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International Journal of Data Mining and Bioinformatics, Volume 3
Volume 3, Number 1, 2009
- Kuan-Ming Lin, Jaewoo Kang, Hanjun Shin, Jusang Lee:
A cube framework for incorporating inter-gene information into biological data mining. 3-22 - Yin-Fu Huang, Yi-Chao Jhan, Sing-Wu Liou:
Finding new Core Promoter Elements using backward-looking strategies. 23-39 - Mathew Palakal, Pavithra G. Naidu:
An on demand data integration model for biological databases. 40-54 - Yasir Arafat, Joarder Kamruzzaman
, Gour C. Karmakar, Juan Fernández-Recio
:
Predicting protein - protein interfaces as clusters of Optimal Docking Area points. 55-67 - Shi-Hua Zhang, Hong-Wei Liu, Xue-Mei Ning, Xiang-Sun Zhang:
A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks. 68-84 - Xue-Qiang Zeng, Guo-Zheng Li
, Gengfeng Wu, Jack Y. Yang, Mary Qu Yang:
Irrelevant gene elimination for Partial Least Squares based Dimension Reduction by using feature probes. 85-103
Volume 3, Number 2, 2009
- Kazuhiro Seki, Javed Mostafa:
Discovering implicit associations among critical biological entities. 105-123 - Bin Song, Padmavati Sridhar, Tamer Kahveci, Sanjay Ranka
:
Double iterative optimisation for metabolic network-based drug target identification. 124-144 - Miew Keen Choong
, David Levy, Hong Yan
:
Study of microarray time series data based on Forward-Backward Linear Prediction and Singular Value Decomposition. 145-159 - Arnaud Fontaine, Hélène Touzet
:
Computational identification of protein-coding sequences by comparative analysis. 160-176 - Lei Yu:
Feature cluster selection for high-throughput data analysis. 177-191 - Feng Yue, Jijun Tang:
A space-efficient algorithm for three sequence alignment and ancestor inference. 192-204 - Frank DiMaio, Ameet Soni, George N. Phillips, Jude W. Shavlik:
Spherical-harmonic decomposition for molecular recognition in electron-density maps. 205-227
Volume 3, Number 3, 2009
- Kevin Y. Yip
, Lin Cheung, David W. Cheung, Liping Jing, Michael K. Ng
:
A semi-supervised approach to projected clustering with applications to microarray data. 229-259 - Dietmar H. Dorr, Anne M. Denton:
Clustering sequences by overlap. 260-279 - Antonio Ruiz
, Olcay Sertel, Manuel Ujaldon
, Ümit V. Çatalyürek
, Joel H. Saltz, Metin N. Gurcan
:
Stroma classification for neuroblastoma on graphics processors. 280-298 - Yutaka Sasaki, Brian Rea, Sophia Ananiadou:
Clinical text classification under the Open and Closed Topic Assumptions. 299-313 - Quan Wen, Kate Luby-Phelps, Jean Gao:
Tracking multiple interacting subcellular structure by sequential Monte Carlo method. 314-332 - Young-Rae Cho, Aidong Zhang, Xian Xu:
Semantic similarity based feature extraction from microarray expression data. 333-345 - Kamal Al-Nasr, Jing He
:
An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate Descent. 346-361
Volume 3, Number 4, 2009
- Leif E. Peterson, Xue-wen Chen:
Editorial. Int. J. Data Min. Bioinform. 3(4): 363-364 (2009) - Li Chen, Jianhua Xuan, Chen Wang
, Yue Joseph Wang, Ie-Ming Shih, Tian-Li Wang, Zhen Zhang, Robert Clarke
, Eric P. Hoffman
:
Biomarker identification by knowledge-driven multilevel ICA and motif analysis. 365-381 - Leif E. Peterson
, Matthew A. Coleman
:
Logistic ensembles of Random Spherical Linear Oracles for microarray classification. 382-397 - Zhenqiu Liu, Feng Jiang:
Gene identification and survival prediction with Lp Cox regression and novel similarity measure. 398-408 - Ronald C. Taylor
, Mudita Singhal, Don Simone Daly, Jason M. Gilmore, William R. Cannon, Kelly Domico, Amanda M. White, Deanna L. Auberry, Kenneth J. Auberry, Brian Hooker
, Gregory B. Hurst
, Jason E. McDermott
, W. Hayes McDonald
, Dale Pelletier, Denise Schmoyer, H. Steven Wiley
:
An analysis pipeline for the inference of protein-protein interaction networks. 409-430 - Valeria Fionda, Luigi Palopoli
, Simona Panni
, Simona E. Rombo:
A technique to search for functional similarities in protein-protein interaction networks. 431-453 - Feng Cui, Kriti Mukhopadhyay, Won-Bin Young
, Robert L. Jernigan, Zhijun Wu:
Refinement of under-determined loops of Human Prion Protein by database-derived distance constraints. 454-468 - Xiaoyong Sun, Di Wu, Robert L. Jernigan, Zhijun Wu:
PRTAD: A database for protein residue torsion angle distributions. 469-482

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