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Daron M. Standley
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2020 – today
- 2022
- [j17]Zichang Xu, Hendra S. Ismanto, Hao Zhou, Dianita S. Saputri, Fuminori Sugihara, Daron M. Standley:
Advances in antibody discovery from human BCR repertoires. Frontiers Bioinform. 2 (2022)
2010 – 2019
- 2019
- [j16]John Rozewicki, Songling Li
, Karlou Mar Amada, Daron M. Standley, Kazutaka Katoh
:
MAFFT-DASH: integrated protein sequence and structural alignment. Nucleic Acids Res. 47(Webserver-Issue): W5-W10 (2019) - 2016
- [j15]Kazutaka Katoh
, Daron M. Standley:
A simple method to control over-alignment in the MAFFT multiple sequence alignment program. Bioinform. 32(13): 1933-1942 (2016) - 2014
- [j14]Kazuo Yamashita, Kazuyoshi Ikeda, Karlou Mar Amada, Shide Liang, Yuko Tsuchiya, Haruki Nakamura, Hiroki Shirai, Daron M. Standley:
Kotai Antibody Builder: automated high-resolution structural modeling of antibodies. Bioinform. 30(22): 3279-3280 (2014) - 2013
- [j13]Alexis Vandenbon, Yutaro Kumagai
, Shunsuke Teraguchi
, Karlou Mar Amada, Shizuo Akira, Daron M. Standley:
A Parzen window-based approach for the detection of locally enriched transcription factor binding sites. BMC Bioinform. 14: 26 (2013) - [j12]Shide Liang, Dandan Zheng, Daron M. Standley, Huarong Guo, Chi Zhang
:
A novel function prediction approach using protein overlap networks. BMC Syst. Biol. 7: 61 (2013) - 2012
- [j11]Akira R. Kinjo
, Hirofumi Suzuki, Reiko Yamashita, Yasuyo Ikegawa, Takahiro Kudou, Reiko Igarashi, Yumiko Kengaku, Hasumi Cho, Daron M. Standley, Atsushi Nakagawa
, Haruki Nakamura:
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format. Nucleic Acids Res. 40(Database-Issue): 453-460 (2012) - [c1]Ashwini Patil, Shunsuke Teraguchi, Huy Dinh, Kenta Nakai, Daron M. Standley:
Functional Annotation of Intrinsically Disordered Domains by Their Amino Acid Content Using IDD Navigator. Pacific Symposium on Biocomputing 2012: 164-175 - 2011
- [j10]Shide Liang, Dandan Zheng, Chi Zhang
, Daron M. Standley:
Fast and accurate prediction of protein side-chain conformations. Bioinform. 27(20): 2913-2914 (2011) - [j9]Michael Fernández
, Yutaro Kumagai
, Daron M. Standley, Akinori Sarai, Kenji Mizuguchi
, Shandar Ahmad
:
Prediction of dinucleotide-specific RNA-binding sites in proteins. BMC Bioinform. 12(S-13): S5 (2011) - [j8]Shide Liang, Yaoqi Zhou
, Nick V. Grishin, Daron M. Standley:
Protein side chain modeling with orientation-dependent atomic force fields derived by series expansions. J. Comput. Chem. 32(8): 1680-1686 (2011) - 2010
- [j7]Daron M. Standley, Reiko Yamashita, Akira R. Kinjo
, Hiroyuki Toh, Haruki Nakamura:
SeSAW: balancing sequence and structural information in protein functional mapping. Bioinform. 26(9): 1258-1259 (2010) - [j6]Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita
, Yasunori Yamamoto, Atsuko Yamaguchi
, Shuichi Kawashima
, Hong-Woo Chun, Jan Aerts
, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal
, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández
, Akira Funahashi
, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge
, Richard C. G. Holland
, Yoshinobu Kano
, Edward A. Kawas, Arnaud Kerhornou
, Eri Kibukawa, Akira R. Kinjo
, Michael Kuhn, Hilmar Lapp
, Heikki Lehväslaiho
, Hiroyuki Nakamura, Yasukazu Nakamura
, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins
, René Ranzinger, Florian Reisinger, Lukasz Salwínski
, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles
, Rutger A. Vos
, Mark D. Wilkinson
, William S. York, Christian M. Zmasek
, Kiyoshi Asai, Toshihisa Takagi:
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1: 8 (2010) - [j5]Shide Liang, Dandan Zheng, Daron M. Standley, Bo Yao, Martin Zacharias, Chi Zhang
:
EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results. BMC Bioinform. 11: 381 (2010) - [j4]Shunsuke Teraguchi, Ashwini Patil
, Daron M. Standley:
Intrinsically disordered domains deviate significantly from random sequences in mammalian proteins. BMC Bioinform. 11(S-7): S7 (2010)
2000 – 2009
- 2008
- [j3]Daron M. Standley, Akira R. Kinjo
, Kengo Kinoshita, Haruki Nakamura:
Protein structure databases with new web services for structural biology and biomedical research. Briefings Bioinform. 9(4): 276-285 (2008) - 2007
- [j2]Daron M. Standley, Hiroyuki Toh, Haruki Nakamura:
ASH structure alignment package: Sensitivity and selectivity in domain classification. BMC Bioinform. 8 (2007) - 2005
- [j1]Daron M. Standley, Hiroyuki Toh, Haruki Nakamura:
GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures. BMC Bioinform. 6: 221 (2005)
Coauthor Index
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