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ORCIDSrinivas Aluru
Person information
- affiliation: Georgia Institute of Technology, Atlanta, GA, USA
- affiliation (1999 - 2013): Iowa State University, Ames, Iowa, USA
- affiliation (1996 - 1999): New Mexico State University, Las Cruces, NM, USA
- affiliation (1994 - 1996): Syracuse University, NY, USA
- affiliation (former): Indian Institute of Technology, Madras, India
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2020 – today
- 2024
[j69]Neda Tavakoli
, Daniel Gibney, Srinivas Aluru:
GraphSlimmer: Preserving Read Mappability with the Minimum Number of Variants. J. Comput. Biol. 31(7): 616-637 (2024)- 2023
- [j68]Ankit Srivastava, Sriram P. Chockalingam, Srinivas Aluru:
A Parallel Framework for Constraint-Based Bayesian Network Learning via Markov Blanket Discovery. IEEE Trans. Parallel Distributed Syst. 34(6): 1699-1715 (2023) - [j67]Shruti Shivakumar, Jiajia Li, Ramakrishnan Kannan, Srinivas Aluru:
Sparse Symmetric Format for Tucker Decomposition. IEEE Trans. Parallel Distributed Syst. 34(6): 1743-1756 (2023) - [c130]Shruti Shivakumar, Ilya Amburg, Sinan G. Aksoy, Jiajia Li, Stephen J. Young, Srinivas Aluru:
Fast Parallel Tensor Times Same Vector for Hypergraphs. HiPC 2023: 324-334 - [i10]Shruti Shivakumar, Ilya Amburg, Sinan G. Aksoy, Jiajia Li, Stephen J. Young, Srinivas Aluru:
Fast Parallel Tensor Times Same Vector for Hypergraphs. CoRR abs/2311.08595 (2023) - 2022
- [j66]Maneesha Aluru, Harsh Shrivastava, Sriram P. Chockalingam, Shruti Shivakumar, Srinivas Aluru:
EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networks. Bioinform. 38(5): 1312-1319 (2022) - [j65]Harsh Shrivastava, Xiuwei Zhang, Le Song, Srinivas Aluru:
GRNUlar: A Deep Learning Framework for Recovering Single-Cell Gene Regulatory Networks. J. Comput. Biol. 29(1): 27-44 (2022) - [j64]Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru:
On the Hardness of Sequence Alignment on De Bruijn Graphs. J. Comput. Biol. 29(12): 1377-1396 (2022) - [c129]Neda Tavakoli, Daniel Gibney, Srinivas Aluru:
Haplotype-aware variant selection for genome graphs. BCB 2022: 51:1-51:9 - [c128]Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru:
The Complexity of Approximate Pattern Matching on de Bruijn Graphs. RECOMB 2022: 263-278 - [c127]Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru:
Feasibility of Flow Decomposition with Subpath Constraints in Linear Time. WABI 2022: 17:1-17:16 - [e8]Donald A. Adjeroh, Qi Long, Xinghua Mindy Shi, Fei Guo, Xiaohua Hu, Srinivas Aluru, Giri Narasimhan, Jianxin Wang, Mingon Kang, Ananda Mondal, Jin Liu:
IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2022, Las Vegas, NV, USA, December 6-8, 2022. IEEE 2022, ISBN 978-1-6654-6819-0 [contents] - [i9]Daniel Gibney, Sharma V. Thankachan, Srinivas Aluru:
The Complexity of Approximate Pattern Matching on De Bruijn Graphs. CoRR abs/2201.12454 (2022) - 2021
- [j63]Chirag Jain, Neda Tavakoli, Srinivas Aluru:
A variant selection framework for genome graphs. Bioinform. 37(Supplement): 460-467 (2021) - [j62]Haowen Zhang, Haoran Li, Chirag Jain, Haoyu Cheng, Kin Fai Au, Heng Li, Srinivas Aluru:
Real-time mapping of nanopore raw signals. Bioinform. 37(Supplement): 477-483 (2021) - [j61]Srinivas Aluru:
Editorial: From the New Editor-in-Chief. IEEE ACM Trans. Comput. Biol. Bioinform. 18(6): 2058 (2021) - [c126]Shruti Shivakumar, Jiajia Li, Ramakrishnan Kannan, Srinivas Aluru:
Efficient Parallel Sparse Symmetric Tucker Decomposition for High-Order Tensors. ACDA 2021: 193-204 - [c125]Ankit Srivastava, Sriram P. Chockalingam, Maneesha Aluru, Srinivas Aluru:
Parallel construction of module networks. SC 2021: 26 - 2020
- [j60]Sriram P. Chockalingam, Jodh Pannu, Sahar Hooshmand, Sharma V. Thankachan, Srinivas Aluru:
An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction. BMC Bioinform. 21-S(6): 404 (2020) - [j59]Chirag Jain, Haowen Zhang, Yu Gao, Srinivas Aluru:
On the Complexity of Sequence-to-Graph Alignment. J. Comput. Biol. 27(4): 640-654 (2020) - [j58]Indranil Roy, Ankit Srivastava, Matt Grimm, Srinivas Aluru:
Interval stabbing on the Automata Processor. J. Parallel Distributed Comput. 135: 234-245 (2020) - [j57]Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru:
Sequential and parallel algorithms for all-pair k-mismatch maximal common substrings. J. Parallel Distributed Comput. 144: 68-79 (2020) - [j56]Tony Pan, Rahul Nihalani, Srinivas Aluru:
Fast de Bruijn Graph Compaction in Distributed Memory Environments. IEEE ACM Trans. Comput. Biol. Bioinform. 17(1): 136-148 (2020) - [c124]Harsh Shrivastava, Xinshi Chen, Binghong Chen, Guanghui Lan, Srinivas Aluru, Han Liu, Le Song:
GLAD: Learning Sparse Graph Recovery. ICLR 2020 - [c123]Ankit Srivastava, Sriram P. Chockalingam, Srinivas Aluru:
A parallel framework for constraint-based bayesian network learning via markov blanket discovery. SC 2020: 7 - [e7]Xintao Wu, Chris Jermaine, Li Xiong, Xiaohua Hu, Olivera Kotevska, Siyuan Lu, Weija Xu, Srinivas Aluru, Chengxiang Zhai, Eyhab Al-Masri, Zhiyuan Chen, Jeff Saltz:
2020 IEEE International Conference on Big Data (IEEE BigData 2020), Atlanta, GA, USA, December 10-13, 2020. IEEE 2020, ISBN 978-1-7281-6251-5 [contents]
2010 – 2019
- 2019
- [j55]Indranil Roy, Ankit Srivastava, Matt Grimm, Marziyeh Nourian, Michela Becchi, Srinivas Aluru:
Evaluating High Performance Pattern Matching on the Automata Processor. IEEE Trans. Computers 68(8): 1201-1212 (2019) - [j54]Tony Pan, Patrick Flick, Chirag Jain, Yongchao Liu, Srinivas Aluru:
Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems. IEEE ACM Trans. Comput. Biol. Bioinform. 16(4): 1117-1131 (2019) - [c122]Nagakishore Jammula, Srinivas Aluru:
ParRefCom: Parallel Reference-based Compression of Paired-end Genomics Read Datasets. BCB 2019: 447-456 - [c121]Md. Vasimuddin, Sanchit Misra, Heng Li, Srinivas Aluru:
Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems. IPDPS 2019: 314-324 - [c120]Chirag Jain, Sanchit Misra, Haowen Zhang, Alexander T. Dilthey, Srinivas Aluru:
Accelerating Sequence Alignment to Graphs. IPDPS 2019: 451-461 - [c119]Chirag Jain, Haowen Zhang, Yu Gao, Srinivas Aluru:
On the Complexity of Sequence to Graph Alignment. RECOMB 2019: 85-100 - [c118]Patrick Flick, Srinivas Aluru:
Distributed enhanced suffix arrays: efficient algorithms for construction and querying. SC 2019: 72:1-72:17 - [c117]Chirag Jain, Haowen Zhang, Alexander T. Dilthey, Srinivas Aluru:
Validating Paired-End Read Alignments in Sequence Graphs. WABI 2019: 17:1-17:13 - [i8]Harsh Shrivastava, Xinshi Chen, Binghong Chen, Guanghui Lan, Srinivas Aluru, Le Song:
GLAD: Learning Sparse Graph Recovery. CoRR abs/1906.00271 (2019) - [i7]Harsh Shrivastava, Eugene Bart, Bob Price, Hanjun Dai, Bo Dai, Srinivas Aluru:
Cooperative neural networks (CoNN): Exploiting prior independence structure for improved classification. CoRR abs/1906.00291 (2019) - [i6]Md. Vasimuddin, Sanchit Misra, Heng Li, Srinivas Aluru:
Efficient Architecture-Aware Acceleration of BWA-MEM for Multicore Systems. CoRR abs/1907.12931 (2019) - 2018
- [j53]Chirag Jain, Sergey Koren, Alexander T. Dilthey, Adam M. Phillippy, Srinivas Aluru:
A fast adaptive algorithm for computing whole-genome homology maps. Bioinform. 34(17): i748-i756 (2018) - [j52]Rosario I. Corona, Sanjana Sudarshan, Srinivas Aluru, Jun-tao Guo:
An SVM-based method for assessment of transcription factor-DNA complex models. BMC Bioinform. 19-S(20): 49-57 (2018) - [j51]Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy:
A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases. J. Comput. Biol. 25(7): 766-779 (2018) - [c116]Sanchit Misra, Tony C. Pan, Kanak Mahadik, George Powley, Priya N. Vaidya, Md. Vasimuddin, Srinivas Aluru:
Performance extraction and suitability analysis of multi- and many-core architectures for next generation sequencing secondary analysis. PACT 2018: 3:1-3:14 - [c115]Sahar Hooshmand, Paniz Abedin, Daniel Gibney, Srinivas Aluru, Sharma V. Thankachan:
Faster Computation of Genome Mappability. BCB 2018: 537 - [c114]Jodh Pannu, Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru:
An Alignment-free Heuristic for Fast Sequence Comparisons with Applications to Phylogeny Reconstruction. BCB 2018: 540 - [c113]Sahar Hooshmand, Paniz Abedin, Daniel Gibney, Srinivas Aluru, Sharma V. Thankachan:
Faster Computation of Genome Mappability with one Mismatch. ICCABS 2018: 1 - [c112]Md. Vasimuddin, Sriram P. Chockalingam, Srinivas Aluru:
A Parallel Algorithm for Bayesian Network Inference Using Arithmetic Circuits. IPDPS 2018: 34-43 - [c111]Srinivas Aluru, David A. Bader, Paul Medvedev:
Introduction to HiCOMB 2018. IPDPS Workshops 2018: 226 - [c110]Harsh Shrivastava, Eugene Bart, Bob Price, Hanjun Dai, Bo Dai, Srinivas Aluru:
Cooperative neural networks (CoNN): Exploiting prior independence structure for improved classification. NeurIPS 2018: 4130-4140 - [c109]Sharma V. Thankachan, Chaitanya Aluru, Sriram P. Chockalingam, Srinivas Aluru:
Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis. RECOMB 2018: 211-224 - [c108]Tony C. Pan, Sanchit Misra, Srinivas Aluru:
Optimizing high performance distributed memory parallel hash tables for DNA k-mer counting. SC 2018: 11:1-11:13 - [e6]Srinivas Aluru, Ananth Kalyanaraman, Debajyoti Bera, Kishore Kothapalli, David Abramson, Ilkay Altintas, Sanjukta Bhowmick, Madhu Govindaraju, Smruti Ranjan Sarangi, Sushil K. Prasad, Steven Bogaerts, Vikas Saxena, Sanjay Goel:
2018 Eleventh International Conference on Contemporary Computing, IC3 2018, Noida, India, August 2-4, 2018. IEEE Computer Society 2018, ISBN 978-1-5386-6834-4 [contents] - 2017
- [j50]Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Ambujam Krishnan, Srinivas Aluru:
A greedy alignment-free distance estimator for phylogenetic inference. BMC Bioinform. 18(8): 238:1-238:8 (2017) - [j49]Patrick Flick, Chirag Jain, Tony Pan, Srinivas Aluru:
Reprint of "A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications". Parallel Comput. 70: 54-65 (2017) - [j48]Chirag Jain, Patrick Flick, Tony Pan, Oded Green, Srinivas Aluru:
An Adaptive Parallel Algorithm for Computing Connected Components. IEEE Trans. Parallel Distributed Syst. 28(9): 2428-2439 (2017) - [c107]Nagakishore Jammula, Sriram P. Chockalingam, Srinivas Aluru:
Distributed Memory Partitioning of High-Throughput Sequencing Datasets for Enabling Parallel Genomics Analyses. BCB 2017: 417-424 - [c106]Sriram P. Chockalingam, Maneesha Aluru, Hongqing Guo, Yanhai Yin, Srinivas Aluru:
Reverse Engineering Gene Networks: A Comparative Study at Genome-scale. BCB 2017: 480-490 - [c105]Rosario I. Corona, Sanjana Sudarshan, Jun-tao Guo, Srinivas Aluru:
Confidence assessment of protein-DNA complex models. BIBM 2017: 9-15 - [c104]Rahul Nihalani, Sriram P. Chockalingam, Shaowei Zhu, Vijay V. Vazirani, Srinivas Aluru:
Probabilistic estimation of overlap graphs for large sequence datasets. BIBM 2017: 247-252 - [c103]Md. Vasimuddin, Srinivas Aluru:
Parallel Exact Dynamic Bayesian Network Structure Learning with Application to Gene Networks. HiPC 2017: 42-51 - [c102]Patrick Flick, Srinivas Aluru:
Parallel Construction of Suffix Trees and the All-Nearest-Smaller-Values Problem. IPDPS 2017: 12-21 - [c101]Chirag Jain, Alexander T. Dilthey, Sergey Koren, Srinivas Aluru, Adam M. Phillippy:
A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases. RECOMB 2017: 66-81 - [e5]Vijay Raghavan, Srinivas Aluru, George Karypis, Lucio Miele, Xindong Wu:
2017 IEEE International Conference on Data Mining, ICDM 2017, New Orleans, LA, USA, November 18-21, 2017. IEEE Computer Society 2017, ISBN 978-1-5386-3835-4 [contents] - [e4]Raju Gottumukkala, Xia Ning, Guozhu Dong, Vijay Raghavan, Srinivas Aluru, George Karypis, Lucio Miele, Xindong Wu:
2017 IEEE International Conference on Data Mining Workshops, ICDM Workshops 2017, New Orleans, LA, USA, November 18-21, 2017. IEEE Computer Society 2017, ISBN 978-1-5386-3800-2 [contents] - [i5]Yongchao Liu, Tony Pan, Oded Green, Srinivas Aluru:
Parallelized Kendall's Tau Coefficient Computation via SIMD Vectorized Sorting On Many-Integrated-Core Processors. CoRR abs/1704.03767 (2017) - 2016
- [j47]Yongchao Liu, Martin Loewer, Srinivas Aluru, Bertil Schmidt:
SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations. BMC Syst. Biol. 10(S-2): 47 (2016) - [j46]Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Alberto Apostolico, Srinivas Aluru:
ALFRED: A Practical Method for Alignment-Free Distance Computation. J. Comput. Biol. 23(6): 452-460 (2016) - [j45]Sharma V. Thankachan, Alberto Apostolico, Srinivas Aluru:
A Provably Efficient Algorithm for the k-Mismatch Average Common Substring Problem. J. Comput. Biol. 23(6): 472-482 (2016) - [j44]Indranil Roy, Srinivas Aluru:
Discovering Motifs in Biological Sequences Using the Micron Automata Processor. IEEE ACM Trans. Comput. Biol. Bioinform. 13(1): 99-111 (2016) - [c100]Rahul Nihalani, Srinivas Aluru:
Effective Utilization of Paired Reads to Improve Length and Accuracy of Contigs in Genome Assembly. BCB 2016: 355-363 - [c99]Tony Pan, Patrick Flick, Chirag Jain, Yongchao Liu, Srinivas Aluru:
Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems. BCB 2016: 422-433 - [c98]Srinivas Aluru:
Genomes Galore: Big Data Challenges in the Life Sciences. HiPC 2016: 1 - [c97]Indranil Roy, Ankit Srivastava, Srinivas Aluru:
Programming Techniques for the Automata Processor. ICPP 2016: 205-210 - [c96]Indranil Roy, Nagakishore Jammula, Srinivas Aluru:
Algorithmic Techniques for Solving Graph Problems on the Automata Processor. IPDPS 2016: 283-292 - [c95]Srinivas Aluru, David A. Bader, Ananth Kalyanaraman, Jaroslaw Zola:
HiCOMB Introduction and Committees. IPDPS Workshops 2016: 407 - [c94]Vipin Sachdeva, Srinivas Aluru, David A. Bader:
A Memory and Time Scalable Parallelization of the Reptile Error-Correction Code. IPDPS Workshops 2016: 453-462 - [c93]Indranil Roy, Ankit Srivastava, Marziyeh Nourian, Michela Becchi, Srinivas Aluru:
High Performance Pattern Matching Using the Automata Processor. IPDPS 2016: 1123-1132 - [c92]Sharma V. Thankachan, Sriram P. Chockalingam, Srinivas Aluru:
An Efficient Algorithm for Finding All Pairs k-Mismatch Maximal Common Substrings. ISBRA 2016: 3-14 - [c91]Yongchao Liu, Tony Pan, Srinivas Aluru:
Parallel Pairwise Correlation Computation on Intel Xeon Phi Clusters. SBAC-PAD 2016: 141-149 - [c90]Indranil Roy, Ankit Srivastava, Matt Grimm, Srinivas Aluru:
Parallel Interval Stabbing on the Automata Processor. IA3@SC 2016: 10-17 - [c89]Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru:
A parallel algorithm for finding all pairs k-mismatch maximal common substrings. SC 2016: 784-794 - [r7]Srinivas Aluru:
Text Indexing. Encyclopedia of Algorithms 2016: 2226-2231 - [i4]Yongchao Liu, Srinivas Aluru:
LightScan: Faster Scan Primitive on CUDA Compatible Manycore Processors. CoRR abs/1604.04815 (2016) - [i3]Yongchao Liu, Tony Pan, Srinivas Aluru:
Parallel Pairwise Correlation Computation On Intel Xeon Phi Clusters. CoRR abs/1605.01584 (2016) - [i2]Chirag Jain, Patrick Flick, Tony Pan, Oded Green, Srinivas Aluru:
An Adaptive Parallel Algorithm for Computing Connectivity. CoRR abs/1607.06156 (2016) - 2015
- [j43]Soumitra Pal, Srinivas Aluru:
In search of perfect reads. BMC Bioinform. 16(S17): S7 (2015) - [j42]Srinivas Aluru, Yogesh Simmhan:
Editorial: Scalable Systems for Big Data Management and Analytics. J. Parallel Distributed Comput. 79-80: 1-2 (2015) - [j41]Sai Kiranmayee Samudrala, Jaroslaw Zola, Srinivas Aluru, Baskar Ganapathysubramanian:
Parallel Framework for Dimensionality Reduction of Large-Scale Datasets. Sci. Program. 2015: 180214:1-180214:12 (2015) - [j40]Srinivas Aluru, Donna K. Slonim:
Guest Editors' Introduction: Selected Papers from ACM-BCB 2013. IEEE ACM Trans. Comput. Biol. Bioinform. 12(1): 2-3 (2015) - [j39]Sanchit Misra, Kiran Pamnany, Srinivas Aluru:
Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel®Xeon Phi™ Coprocessor. IEEE ACM Trans. Comput. Biol. Bioinform. 12(5): 1008-1020 (2015) - [c88]Srinivas Aluru:
Parallel machine learning approaches for reverse engineering genome-scale networks. BIBM 2015: 3 - [c87]Yongchao Liu, Martin Loewer, Srinivas Aluru, Bertil Schmidt:
SNVSniffer: An integrated caller for germline and somatic SNVs based on Bayesian models. BIBM 2015: 83-90 - [c86]Srinivas Aluru:
Big data in life sciences and public health. HiPC Workshops 2015: 25 - [c85]Nagakishore Jammula, Sriram P. Chockalingam, Srinivas Aluru:
Parallel Read Error Correction for Big Genomic Datasets. HiPC 2015: 446-455 - [c84]Sriram P. Chockalingam, Maneesha Aluru, Srinivas Aluru:
Information Theory Based Genome-Scale Gene Networks Construction Using MapReduce. HiPC 2015: 464-473 - [c83]Inna Rytsareva, Seth Sims, Sriram P. Chockalingam, Srinivas Aluru, David S. Campo, Cansu Tetik, Sharma V. Thankachan, Yury Khudyakov, Yueli Zheng, Chirag Jain, Amanda Sue:
Efficient detection of viral transmission with threshold-based methods. ICCABS 2015: 1-6 - [c82]Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Ambujam Krishnan, Srinivas Aluru:
A greedy alignment-free distance estimator for phylogenetic inference (extended abstract). ICCABS 2015: 1 - [c81]Sanguthevar Rajasekaran, Srinivas Aluru, David A. Bader:
HiCOMB Introduction and Committees. IPDPS Workshops 2015: 329-330 - [c80]Srinivas Aluru, Alberto Apostolico, Sharma V. Thankachan:
Efficient Alignment Free Sequence Comparison with Bounded Mismatches. RECOMB 2015: 1-12 - [c79]Patrick Flick, Chirag Jain, Tony Pan, Srinivas Aluru:
A parallel connectivity algorithm for de Bruijn graphs in metagenomic applications. SC 2015: 15:1-15:11 - [c78]Patrick Flick, Srinivas Aluru:
Parallel distributed memory construction of suffix and longest common prefix arrays. SC 2015: 16:1-16:10 - [c77]Kiran Pamnany, Sanchit Misra, Md. Vasimuddin, Xing Liu, Edmond Chow, Srinivas Aluru:
Dtree: Dynamic Task Scheduling at Petascale. ISC 2015: 122-138 - 2014
- [j38]Srinivas Aluru, Nagakishore Jammula:
A Review of Hardware Acceleration for Computational Genomics. IEEE Des. Test 31(1): 19-30 (2014) - [c76]Soumitra Pal, Srinivas Aluru:
In search of perfect reads. ICCABS 2014: 1-2 - [c75]Sanchit Misra, Kiran Pamnany, Srinivas Aluru:
Parallel Mutual Information Based Construction of Whole-Genome Networks on the Intel (R) Xeon Phi (TM) Coprocessor. IPDPS 2014: 241-250 - [c74]Indranil Roy, Srinivas Aluru:
Finding Motifs in Biological Sequences Using the Micron Automata Processor. IPDPS 2014: 415-424 - [c73]Alba Cristina Magalhaes Alves de Melo, Srinivas Aluru, David A. Bader:
HiCOMB Introduction and Committees. IPDPS Workshops 2014: 497-498 - [c72]Sanchit Misra, Md. Vasimuddin, Kiran Pamnany, Sriram P. Chockalingam, Yong Dong, Min Xie, Maneesha R. Aluru, Srinivas Aluru:
Parallel Bayesian Network Structure Learning for Genome-Scale Gene Networks. SC 2014: 461-472 - [i1]Yetian Chen, Jin Tian, Olga Nikolova, Srinivas Aluru:
A Parallel Algorithm for Exact Bayesian Structure Discovery in Bayesian Networks. CoRR abs/1408.1664 (2014) - 2013
- [j37]Xiao Yang, Sriram P. Chockalingam, Srinivas Aluru:
A survey of error-correction methods for next-generation sequencing. Briefings Bioinform. 14(1): 56-66 (2013) - [j36]Xiao Yang, Jaroslaw Zola, Srinivas Aluru:
Large-Scale metagenomic sequence Clustering on Map-Reduce Clusters. J. Bioinform. Comput. Biol. 11(1) (2013) - [j35]Olga Nikolova, Jaroslaw Zola, Srinivas Aluru:
Parallel globally optimal structure learning of Bayesian networks. J. Parallel Distributed Comput. 73(8): 1039-1048 (2013) - [j34]Abhinav Sarje, Srinivas Aluru:
All-pairs computations on many-core graphics processors. Parallel Comput. 39(2): 79-93 (2013) - [c71]Srinivas Aluru:
Large-scale metagenomic clustering via quasi clique enumeration and read assignment ambiguity resolution. ICCABS 2013: 1 - [c70]Jaroslaw Zola, David A. Bader, Srinivas Aluru:
HiCOMB Introduction. IPDPS Workshops 2013: 499-500 - 2012
- [c69]