wei, Jianhua Ruan:
Semi-Supervised Multi-Label Feature Selection by Preserving Feature-Label Space Consistency. CIKM 2018: 783-792 - [c20]Maryam Zand, Zhen Gao, Jinmao Wei, Garry Sunter, Jianhua Ruan:
An integrative approach to transcriptional co-regulatory network construction and characterization in Arabidopsis. ICCABS 2018: 1-6 - [c19]Hengpeng Xu, Jinmao Wei, Zhenglu Yang, Jianhua Ruan, Jun Wang:
Probabilistic Topic and Role Model for Information Diffusion in Social Network. PAKDD (2) 2018: 3-15 - [c18]Xuemeng Jiang, Jun Wang, Jinmao Wei, Jianhua Ruan, Gang Yu:
ANNC: AUC-Based Feature Selection by Maximizing Nearest Neighbor Complementarity. PRICAI (1) 2018: 772-785 - 2017
- [j21]Zhen Gao, Jianhua Ruan:
Computational modeling of in vivo and in vitro protein-DNA interactions by multiple instance learning. Bioinform. 33(14): 2097-2105 (2017) - [j20]Zhandong Liu, W. Jim Zheng, Genevera I. Allen, Yin Liu, Jianhua Ruan, Zhongming Zhao:
The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: from big data to big analytical tools. BMC Bioinform. 18(S-11): 405:1-405:3 (2017) - [j19]W. Jim Zheng, Jianhua Ruan, Hua Xu, Zhongming Zhao, Zhangdong Liu:
The International Conference on Intelligent Biology and Medicine (ICIBM) 2016: putting systems biology to work. BMC Syst. Biol. 11(S-5): 88:1-88:3 (2017) - [j18]Lu Liu, Jianhua Ruan:
Utilizing networks for differential analysis of chromatin interactions. J. Bioinform. Comput. Biol. 15(6): 1740008:1-1740008:16 (2017) - 2016
- [j17]Zhongming Zhao, Yunlong Liu, Yufei Huang, Kun Huang, Jianhua Ruan:
Advancing Systems Biology in the International Conference on Intelligent Biology and Medicine (ICIBM) 2015. BMC Syst. Biol. 10(S-3): 61 (2016) - [j16]Md. Jamiul Jahid, Jianhua Ruan:
Structure-based prediction of drug side effects using a novel classification algorithm. Int. J. Comput. Biol. Drug Des. 9(1/2): 87-101 (2016) - 2014
- [j15]Md. Jamiul Jahid, Tim Hui-Ming Huang, Jianhua Ruan:
A personalized committee classification approach to improving prediction of breast cancer metastasis. Bioinform. 30(13): 1858-1866 (2014) - 2013
- [j14]Chengwei Lei, Jianhua Ruan:
A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity. Bioinform. 29(3): 355-364 (2013) - [j13]Zhen Gao, Ruizhe Zhao, Jianhua Ruan:
A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks. BMC Genom. 14(S-1): S4 (2013) - [c17]Lu Liu, Jianhua Ruan:
Network-based pathway enrichment analysis. BIBM 2013: 218-221 - [c16]Md. Jamiul Jahid, Jianhua Ruan:
An ensemble approach for drug side effect prediction. BIBM 2013: 440-445 - [c15]Zhen Gao, Jianhua Ruan:
A structure-based approach to predicting in vitro transcription factor-DNA interaction. GENSiPS 2013: 9 - 2012
- [c14]Jianhua Ruan, Md. Jamiul Jahid, Fei Gu, Chengwei Lei, Yi-Wen Huang, Ya-Ting Hsu, David G. Mutch, Chun-Liang Chen, Nameer B. Kirma, Tim Hui-Ming Huang:
Network-based classification of recurrent endometrial cancers using high-throughput DNA methylation data. BCB 2012: 418-425 - [c13]Chengwei Lei, Jianhua Ruan:
A random walk based approach for improving protein-protein interaction network and protein complex prediction. BIBM 2012: 1-6 - [c12]Saleh Tamim, Jianhua Ruan:
Functional evaluation and analysis of predicted miRNA-mRNA regulatory network. RACS 2012: 70-71 - [c11]Md. Jamiul Jahid, Jianhua Ruan:
A novel approach for cancer outcome prediction using personalized classifier. RACS 2012: 72-73 - [c10]Zhen Gao, Ruizhe Zhao, Jianhua Ruan:
A genome-wide cis-regulatory element discovery method based on promoter sequences and gene co-expression networks. RACS 2012: 74-75 - 2011
- [j12]Jianhua Ruan, Joseph Perez, Brian Hernandez, Chengwei Lei, Garry Sunter, Valerie M. Sponsel:
Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana. BMC Bioinform. 12(S-12): S2 (2011) - [c9]Md. Jamiul Jahid, Jianhua Ruan:
Identification of biomarkers in breast cancer metastasis by integrating protein-protein interaction network and gene expression data. GENSiPS 2011: 60-63 - 2010
- [j11]Chengwei Lei, Jianhua Ruan:
A particle swarm optimization-based algorithm for finding gapped motifs. BioData Min. 3: 9 (2010) - [j10]Jianhua Ruan, Angela K. Dean, Weixiong Zhang:
A general co-expression network-based approach to gene expression analysis: comparison and applications. BMC Syst. Biol. 4: 8 (2010) - [j9]Amy M. Wiles, Mark Doderer, Jianhua Ruan, Tingting Gu, Ravi Dashnamoorthy, Barron Blackman, Alexander J. R. Bishop:
Building and analyzing protein interactome networks by cross-species comparisons. BMC Syst. Biol. 4: 36 (2010) - [c8]Xuefeng Zhou, Jianhua Ruan, Weixiong Zhang:
Promoter prediction based on a multiple instance learning scheme. BCB 2010: 295-301 - [c7]Chengwei Lei, Jianhua Ruan:
Finding Gapped Motifs by a Novel Evolutionary Algorithm. EvoBIO 2010: 50-61
2000 – 2009
- 2009
- [j8]Angela K. Dean, Stephen E. Harris, Ivo Kalajzic, Jianhua Ruan:
A systems biology approach to the identification and analysis of transcriptional regulatory networks in osteocytes. BMC Bioinform. 10(S-9): 5 (2009) - [j7]Chengwei Lei, Jianhua Ruan:
A novel swarm intelligence algorithm for finding DNA motifs. Int. J. Comput. Biol. Drug Des. 2(4): 323-339 (2009) - [c6]Jianhua Ruan:
A Fully Automated Method for Discovering Community Structures in High Dimensional Data. ICDM 2009: 968-973 - 2007
- [j6]Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang:
Characterization and Identification of MicroRNA Core Promoters in Four Model Species. PLoS Comput. Biol. 3(3) (2007) - [c5]Jianhua Ruan, Weixiong Zhang:
An Efficient Spectral Algorithm for Network Community Discovery and Its Applications to Biological and Social Networks. ICDM 2007: 643-648 - 2006
- [j5]Jianhua Ruan, Weixiong Zhang:
A bi-dimensional regression tree approach to the modeling of gene expression regulation. Bioinform. 22(3): 332-340 (2006) - [c4]Jianhua Ruan, Weixiong Zhang:
Identification and Evaluation of Weak Community Structures in Networks. AAAI 2006: 470-475 - [c3]Jianhua Ruan, Weixiong Zhang:
Identification and Evaluation of Functional Modules in Gene Co-expression Networks. Systems Biology and Computational Proteomics 2006: 57-76 - 2005
- [j4]Weixiong Zhang, Jianhua Ruan, Tuan-hua David Ho, Youngsook You, Taotao Yu, Ralph S. Quatrano:
Cis-regulatory element based targeted gene finding: genome-wide identification of abscisic acid- and abiotic stress-responsive genes in Arabidopsis thaliana. Bioinform. 21(14): 3074-3081 (2005) - [j3]Jianhua Ruan, Weixiong Zhang:
CAGER: classification analysis of gene expression regulation using multiple information sources. BMC Bioinform. 6: 114 (2005) - [c2]Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang:
Computational Characterization and Identification of Core Promoters of MicroRNA Genes in C. elegans , H. sapiens and A. thaliana. Systems Biology and Regulatory Genomics 2005: 235-248 - 2004
- [j2]Jianhua Ruan, Gary D. Stormo, Weixiong Zhang:
An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots. Bioinform. 20(1): 58-66 (2004) - [j1]Jianhua Ruan, Gary D. Stormo, Weixiong Zhang:
ILM: a web server for predicting RNA secondary structures with pseudoknots. Nucleic Acids Res. 32(Web-Server-Issue): 146-149 (2004) - 2003
- [c1]Jianhua Ruan, Gary D. Stormo, Weixiong Zhang:
An Iterative Loop Matching Approach to the Prediction of RNA Secondary Stru. CSB 2003: 519-520
Coauthor Index
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