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ORCIDBriefings in Bioinformatics, Volume 9
Volume 9, Number 1, January 2008
- Wentian Li
:
Three lectures on case-control genetic association analysis. 1-13 - Martin Yuille, Gert-Jan B. van Ommen, Christian Bréchot, Anne Cambon-Thomsen, Georges Dagher, Ulf Landegren, Jan-Eric Litton, Markus Pasterk, Leena Peltonen, Mike Taussig, Heinz-Erich Wichmann, Kurt Zatloukal:
Biobanking for Europe. 14-24 - Jose M. Arteaga-Salas, Harry Zuzan, William B. Langdon, Graham J. G. Upton, Andrew P. Harrison:
An overview of image-processing methods for Affymetrix GeneChips. 25-33 - Matteo Brilli, Renato Fani, Pietro Liò:
Current trends in the bioinformatic sequence analysis of metabolic pathways in prokaryotes. 34-45 - David Stephen Horner, Walter Pirovano, Graziano Pesole:
Correlated substitution analysis and the prediction of amino acid structural contacts. 46-56 - Paolo Romano:
Automation of in-silico data analysis processes through workflow management systems. 57-68 - Sean D. Mooney, Peter H. Baenziger:
Extensible open source content management systems and frameworks: a solution for many needs of a bioinformatics group. 69-74 - Daniel L. Rubin, Nigam Shah, Natalya Fridman Noy:
Biomedical ontologies: a functional perspective. 75-90
- Jihoon Yang:
Bioinformatics - From Genomes to Therapies: Edited by Thomas Lengauer. 91-93 - Ann E. Loraine:
Bioinformatics, Genomics, and Proteomics: Getting the Big Picture (Biotechnology in the 21st Century): Ann Finney Batiza. 94-95
Volume 9, Number 2, March 2008
- Mario Cannataro:
Computational proteomics: management and analysis of proteomics data. 97-101
- Melanie Hilario, Alexandros Kalousis:
Approaches to dimensionality reduction in proteomic biomarker studies. 102-118 - Annalisa Barla, Giuseppe Jurman, Samantha Riccadonna, Stefano Merler, Marco Chierici, Cesare Furlanello:
Machine learning methods for predictive proteomics. 119-128 - Thomas Villmann, Frank-Michael Schleif, Markus Kostrzewa, Axel Walch, Barbara Hammer:
Classification of mass-spectrometric data in clinical proteomics using learning vector quantization methods. 129-143 - Pierangelo Veltri:
Algorithms and tools for analysis and management of mass spectrometry data. 144-155 - Jason W. H. Wong, Matthew J. Sullivan, Gerard Cagney:
Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments. 156-165 - Sandra E. Orchard, Henning Hermjakob:
The HUPO proteomics standards initiative - easing communication and minimizing data loss in a changing world. 166-173
- David Stead, Norman W. Paton, Paolo Missier, Suzanne M. Embury, Cornelia Hedeler, Binling Jin, Alistair J. P. Brown, Alun D. Preece:
Information quality in proteomics. 174-188
Volume 9, Number 3, May 2008
- Dougu Nam, Seon-Young Kim:
Gene-set approach for expression pattern analysis. 189-197 - Paolo Sonego, András Kocsor, Sándor Pongor:
ROC analysis: applications to the classification of biological sequences and 3D structures. 198-209 - Stephen John Sammut, Robert D. Finn, Alex Bateman:
Pfam 10 years on: 10 000 families and still growing. 210-219 - Interoperability with Moby 1.0 - It's better than sharing your toothbrush! 220-231
- Ina Koch, Georg Fuellen:
A review of bioinformatics education in Germany. 232-242 - Alexander Sczyrba, Susanne Konermann, Robert Giegerich:
Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server. 243-249 - Robert Giegerich, Alvis Brazma, Inge Jonassen, Esko Ukkonen, Martin Vingron:
The BREW workshop series: a stimulating experience in PhD education. 250-253
- Narayanan Perumal:
Cardiac Gene Expression: Methods and Protocols.: Edited by Jun Zhang and Gregg Rokosh. 254-255 - Zhen Lin:
Bioinformatics Basics: Applications in Biological Science and Medicine.: Edited by Lukas K. Buehler and Hooman H. Rashidi. 256-257 - Zhaohui S. Qin:
Data Analysis and Graphics Using R: An Example-Based Approach, Second Edition.: John Maindonald and John Braun. 258-259
Volume 9, Number 4, July 2008
- Vladimir Brusic, Shoba Ranganathan:
Critical technologies for bioinformatics. 261-262 - Marie-Paule Lefranc, Véronique Giudicelli, Laetitia Regnier, Patrice Duroux:
IMGT, a system and an ontology that bridge biological and computational spheres in bioinformatics. 263-275 - Daron M. Standley, Akira R. Kinjo, Kengo Kinoshita, Haruki Nakamura:
Protein structure databases with new web services for structural biology and biomedical research. 276-285 - Kazutaka Katoh, Hiroyuki Toh:
Recent developments in the MAFFT multiple sequence alignment program. 286-298 - Sudhir Kumar, Masatoshi Nei, Joel Dudley, Koichiro Tamura:
MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. 299-306 - Gary B. Fogel:
Computational intelligence approaches for pattern discovery in biological systems. 307-316 - Zhenjun Hu, Evan S. Snitkin, Charles DeLisi:
VisANT: an integrative framework for networks in systems biology. 317-325 - Edgar Wingender:
The TRANSFAC project as an example of framework technology that supports the analysis of genomic regulation. 326-332 - Peter J. Hunter, Edmund J. Crampin, Poul M. F. Nielsen:
Bioinformatics, multiscale modeling and the IUPS Physiome Project. 333-343
Volume 9, Number 5, September 2008
- Roderic D. M. Page:
Biodiversity informatics: the challenge of linking data and the role of shared identifiers. 345-354 - Angelika Merkel, Neil J. Gemmell:
Detecting short tandem repeats from genome data: opening the software black box. 355-366 - Rutger W. W. Brouwer, Oscar P. Kuipers, Sacha A. F. T. van Hijum:
The relative value of operon predictions. 367-375 - Natalia V. Sernova, Mikhail S. Gelfand:
Identification of replication origins in prokaryotic genomes. 376-391 - Shuangge Ma, Jian Huang:
Penalized feature selection and classification in bioinformatics. 392-403 - Rainer Breitling, David R. Gilbert, Monika Heiner, Richard J. Orton:
A structured approach for the engineering of biochemical network models, illustrated for signalling pathways. 404-421 - Francisco J. Planes, John E. Beasley:
A critical examination of stoichiometric and path-finding approaches to metabolic pathways. 422-436 - Lorenzo Dematté, Corrado Priami, Alessandro Romanel:
The Beta Workbench: a computational tool to study the dynamics of biological systems. 437-449
- Dougu Nam, Seon-Young Kim:
Gene-set approach for expression pattern analysis. 450
Volume 9, Number 6, November 2008
- Stephan Philippi:
Data and knowledge integration in the life sciences. 451
- Jung-Jae Kim, Dietrich Rebholz-Schuhmann:
Categorization of services for seeking information in biomedical literature: a typology for improvement of practice. 452-465 - Rainer Winnenburg, Thomas Wächter, Conrad Plake, Andreas Doms, Michael Schroeder:
Facts from text: can text mining help to scale-up high-quality manual curation of gene products with ontologies? 466-478 - Pankaj Agarwal, David B. Searls:
Literature mining in support of drug discovery. 479-492 - Heinz Stockinger, Teresa K. Attwood, Shahid Nadeem Chohan, Richard G. Côté, Philippe Cudré-Mauroux, Laurent Falquet, Pedro L. Fernandes, Robert D. Finn, Taavi Hupponen, Eija Korpelainen, Alberto Labarga, Aurélie Laugraud, Tania Lima, Evangelos Pafilis, Marco Pagni, Steve Pettifer, Isabelle Phan, Nazim Rahman:
Experience using web services for biological sequence analysis. 493-505 - Carole A. Goble, Robert Stevens, Duncan Hull, Katy Wolstencroft, Rodrigo Lopez:
Data curation + process curation=data integration + science. 506-517 - Holger Michael, Jennifer Hogan, Alexander E. Kel, Olga V. Kel-Margoulis, Frank Schacherer, Nico Voss, Edgar Wingender:
Building a knowledge base for systems pathology. 518-531 - Damian Smedley, Morris A. Swertz, Katy Wolstencroft, Glenn Proctor, Michael Zouberakis, Jonathan B. L. Bard, John M. Hancock, Paul N. Schofield:
Solutions for data integration in functional genomics: a critical assessment and case study. 532-544
- Jean-Jacques Daudin:
Methods in Microarray Normalization, Edited by Phillip Stafford. 545-546 - Jim Whitfield:
Mathematics of Evolution and Phylogeny, Edited by Olivier Gascuel. 547-549 - Mihaela Pertea:
Problems and Solutions in Biological Sequence Analysis, Mark Borodovsky, Svetlana Ekisheva. 550-551
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