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ORCIDEivind Hovig
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2020 – today
- 2023
[j26]Robert Hanes, Pilar Ayuda-Durán
, Leiv Rønneberg, Sigve Nakken, Eivind Hovig, Manuela Zucknick, Jorrit M. Enserink:
screenwerk: a modular tool for the design and analysis of drug combination screens. Bioinform. 39(1) (2023)- 2022
- [j25]Bastian Fromm, Eirik Høye, Diana Domanska, Xiangfu Zhong, Ernesto Aparicio-Puerta, Vladimir Ovchinnikov, Sinan U. Umu, Peter J. Chabot, Wenjing Kang, Morteza Aslanzadeh, Marcel Tarbier, Emilio Mármol-Sánchez, Gianvito Urgese, Morten Johansen, Eivind Hovig, Michael Hackenberg, Marc R. Friedländer, Kevin J. Peterson:
MirGeneDB 2.1: toward a complete sampling of all major animal phyla. Nucleic Acids Res. 50(D1): 204-210 (2022) - 2021
- [j24]Milena Pavlovic, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, Knut Waagan, Fabian L. M. Bernal, Alexandre Almeida Costa, Brian Corrie, Rahmad Akbar, Ghadi S. Al Hajj, Gabriel Balaban, Todd M. Brusko, Maria Chernigovskaya, Scott Christley, Lindsay G. Cowell, Robert Frank, Ivar Grytten, Sveinung Gundersen, Ingrid Hobæk Haff, Eivind Hovig, Ping-Han Hsieh, Günter Klambauer, Marieke L. Kuijjer, Christin Lund-Andersen, Antonio Martini, Thomas Minotto, Johan Pensar, Knut D. Rand, Enrico Riccardi, Philippe A. Robert, Artur Rocha, Andrei Slabodkin, Igor Snapkov, Ludvig Magne Sollid, Dmytro Titov, Cédric R. Weber, Michael Widrich, Gur Yaari, Victor Greiff, Geir Kjetil Sandve:
The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires. Nat. Mach. Intell. 3(11): 936-944 (2021) - 2020
- [j23]Bastian Fromm, Diana Domanska, Eirik Høye, Vladimir Ovchinnikov, Wenjing Kang, Ernesto Aparicio-Puerta, Morten Johansen, Kjersti Flatmark, Anthony Mathelier, Eivind Hovig, Michael Hackenberg, Marc R. Friedländer, Kevin J. Peterson:
MirGeneDB 2.0: the metazoan microRNA complement. Nucleic Acids Res. 48(Database-Issue): D132-D141 (2020) - [i4]David Salgado, Irina M. Armean, Michael Baudis, Sergi Beltran, Salvador Capella-Gutiérrez, Denise Carvalho-Silva, Victoria Dominguez Del Angel, Joaquín Dopazo, Laura I. Furlong, Bo Gao, Leyla Jael García Castro, Dietlind Gerloff, Ivo Gut, Attila Gyenesei, Nina Habermann, John M. Hancock, Marc Hanauer, Eivind Hovig, Lennart F. Johansson, Thomas Keane, Jan Korbel, Katharina B. Lauer, Steve Laurie, Brane Leskosek, David Lloyd, Tomàs Marquès-Bonet, Hailiang Mei, Katalin Monostory, Janet Piñero, Krzysztof Poterlowicz, Ana Rath, Pubudu Samarakoon, Ferran Sanz, Gary Saunders, Daoud Sie, Morris A. Swertz, Kirill Tsukanov, Alfonso Valencia, Marko Vidak, Cristina Yenyxe González, Bauke Ylstra, Christophe Béroud:
The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research. F1000Research 9: 1229 (2020)
2010 – 2019
- 2019
- [j22]Chakravarthi Kanduri, Christoph Bock, Sveinung Gundersen, Eivind Hovig, Geir Kjetil Sandve:
Colocalization analyses of genomic elements: approaches, recommendations and challenges. Bioinform. 35(9): 1615-1624 (2019) - 2018
- [j21]Sigve Nakken, Ghislain Fournous, Daniel Vodák, Lars Birger Aasheim, Ola Myklebost, Eivind Hovig:
Personal Cancer Genome Reporter: variant interpretation report for precision oncology. Bioinform. 34(10): 1778-1780 (2018) - [c3]Abdulrahman Azab, Hein Meling, Eivind Hovig, Antti Pursula:
Filesystem Front-end for Seamless Job Management in Sensitive Data e-Infrastructures and Cloud Federation. IEEE BigData 2018: 5126-5131 - [i3]Clément Levin, Emeric Dynomant, Bruno J. Gonzalez, Laurent Mouchard, David Landsman, Eivind Hovig, Kristian Vlahovicek:
A data-supported history of bioinformatics tools. CoRR abs/1807.06808 (2018) - [i2]Kidane M. Tekle, Sveinung Gundersen, Kjetil Klepper, Lars Ailo Bongo, Inge Alexander Raknes, Xiaxi Li, Wei Zhang, Christian Andreetta, Teshome Dagne Mulugeta, Matús Kalas, Morten B. Rye, Erik Hjerde, Jeevan Karloss Antony Samy, Ghislain Fornous, Abdulrahman Azab, Dag Inge Våge, Eivind Hovig, Nils Peder Willassen, Finn Drabløs, Ståle Nygård, Kjell Petersen, Inge Jonassen:
Norwegian e-Infrastructure for Life Sciences (NeLS). F1000Research 7: 968 (2018) - 2017
- [j20]Diana Domanska, Daniel Vodák, Christin Lund-Andersen, Stefania Salvatore, Eivind Hovig, Geir Kjetil Sandve:
The rainfall plot: its motivation, characteristics and pitfalls. BMC Bioinform. 18(1): 264:1-264:11 (2017) - 2016
- [j19]Claus Børnich, Ivar Grytten, Eivind Hovig, Jonas Paulsen, Martin Cech, Geir Kjetil Sandve:
Galaxy Portal: interacting with the galaxy platform through mobile devices. Bioinform. 32(11): 1743-1745 (2016) - [j18]Trevor Clancy, Eivind Hovig:
Profiling networks of distinct immune-cells in tumors. BMC Bioinform. 17: 263 (2016) - 2014
- [j17]Jonas Paulsen, Geir Kjetil Sandve, Sveinung Gundersen, Tonje Lien, Kai Trengereid, Eivind Hovig:
HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization. Bioinform. 30(11): 1620-1622 (2014) - [j16]Ståle Nygård, Trond Reitan, Trevor Clancy, Vegard Nygaard, Johannes Bjørnstad, Biljana Skrbic, Theis Tønnessen, Geir Christensen, Eivind Hovig:
Identifying pathogenic processes by integrating microarray data with prior knowledge. BMC Bioinform. 15: 115 (2014) - [i1]Doug James, Nancy Wilkins-Diehr, Victoria Stodden, Dirk Colbry, Carlos Rosales, Mark R. Fahey, Justin Shi, Rafael Ferreira da Silva, Kyo Lee, Ralph Roskies, Laurence Loewe, Susan Lindsey, Rob Kooper, Lorena A. Barba, David H. Bailey, Jonathan M. Borwein, Óscar Corcho, Ewa Deelman, Michael C. Dietze, Benjamin Gilbert, Jan Harkes, Seth Keele, Praveen Kumar, Jong Lee, Erika Linke, Richard Marciano, Luigi Marini, Chris Mattmann, Dave Mattson, Kenton McHenry, Robert T. McLay, Sheila Miguez, Barbara S. Minsker, María S. Pérez-Hernández, Dan Ryan, Mats Rynge, Idafen Santana-Pérez, Mahadev Satyanarayanan, Gloriana St. Clair, Keith Webster, Eivind Hovig, Daniel S. Katz, Sophie Kay, Geir Kjetil Sandve, David Skinner, Gabrielle Allen, John Cazes, Kym Won Cho, Jim Fonseca, Lorraine J. Hwang, Lars Koesterke, Pragnesh Patel, Line Pouchard, Edward Seidel, Isuru Suriarachchi:
Standing Together for Reproducibility in Large-Scale Computing: Report on reproducibility@XSEDE. CoRR abs/1412.5557 (2014) - 2013
- [j15]Geir Kjetil Sandve, Sveinung Gundersen, Morten Johansen, Ingrid Kristine Glad, Krishanthi Gunathasan, Lars Holden, Marit Holden, Knut Liestøl, Ståle Nygård, Vegard Nygaard, Jonas Paulsen, Halfdan Rydbeck, Kai Trengereid, Trevor Clancy, Finn Drabløs, Egil Ferkingstad, Matús Kalas, Tonje Lien, Morten Rye, Arnoldo Frigessi, Eivind Hovig:
The Genomic HyperBrowser: an analysis web server for genome-scale data. Nucleic Acids Res. 41(Webserver-Issue): 133-141 (2013) - [j14]Morten Mattingsdal, Andrew Anand Brown, Srdjan Djurovic, Ida Elken Sønderby, Andres Server, Ingrid Melle, Ingrid Agartz, Eivind Hovig, Jimmy Jensen, Ole A. Andreassen:
Pathway analysis of genetic markers associated with a functional MRI faces paradigm implicates polymorphisms in calcium responsive pathways. NeuroImage 70: 143-149 (2013) - [j13]Geir Kjetil Sandve, Anton Nekrutenko, James Taylor, Eivind Hovig:
Ten Simple Rules for Reproducible Computational Research. PLoS Comput. Biol. 9(10) (2013) - 2012
- [j12]Josef Thingnes, Timothy J. Lavelle, Arne B. Gjuvsland, Stig W. Omholt, Eivind Hovig:
Towards a quantitative understanding of the MITF-PIAS3-STAT3 connection. BMC Syst. Biol. 6: 11 (2012) - 2011
- [j11]Sveinung Gundersen, Matús Kalas, Osman Abul, Arnoldo Frigessi, Eivind Hovig, Geir Kjetil Sandve:
Identifying elemental genomic track types and representing them uniformly. BMC Bioinform. 12: 494 (2011) - 2010
- [j10]Marco Pedicini, Fredrik Barrenäs, Trevor Clancy, Filippo Castiglione, Eivind Hovig, Kartiek Kanduri, Daniele Santoni, Mikael Benson:
Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation. PLoS Comput. Biol. 6(12) (2010)
2000 – 2009
- 2009
- [j9]Josef Thingnes, Leiv Øyehaug, Eivind Hovig, Stig W. Omholt:
The mathematics of tanning. BMC Syst. Biol. 3: 60 (2009) - 2007
- [j8]Fang Liu, Eivind Tøstesen, Jostein K. Sundet, Tor-Kristian Jenssen, Christoph Bock, Geir Ivar Jerstad, William G. Thilly, Eivind Hovig:
The Human Genomic Melting Map. PLoS Comput. Biol. 3(5) (2007) - 2005
- [j7]Eivind Tøstesen, Geir Ivar Jerstad, Eivind Hovig:
Stitchprofiles.uio.no: analysis of partly melted DNA conformations using stitch profiles. Nucleic Acids Res. 33(Web-Server-Issue): 573-576 (2005) - 2004
- [j6]Fang Liu, Tor-Kristian Jenssen, Vegard Nygaard, John Sack, Eivind Hovig:
FigSearch: a figure legend indexing and classification system. Bioinform. 20(16): 2880-2882 (2004) - [c2]Fang Liu, Tor-Kristian Jenssen, Vegard Nygaard, John Sack, Eivind Hovig:
FigSearch: Using Maximum Entropy Classifier to Categorize Biological Figures. CSB 2004: 476-477 - 2003
- [j5]Junbai Wang, Ola Myklebost, Eivind Hovig:
MGraph: graphical models for microarray data analysis. Bioinform. 19(17): 2210-2211 (2003) - [j4]Junbai Wang, Trond Hellem Bø, Inge Jonassen, Ola Myklebost, Eivind Hovig:
Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data. BMC Bioinform. 4: 60 (2003) - 2002
- [j3]Junbai Wang, Vigdis Nygaard, Birgitte Smith-Sørensen, Eivind Hovig, Ola Myklebost:
MArray: analysing single, replicated or reversed microarray experiments. Bioinform. 18(8): 1139-1140 (2002) - 2000
- [c1]Henryk Jan Komorowski, Torgeir R. Hvidsten, Tor-Kristian Jenssen, Dyre Tjeldvoll, Eivind Hovig, Arne K. Sandvik, Astrid Lægreid:
Towards Knowledge Discovery from cDNA Microarray Gene Expression Data. PKDD 2000: 470-475
1990 – 1999
- 1997
- [j2]Pierre Hainaut, Thierry Soussi, Benny Shomer, M. Hollstein, M. Greenblatt, Eivind Hovig, C. C. Harris, R. Montesano:
Database of p53 gene somatic mutations in human tumors and cell lines: updated compilation and future prospects. Nucleic Acids Res. 25(1): 151-157 (1997) - 1996
- [j1]M. Hollstein, Benny Shomer, M. Greenblatt, Thierry Soussi, Eivind Hovig, R. Montesano, C. C. Harris:
Somatic point mutations in the p53 gene of human tumors and cell lines: updated compilation. Nucleic Acids Res. 24(1): 141-146 (1996)
Coauthor Index
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