- 2019
- Shaahin Angizi, Jiao Sun, Wei Zhang
, Deliang Fan:
AlignS: A Processing-In-Memory Accelerator for DNA Short Read Alignment Leveraging SOT-MRAM. DAC 2019: 144 - Saransh Gupta, Mohsen Imani, Behnam Khaleghi, Venkatesh Kumar, Tajana Rosing:
RAPID: A ReRAM Processing in-Memory Architecture for DNA Sequence Alignment. ISLPED 2019: 1-6 - 2018
- Jeremie S. Kim, Damla Senol Cali
, Hongyi Xin
, Donghyuk Lee, Saugata Ghose, Mohammed Alser, Hasan Hassan, Oguz Ergin
, Can Alkan
, Onur Mutlu:
GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies. BMC Genom. 19(S2) (2018) - Nicolas Moser
, Jesus Rodriguez-Manzano
, Tor Sverre Lande
, Pantelis Georgiou
:
A Scalable ISFET Sensing and Memory Array With Sensor Auto-Calibration for On-Chip Real-Time DNA Detection. IEEE Trans. Biomed. Circuits Syst. 12(2): 390-401 (2018) - Ciprian Pungila
, Darius Galis
, Viorel Negru:
Optimizing Pattern-Matching for Memory-Efficient Heterogeneous DNA Processing in Bioinformatics. SACI 2018: 1-5 - Tony C. Pan, Sanchit Misra, Srinivas Aluru:
Optimizing high performance distributed memory parallel hash tables for DNA k-mer counting. SC 2018: 11:1-11:13 - 2017
- Jeremie S. Kim, Damla Senol Cali, Hongyi Xin, Donghyuk Lee, Saugata Ghose, Mohammed Alser, Hasan Hassan, Oguz Ergin, Can Alkan, Onur Mutlu:
GRIM-Filter: Fast Seed Location Filtering in DNA Read Mapping Using Processing-in-Memory Technologies. CoRR abs/1711.01177 (2017) - 2016
- Sai Zhu
, Jin-yan Cai, Ya-feng Meng:
Partial-DNA cyclic memory for bio-inspired electronic cell. Genet. Program. Evolvable Mach. 17(2): 83-117 (2016) - William Baskett
, Matthew Spencer, Chi-Ren Shyu:
Large scale extraction of perfect and imperfect DNA palindromes using in-memory computing. BIBM 2016: 850-857 - Dominique Lavenier, Jean-François Roy, David Furodet:
DNA mapping using Processor-in-Memory architecture. BIBM 2016: 1429-1435 - Sebastian Dorok:
Memory Efficient Processing of DNA Sequences in Relational Main-Memory Database Systems. GvD 2016: 39-43 - Petre G. Pop:
In-memory dedicated dot-plot analysis for DNA repeats detection. ICCP 2016: 317-320 - 2014
- Shoko Maeno, Naoto Matsuo, Shohei Nakamura, Akira Heya, Tadao Takada, Kazushige Yamana, Masataka Fukuyama, Shin Yokoyama:
Study of charge retention mechanism for DNA memory FET. IEICE Electron. Express 11(5): 20130900 (2014) - Khalid Mohammad Jaber
, Rosni Abdullah, Nur'Aini Abdul Rashid:
Fast decision tree-based method to index large DNA-protein sequence databases using hybrid distributed-shared memory programming model. Int. J. Bioinform. Res. Appl. 10(3): 321-340 (2014) - Masud Mansuripur:
DNA, Human Memory, and the Storage Technology of the 21st Century. CoRR abs/1408.7073 (2014) - 2012
- Masanori Arita, Masami Hagiya, Masahiro Takinoue, Fumiaki Tanaka:
DNA Memory. Handbook of Natural Computing 2012: 1281-1318 - 2011
- Hieu Dinh, Sanguthevar Rajasekaran:
A memory-efficient data structure representing exact-match overlap graphs with application for next-generation DNA assembly. Bioinform. 27(14): 1901-1907 (2011) - David L. González-Álvarez, Miguel A. Vega-Rodríguez
, Juan Antonio Gómez Pulido
, Juan Manuel Sánchez-Pérez:
Discovering DNA Motifs with a Parallel Shared Memory Differential Evolution. EUROCAST (1) 2011: 232-239 - 2010
- Hieu Dinh, Sanguthevar Rajasekaran:
A memory-efficient data structure representing exact-match overlap graphs with application for next generation DNA assembly. CoRR abs/1009.3984 (2010) - 2009
- Jeffrey J. Cook, Craig B. Zilles:
Characterizing and optimizing the memory footprint of de novo short read DNA sequence assembly. ISPASS 2009: 143-152 - 2008
- Masahito Yamamoto, Satoshi Kashiwamura, Azuma Ohuchi, Masashi Furukawa:
Large-scale DNA memory based on the nested PCR. Nat. Comput. 7(3): 335-346 (2008) - Elham Parvinnia, Mohammad Taheri
, Koorush Ziarati
:
An Improved Longest Common Subsequence Algorithm for Reducing Memory Complexity in Global Alignment of DNA Sequences. BMEI (1) 2008: 57-61 - 2007
- Marc Blenkiron, D. K. Arvind, Jamie A. Davies:
Design of an irreversible DNA memory element. Nat. Comput. 6(4): 403-411 (2007) - Masayuki Yamamura, Noriko Hirayama, Ken Komiya
:
An implementation of Aqueous memory molecules with light responsive DNAs. IEEE Congress on Evolutionary Computation 2007: 1843-1848 - Atsushi Kameda, Satoshi Kashiwamura, Masahito Yamamoto, Azuma Ohuchi, Masami Hagiya:
Combining Randomness and a High-Capacity DNA Memory. DNA 2007: 109-118 - Masahito Yamamoto, Satoshi Kashiwamura, Azuma Ohuchi:
DNA Memory with 16.8M Addresses. DNA 2007: 99-108 - 2006
- Russell J. Deaton, Junghuei Chen:
Conceptual and contextual DNA-based memory. Int. J. Knowl. Based Intell. Eng. Syst. 10(1): 41-48 (2006) - Rui Shogenji, Naoya Tate, Taro Beppu, Yusuke Ogura
, Jun Tanida:
Local Area Manipulation of DNA Molecules for Photonic DNA Memory. DNA 2006: 374-380 - 2005
- Junghuei Chen, Russell J. Deaton, Yu-Zhen Wang:
A DNA-based memory with in vitro learning and associative recall. Nat. Comput. 4(2): 83-101 (2005) - Yusuke Ogura
, Taro Beppu, Masahiro Takinoue, Akira Suyama, Jun Tanida:
Control of DNA Molecules on a Microscopic Bead Using Optical Techniques for Photonic DNA Memory. DNA 2005: 213-223