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Hélène Touzet
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- affiliation: LIFL Lille, France
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2020 – today
- 2021
- [e2]Thierry Lecroq, Hélène Touzet:
String Processing and Information Retrieval - 28th International Symposium, SPIRE 2021, Lille, France, October 4-6, 2021, Proceedings. Lecture Notes in Computer Science 12944, Springer 2021, ISBN 978-3-030-86691-4 [contents] - 2020
- [j23]Leandro Lima, Camille Marchet, Ségolène Caboche, Corinne Da Silva, Benjamin Istace, Jean-Marc Aury, Hélène Touzet, Rayan Chikhi:
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data. Briefings Bioinform. 21(4): 1164-1181 (2020)
2010 – 2019
- 2018
- [j22]Pierre Pericard, Yoann Dufresne, Loïc Couderc, Samuel Blanquart, Hélène Touzet:
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes. Bioinform. 34(4): 585-591 (2018) - [j21]Chadi Saad, Laurent Noé, Hugues Richard, Julie Leclerc, Marie-Pierre Buisine, Hélène Touzet, Martin Figeac:
DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data. BMC Bioinform. 19(1): 223:1-223:10 (2018) - 2017
- [j20]Juraj Michalik, Hélène Touzet, Yann Ponty:
Efficient approximations of RNA kinetics landscape using non-redundant sampling. Bioinform. 33(14): i283-i292 (2017) - 2016
- [j19]Christophe Vroland, Mikaël Salson, Sébastien Bini, Hélène Touzet:
Approximate search of short patterns with high error rates using the 01⁎0 lossless seeds. J. Discrete Algorithms 37: 3-16 (2016) - [c14]Hélène Touzet:
On the Levenshtein Automaton and the Size of the Neighbourhood of a Word. LATA 2016: 207-218 - 2015
- [j18]Azadeh Saffarian, Mathieu Giraud, Hélène Touzet:
Modeling Alternate RNA Structures in Genomic Sequences. J. Comput. Biol. 22(3): 190-204 (2015) - [e1]Mihai Pop, Hélène Touzet:
Algorithms in Bioinformatics - 15th International Workshop, WABI 2015, Atlanta, GA, USA, September 10-12, 2015, Proceedings. Lecture Notes in Computer Science 9289, Springer 2015, ISBN 978-3-662-48220-9 [contents] - 2014
- [j17]Robert Giegerich, Hélène Touzet:
Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems. Algorithms 7(1): 62-144 (2014) - [c13]Azadeh Saffarian, Mathieu Giraud, Hélène Touzet:
Searching for alternate RNA structures in genomic sequences. CMSR@ECCB 2014: 13-24 - [c12]Christophe Vroland, Mikaël Salson, Hélène Touzet:
Lossless Seeds for Searching Short Patterns with High Error Rates. IWOCA 2014: 364-375 - 2012
- [j16]Julien Allali, Cédric Saule, Cédric Chauve, Yves D'Aubenton-Carafa, Alain Denise, Christine Drevet, Pascal Ferraro, Daniel Gautheret, Claire Herrbach, Fabrice Leclerc, Antoine de Monte, Aïda Ouangraoua, Marie-France Sagot, Michel Termier, Claude Thermes, Hélène Touzet:
BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms. Adv. Bioinformatics 2012: 893048:1-893048:5 (2012) - [j15]Evguenia Kopylova, Laurent Noé, Hélène Touzet:
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data. Bioinform. 28(24): 3211-3217 (2012) - [j14]Azadeh Saffarian, Mathieu Giraud, Antoine de Monte, Hélène Touzet:
RNA Locally Optimal Secondary Structures. J. Comput. Biol. 19(10): 1120-1133 (2012) - 2010
- [j13]Laurie Tonon, Hélène Touzet, Jean-Stéphane Varré:
TFM-Explorer: mining cis-regulatory regions in genomes. Nucleic Acids Res. 38(Web-Server-Issue): 286-292 (2010) - [j12]Guillaume Blin, Alain Denise, Serge Dulucq, Claire Herrbach, Hélène Touzet:
Alignments of RNA Structures. IEEE ACM Trans. Comput. Biol. Bioinform. 7(2): 309-322 (2010)
2000 – 2009
- 2009
- [j11]Arnaud Fontaine, Hélène Touzet:
Computational identification of protein-coding sequences by comparative analysis. Int. J. Data Min. Bioinform. 3(2): 160-176 (2009) - [c11]Aude Liefooghe, Hélène Touzet, Jean-Stéphane Varré:
Self-overlapping Occurrences and Knuth-Morris-Pratt Algorithm for Weighted Matching. LATA 2009: 481-492 - 2008
- [j10]Arnaud Fontaine, Antoine de Monte, Hélène Touzet:
MAGNOLIA: multiple alignment of protein-coding and structural RNA sequences. Nucleic Acids Res. 36(Web-Server-Issue): 14-18 (2008) - 2007
- [j9]Hélène Touzet, Jean-Stéphane Varré:
Efficient and accurate P-value computation for Position Weight Matrices. Algorithms Mol. Biol. 2 (2007) - [j8]Hélène Touzet:
Comparing similar ordered trees in linear-time. J. Discrete Algorithms 5(4): 696-705 (2007) - [c10]Arnaud Fontaine, Hélène Touzet:
Computational Identification of Protein-Coding Sequences by Comparative Analysis. BIBM 2007: 95-102 - 2006
- [j7]Matthieu Defrance, Hélène Touzet:
Predicting transcription factor binding sites using local over-representation and comparative genomics. BMC Bioinform. 7: 396 (2006) - [c9]Aude Liefooghe, Hélène Touzet, Jean-Stéphane Varré:
Large Scale Matching for Position Weight Matrices. CPM 2006: 401-412 - [c8]Guillaume Blin, Hélène Touzet:
How to Compare Arc-Annotated Sequences: The Alignment Hierarchy. SPIRE 2006: 291-303 - 2005
- [j6]Serge Dulucq, Hélène Touzet:
Decomposition algorithms for the tree edit distance problem. J. Discrete Algorithms 3(2-4): 448-471 (2005) - [c7]Hélène Touzet:
A Linear Tree Edit Distance Algorithm for Similar Ordered Trees. CPM 2005: 334-345 - 2004
- [j5]Hélène Touzet, Olivier Perriquet:
CARNAC: folding families of related RNAs. Nucleic Acids Res. 32(Web-Server-Issue): 142-145 (2004) - 2003
- [j4]Olivier Perriquet, Hélène Touzet, Max Dauchet:
Finding the common structure shared by two homologous RNAs. Bioinform. 19(1): 108-116 (2003) - [j3]Hélène Touzet:
Tree edit distance with gaps. Inf. Process. Lett. 85(3): 123-129 (2003) - [c6]Serge Dulucq, Hélène Touzet:
Analysis of Tree Edit Distance Algorithms. CPM 2003: 83-95 - 2002
- [j2]Hélène Touzet:
A Characterisation of Multiply Recursive Functions with Higman's Lemma. Inf. Comput. 178(2): 534-544 (2002) - 2001
- [j1]Guillaume Bonfante, Adam Cichon, Jean-Yves Marion, Hélène Touzet:
Algorithms with polynomial interpretation termination proof. J. Funct. Program. 11(1): 33-53 (2001)
1990 – 1999
- 1999
- [c5]Hélène Touzet:
A Characterisation of Multiply Recursive Functions with Higman's Lemma. RTA 1999: 163-174 - 1998
- [c4]Guillaume Bonfante, Adam Cichon, Jean-Yves Marion, Hélène Touzet:
Complexity Classes and Rewrite Systems with Polynomial Interpretation. CSL 1998: 372-384 - [c3]Hélène Touzet:
A Complex Example of a Simplifying Rewrite System. ICALP 1998: 507-517 - [c2]Hélène Touzet:
Encoding the Hydra Battle as a Rewrite System. MFCS 1998: 267-276 - 1997
- [b1]Hélène Touzet:
Propriétés combinatoires pour la terminaison de systèmes de réécriture. (Combinatorial properties for termination in term rewriting theory). Henri Poincaré University, Nancy, France, 1997 - 1996
- [c1]E. A. Cichon, Hélène Touzet:
An Ordinal Calculus for Proving Termination in Term Rewriting. CAAP 1996: 226-240
Coauthor Index
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