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2020 – today
- 2024
[j12]Claudio Arbib, Andrea D'Ascenzo
, Fabrizio Rossi, Daniele Santoni:
An Integer Linear Programming Model to Optimize Coding DNA Sequences By Joint Control of Transcript Indicators. J. Comput. Biol. 31(5): 416-428 (2024)- 2023
- [j11]Nicola Apollonio, Daniel Blankenberg, Fabio Cumbo, Paolo Giulio Franciosa, Daniele Santoni:
Evaluating homophily in networks via HONTO (HOmophily Network TOol): a case study of chromosomal interactions in human PPI networks. Bioinform. 39(1) (2023) - [j10]Carlo Derelitto, Daniele Santoni:
TRANSPARENT: a Python tool for designing transcription factor regulatory networks. Soft Comput. 27(10): 6261-6266 (2023) - [i2]Nimisha Ghosh, Daniele Santoni, Indrajit Saha, Giovanni Felici:
Predicting Transcription Factor Binding Sites using Transformer based Capsule Network. CoRR abs/2310.15202 (2023) - 2021
- [j9]Daniele Santoni:
The impact of flanking sequence features on DNA CpG methylation. Comput. Biol. Chem. 92: 107480 (2021) - [i1]Nicola Apollonio, Paolo Giulio Franciosa, Daniele Santoni:
On function homophily of microbial Protein-Protein Interaction Networks. CoRR abs/2107.10037 (2021)
2010 – 2019
- 2018
- [j8]Duygu Dede Sener, Daniele Santoni, Giovanni Felici, Hasan Ogul:
A Content-Based Retrieval Framework for Whole Metagenome Sequencing Samples. J. Integr. Bioinform. 15(4) (2018) - 2016
- [j7]Daniele Santoni, Elaheh Pourabbas:
Automatic Detection of Words Associations in Texts Based on Joint Distribution of Words Occurrences. Comput. Intell. 32(4): 535-560 (2016) - [j6]Daniele Santoni, Emanuel Weitschek, Giovanni Felici:
Optimal discretization and selection of features by association rates of joint distributions. RAIRO Oper. Res. 50(2): 437-449 (2016) - 2014
- [j5]Setareh Tasdighian, Luisa Di Paola, Micol De Ruvo, Paola Paci, Daniele Santoni, Pasquale Palumbo, Giampiero Mei, Almerinda Di Venere, Alessandro Giuliani:
Modules Identification in Protein Structures: The Topological and Geometrical Solutions. J. Chem. Inf. Model. 54(1): 159-168 (2014) - [j4]Setareh Tasdighian, Luisa Di Paola, Micol De Ruvo, Paola Paci, Daniele Santoni, Pasquale Palumbo, Giampiero Mei, Almerinda Di Venere, Alessandro Giuliani:
Correction to Modules Identification in Protein Structures: The Topological and Geometrical Solutions. J. Chem. Inf. Model. 54(3): 1010 (2014) - [c1]Paolo Tieri, Vinca Prana, Teresa Colombo, Daniele Santoni, Filippo Castiglione:
Multi-scale Simulation of T Helper Lymphocyte Differentiation. BSB 2014: 123-134 - 2012
- [j3]Luisa Di Paola, Paola Paci, Daniele Santoni, Micol De Ruvo, Alessandro Giuliani:
Proteins as Sponges: A Statistical Journey along Protein Structure Organization Principles. J. Chem. Inf. Model. 52(2): 474-482 (2012) - 2010
- [j2]Marco Pedicini, Fredrik Barrenäs, Trevor Clancy, Filippo Castiglione, Eivind Hovig, Kartiek Kanduri, Daniele Santoni, Mikael Benson:
Combining Network Modeling and Gene Expression Microarray Analysis to Explore the Dynamics of Th1 and Th2 Cell Regulation. PLoS Comput. Biol. 6(12) (2010)
2000 – 2009
- 2008
- [j1]Daniele Santoni, Marco Pedicini, Filippo Castiglione:
Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-based model of hypersensitivity reactions. Bioinform. 24(11): 1374-1380 (2008)
Coauthor Index
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