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Journal Articles
- 2025
[j93]Noga Kertes
, Yael Zaffrani-Reznikov, Onur Afacan, Sila Kurugol, Simon K. Warfield, Moti Freiman:
IVIM-Morph: Motion-compensated quantitative Intra-voxel Incoherent Motion (IVIM) analysis for functional fetal lung maturity assessment from diffusion-weighted MRI data. Medical Image Anal. 101: 103445 (2025)- [j92]Bo Li, Qi Zeng, Simon K. Warfield, Davood Karimi:
FetDTIAlign: A deep learning framework for affine and deformable registration of fetal brain dMRI. NeuroImage 311: 121190 (2025) - 2024
- [j91]Serge Vasylechko Didenko, Simon K. Warfield, Sila Kurugol, Onur Afacan:
Improved myelin water fraction mapping with deep neural networks using synthetically generated 3D data. Medical Image Anal. 91: 102966 (2024) - [j90]Camilo Calixto, Camilo Jaimes, Matheus D. Soldatelli, Simon K. Warfield, Ali Gholipour, Davood Karimi:
Anatomically constrained tractography of the fetal brain. NeuroImage 297: 120723 (2024) - 2023
- [j89]Saima Safdar, Benjamin F. Zwick, Yue Yu, George C. Bourantas, Grand R. Joldes, Simon K. Warfield, Damon E. Hyde, Sarah F. Frisken, Tina Kapur, Ron Kikinis, Alexandra J. Golby, Arya Nabavi, Adam Wittek, Karol Miller:
SlicerCBM: automatic framework for biomechanical analysis of the brain. Int. J. Comput. Assist. Radiol. Surg. 18(10): 1925-1940 (2023) - 2022
- [j88]Jeff L. Waugh, Asim A. O. Hassan, John K. Kuster, Jacob M. Levenstein, Simon Keith Warfield, Nikolaos Makris, Norbert Brüggemann, Nutan Sharma, Hans C. Breiter, Anne J. Blood:
An MRI method for parcellating the human striatum into matrix and striosome compartments in vivo. NeuroImage 246: 118714 (2022) - [j87]Benjamin F. Zwick, George C. Bourantas, Saima Safdar, Grand R. Joldes, Damon E. Hyde, Simon K. Warfield, Adam Wittek, Karol Miller:
Patient-specific solution of the electrocorticography forward problem in deforming brain. NeuroImage 263: 119649 (2022) - [j86]Arvind Balachandrasekaran, Alexander Li Cohen, Onur Afacan, Simon K. Warfield, Ali Gholipour:
Reducing the Effects of Motion Artifacts in fMRI: A Structured Matrix Completion Approach. IEEE Trans. Medical Imaging 41(1): 172-185 (2022) - [j85]Yao Sui, Onur Afacan, Camilo Jaimes, Ali Gholipour, Simon K. Warfield:
Scan-Specific Generative Neural Network for MRI Super-Resolution Reconstruction. IEEE Trans. Medical Imaging 41(6): 1383-1399 (2022) - 2021
- [j84]Davood Karimi, Simon K. Warfield, Ali Gholipour:
Transfer learning in medical image segmentation: New insights from analysis of the dynamics of model parameters and learned representations. Artif. Intell. Medicine 116: 102078 (2021) - [j83]Jaume Coll-Font, Onur Afacan, Jeanne Chow, Richard S. Lee, Simon K. Warfield, Sila Kurugol:
Modeling dynamic radial contrast enhanced MRI with linear time invariant systems for motion correction in quantitative assessment of kidney function. Medical Image Anal. 67: 101880 (2021) - [j82]Alexis Reymbaut, Alex Valcourt Caron, Guillaume Gilbert, Filip Szczepankiewicz, Markus Nilsson, Simon K. Warfield, Maxime Descoteaux, Benoit Scherrer:
Magic DIAMOND: Multi-fascicle diffusion compartment imaging with tensor distribution modeling and tensor-valued diffusion encoding. Medical Image Anal. 70: 101988 (2021) - [j81]Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Shadab Khan, Simon K. Warfield, Ali Gholipour:
A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging. Medical Image Anal. 72: 102129 (2021) - [j80]Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Simon K. Warfield, Ali Gholipour:
Learning to estimate the fiber orientation distribution function from diffusion-weighted MRI. NeuroImage 239: 118316 (2021) - [j79]Davood Karimi, Camilo Jaimes, Fedel Machado-Rivas, Lana Vasung, Shadab Khan, Simon K. Warfield, Ali Gholipour:
Deep learning-based parameter estimation in fetal diffusion-weighted MRI. NeuroImage 243: 118482 (2021) - [j78]Yao Sui, Onur Afacan, Camilo Jaimes, Ali Gholipour, Simon K. Warfield:
Gradient-Guided Isotropic MRI Reconstruction From Anisotropic Acquisitions. IEEE Trans. Computational Imaging 7: 1240-1253 (2021) - 2020
- [j77]Davood Karimi, Haoran Dou, Simon K. Warfield, Ali Gholipour:
Deep learning with noisy labels: Exploring techniques and remedies in medical image analysis. Medical Image Anal. 65: 101759 (2020) - [j76]Lipeng Ning, Elisenda Bonet-Carne, Francesco Grussu, Farshid Sepehrband, Enrico Kaden, Jelle Veraart, Stefano B. Blumberg, Can Son Khoo, Marco Palombo, Iasonas Kokkinos, Daniel C. Alexander, Jaume Coll-Font, Benoit Scherrer, Simon K. Warfield, Suheyla Cetin Karayumak, Yogesh Rathi, Simon Koppers, Leon Weninger, Chantal M. W. Tax:
Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results. NeuroImage 221: 117128 (2020) - [j75]Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield:
SLIMM: Slice localization integrated MRI monitoring. NeuroImage 223: 117280 (2020) - 2019
- [j74]Seyed Raein Hashemi, Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour:
Asymmetric Loss Functions and Deep Densely-Connected Networks for Highly-Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection. IEEE Access 7: 1721-1735 (2019) - [j73]Grand Roman Joldes, George C. Bourantas, Benjamin Zwick, Habibullah Amin Chowdhury, Adam Wittek, Sudip Agrawal, Konstantinos A. Mountris, Damon Hyde, Simon K. Warfield, Karol Miller:
Suite of meshless algorithms for accurate computation of soft tissue deformation for surgical simulation. Medical Image Anal. 56: 152-171 (2019) - [j72]Gaëtan Rensonnet, Benoît Scherrer, Gabriel Girard, Aleksandar Jankovski, Simon K. Warfield, Benoît Macq, Jean-Philippe Thiran, Maxime Taquet:
Towards microstructure fingerprinting: Estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations. NeuroImage 184: 964-980 (2019) - [j71]Shadab Khan, Lana Vasung, Bahram Marami, Caitlin K. Rollins, Onur Afacan, Cynthia M. Ortinau, Edward Yang, Simon K. Warfield, Ali Gholipour:
Fetal brain growth portrayed by a spatiotemporal diffusion tensor MRI atlas computed from in utero images. NeuroImage 185: 593-608 (2019) - [j70]Bonnie Alexander, Claire E. Kelly, Christopher L. Adamson, Richard Beare, Diana Zannino, Jian Chen, Andrea L. Murray, Wai Yen Loh, Lillian G. Matthews, Simon K. Warfield, Peter J. Anderson, Lex W. Doyle, Marc L. Seal, Alicia J. Spittle, Jeanie L. Y. Cheong, Deanne K. Thompson:
Changes in neonatal regional brain volume associated with preterm birth and perinatal factors. NeuroImage 185: 654-663 (2019) - [j69]Jeff L. Waugh, John K. Kuster, Miriam L. Makhlouf, Jacob M. Levenstein, Trisha J. Multhaupt-Buell, Simon K. Warfield, Nutan Sharma, Anne J. Blood:
A registration method for improving quantitative assessment in probabilistic diffusion tractography. NeuroImage 189: 288-306 (2019) - [j68]Damon E. Hyde, Jurriaan M. Peters, Simon K. Warfield:
Multi-Resolution Graph Based Volumetric Cortical Basis Functions From Local Anatomic Features. IEEE Trans. Biomed. Eng. 66(12): 3381-3392 (2019) - [j67]Jamshid Sourati, Ali Gholipour, Jennifer G. Dy, Xavier Tomas-Fernandez, Sila Kurugol, Simon K. Warfield:
Intelligent Labeling Based on Fisher Information for Medical Image Segmentation Using Deep Learning. IEEE Trans. Medical Imaging 38(11): 2642-2653 (2019) - 2017
- [j66]Sila Kurugol, Moti Freiman, Onur Afacan, Liran Domachevsky, Jeannette M. Perez-Rossello, Michael J. Callahan, Simon K. Warfield:
Motion-robust parameter estimation in abdominal diffusion-weighted MRI by simultaneous image registration and model estimation. Medical Image Anal. 39: 124-132 (2017) - [j65]Bonnie Alexander, Andrea L. Murray, Wai Yen Loh, Lillian G. Matthews, Christopher L. Adamson, Richard Beare, Jian Chen, Claire E. Kelly, Sandra Rees, Simon K. Warfield, Peter J. Anderson, Lex W. Doyle, Alicia J. Spittle, Jeanie L. Y. Cheong, Marc L. Seal, Deanne K. Thompson:
A new neonatal cortical and subcortical brain atlas: the Melbourne Children's Regional Infant Brain (M-CRIB) atlas. NeuroImage 147: 841-851 (2017) - [j64]Sébastien Tourbier, Clemente Velasco-Annis, Vahid Taimouri, Patric Hagmann, Reto Meuli, Simon K. Warfield, Meritxell Bach Cuadra, Ali Gholipour:
Automated template-based brain localization and extraction for fetal brain MRI reconstruction. NeuroImage 155: 460-472 (2017) - [j63]Bahram Marami, Seyed Sadegh Mohseni Salehi, Onur Afacan, Benoit Scherrer, Caitlin K. Rollins, Edward Yang, Judy A. Estroff, Simon K. Warfield, Ali Gholipour:
Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis. NeuroImage 156: 475-488 (2017) - [j62]Zach Eaton-Rosen, Benoît Scherrer, Andrew Melbourne, Sébastien Ourselin, Jeffrey J. Neil, Simon K. Warfield:
Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI. NeuroImage 162: 65-72 (2017) - [j61]Burak Erem, Damon E. Hyde, Jurriaan M. Peters, Frank H. Duffy, Simon K. Warfield:
Dynamic Electrical Source Imaging (DESI) of Seizures and Interictal Epileptic Discharges Without Ensemble Averaging. IEEE Trans. Medical Imaging 36(1): 98-110 (2017) - [j60]Renaud Hédouin, Olivier Commowick, Elise Bannier, Benoit Scherrer, Maxime Taquet, Simon K. Warfield, Christian Barillot:
Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions. IEEE Trans. Medical Imaging 36(5): 1106-1115 (2017) - [j59]Yuanyuan Jia, Ali Gholipour, Zhongshi He, Simon K. Warfield:
A New Sparse Representation Framework for Reconstruction of an Isotropic High Spatial Resolution MR Volume From Orthogonal Anisotropic Resolution Scans. IEEE Trans. Medical Imaging 36(5): 1182-1193 (2017) - 2016
- [j58]Sila Kurugol, Moti Freiman, Onur Afacan, Jeannette M. Perez-Rossello, Michael J. Callahan, Simon K. Warfield:
Spatially-constrained probability distribution model of incoherent motion (SPIM) for abdominal diffusion-weighted MRI. Medical Image Anal. 32: 173-183 (2016) - [j57]Yuanyuan Jia, Zhongshi He, Ali Gholipour, Simon K. Warfield:
Single Anisotropic 3-D MR Image Upsampling via Overcomplete Dictionary Trained From In-Plane High Resolution Slices. IEEE J. Biomed. Health Informatics 20(6): 1552-1561 (2016) - [j56]Bahram Marami, Benoit Scherrer, Onur Afacan, Burak Erem, Simon K. Warfield, Ali Gholipour:
Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking. IEEE Trans. Medical Imaging 35(10): 2258-2269 (2016) - 2015
- [j55]Maxime Taquet, Benoit Scherrer, Nicolas Boumal, Jurriaan M. Peters, Benoît Macq, Simon K. Warfield:
Improved fidelity of brain microstructure mapping from single-shell diffusion MRI. Medical Image Anal. 26(1): 268-286 (2015) - [j54]Subrahmanyam Gorthi, Alireza Akhondi Asl, Simon K. Warfield:
Optimal MAP Parameters Estimation in STAPLE Using Local Intensity Similarity Information. IEEE J. Biomed. Health Informatics 19(5): 1589-1597 (2015) - [j53]Xavier Tomas-Fernandez, Simon K. Warfield:
A Model of Population and Subject (MOPS) Intensities With Application to Multiple Sclerosis Lesion Segmentation. IEEE Trans. Medical Imaging 34(6): 1349-1361 (2015) - 2014
- [j52]Vahid Taimouri, Alireza Akhondi Asl, Xavier Tomas-Fernandez, Jurriaan M. Peters, Sanjay P. Prabhu, Annapurna Poduri, Masanori Takeoka, Tobias Loddenkemper, Ann Marie R. Bergin, Chellamani Harini, Joseph R. Madsen, Simon K. Warfield:
Electrode localization for planning surgical resection of the epileptogenic zone in pediatric epilepsy. Int. J. Comput. Assist. Radiol. Surg. 9(1): 91-105 (2014) - [j51]Avan Suinesiaputra, Brett R. Cowan, Ahmed O. Al-Agamy, Mustafa A. Elattar, Nicholas Ayache, Ahmed S. Fahmy, Ayman M. Khalifa, Pau Medrano-Gracia, Marie-Pierre Jolly, Alan H. Kadish, Daniel C. Lee, Ján Margeta, Simon K. Warfield, Alistair A. Young:
A collaborative resource to build consensus for automated left ventricular segmentation of cardiac MR images. Medical Image Anal. 18(1): 50-62 (2014) - [j50]Pia Wintermark, Anne Hansen, Simon K. Warfield, Dmitry Dukhovny, Janet S. Soul:
Near-infrared spectroscopy versus magnetic resonance imaging to study brain perfusion in newborns with hypoxic-ischemic encephalopathy treated with hypothermia. NeuroImage 85: 287-293 (2014) - [j49]Damon Hyde, Frank H. Duffy, Simon K. Warfield:
Voxel-Based Dipole Orientation Constraints for Distributed Current Estimation. IEEE Trans. Biomed. Eng. 61(7): 2028-2040 (2014) - [j48]Maxime Taquet, Benoit Scherrer, Olivier Commowick, Jurriaan M. Peters, Mustafa Sahin, Benoît Macq, Simon K. Warfield:
A Mathematical Framework for the Registration and Analysis of Multi-Fascicle Models for Population Studies of the Brain Microstructure. IEEE Trans. Medical Imaging 33(2): 504-517 (2014) - [j47]Alireza Akhondi Asl, Lennox Hoyte, Mark E. Lockhart, Simon K. Warfield:
A Logarithmic Opinion Pool Based STAPLE Algorithm for the Fusion of Segmentations With Associated Reliability Weights. IEEE Trans. Medical Imaging 33(10): 1997-2009 (2014) - 2013
- [j46]Moti Freiman, Jeannette M. Perez-Rossello, Michael J. Callahan, Stephan D. Voss, Kirsten Ecklund, Robert V. Mulkern, Simon K. Warfield:
Reliable estimation of incoherent motion parametric maps from diffusion-weighted MRI using fusion bootstrap moves. Medical Image Anal. 17(3): 325-336 (2013) - [j45]Deanne K. Thompson, Christopher L. Adamson, Gehan Roberts, Nathan Faggian, Stephen J. Wood, Simon K. Warfield, Lex W. Doyle, Peter J. Anderson, Gary F. Egan, Terrie E. Inder:
Hippocampal shape variations at term equivalent age in very preterm infants compared with term controls: Perinatal predictors and functional significance at age 7. NeuroImage 70: 278-287 (2013) - [j44]Alireza Akhondi Asl, Simon K. Warfield:
Simultaneous Truth and Performance Level Estimation Through Fusion of Probabilistic Segmentations. IEEE Trans. Medical Imaging 32(10): 1840-1852 (2013) - [j43]David K. Hammond, Benoit Scherrer, Simon K. Warfield:
Cortical Graph Smoothing: A Novel Method for Exploiting DWI-Derived Anatomical Brain Connectivity to Improve EEG Source Estimation. IEEE Trans. Medical Imaging 32(10): 1952-1963 (2013) - 2012
- [j42]Lara M. Vigneron, Ludovic Noels, Simon K. Warfield, Jacques G. Verly, Pierre Robe:
Serial FEM/XFEM-Based Update of Preoperative Brain Images Using Intraoperative MRI. Int. J. Biomed. Imaging 2012: 872783:1-872783:17 (2012) - [j41]Benoit Scherrer, Ali Gholipour, Simon K. Warfield:
Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Medical Image Anal. 16(7): 1465-1476 (2012) - [j40]Deanne K. Thompson, Terrie E. Inder, Nathan Faggian, Simon K. Warfield, Peter J. Anderson, Lex W. Doyle, Gary F. Egan:
Corpus callosum alterations in very preterm infants: Perinatal correlates and 2 year neurodevelopmental outcomes. NeuroImage 59(4): 3571-3581 (2012) - [j39]Ralph O. Suarez, Olivier Commowick, Sanjay P. Prabhu, Simon K. Warfield:
Automated delineation of white matter fiber tracts with a multiple region-of-interest approach. NeuroImage 59(4): 3690-3700 (2012) - [j38]Ali Gholipour, Alireza Akhondi Asl, Judy A. Estroff, Simon K. Warfield:
Multi-atlas multi-shape segmentation of fetal brain MRI for volumetric and morphometric analysis of ventriculomegaly. NeuroImage 60(3): 1819-1831 (2012) - [j37]Damon Hyde, Frank H. Duffy, Simon K. Warfield:
Anisotropic partial volume CSF modeling for EEG source localization. NeuroImage 62(3): 2161-2170 (2012) - [j36]Deanne K. Thompson, Zohra M. Ahmadzai, Stephen J. Wood, Terrie E. Inder, Simon K. Warfield, Lex W. Doyle, Gary F. Egan:
Optimizing Hippocampal Segmentation in Infants Utilizing MRI Post-Acquisition Processing. Neuroinformatics 10(2): 173-180 (2012) - [j35]Olivier Commowick, Alireza Akhondi Asl, Simon K. Warfield:
Estimating A Reference Standard Segmentation With Spatially Varying Performance Parameters: Local MAP STAPLE. IEEE Trans. Medical Imaging 31(8): 1593-1606 (2012) - 2011
- [j34]Ali Gholipour, Judy A. Estroff, Carol E. Barnewolt, Susan A. Connolly, Simon K. Warfield:
Fetal brain volumetry through MRI volumetric reconstruction and segmentation. Int. J. Comput. Assist. Radiol. Surg. 6(3): 329-339 (2011) - [j33]Deanne K. Thompson, Terrie E. Inder, Nathan Faggian, Leigh A. Johnston, Simon K. Warfield, Peter J. Anderson, Lex W. Doyle, Gary F. Egan:
Characterization of the corpus callosum in very preterm and full-term infants utilizing MRI. NeuroImage 55(2): 479-490 (2011) - [j32]Ayelet Akselrod-Ballin, Davi Bock, R. Clay Reid, Simon K. Warfield:
Accelerating Image Registration With the Johnson-Lindenstrauss Lemma: Application to Imaging 3-D Neural Ultrastructure With Electron Microscopy. IEEE Trans. Medical Imaging 30(7): 1427-1438 (2011) - 2010
- [j31]Lara M. Vigneron, Romain Boman, Jean-Philippe Ponthot, Pierre Robe, Simon K. Warfield, Jacques G. Verly:
Enhanced FEM-based modeling of brain shift deformation in Image-Guided Neurosurgery. J. Comput. Appl. Math. 234(7): 2046-2053 (2010) - [j30]Jurgen Fripp, Stuart Crozier, Simon K. Warfield, Sébastien Ourselin:
Automatic Segmentation and Quantitative Analysis of the Articular Cartilages From Magnetic Resonance Images of the Knee. IEEE Trans. Medical Imaging 29(1): 55-64 (2010) - [j29]Olivier Commowick, Simon K. Warfield:
Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance From STAPLE. IEEE Trans. Medical Imaging 29(3): 771-780 (2010) - [j28]Ali Gholipour, Judy A. Estroff, Simon K. Warfield:
Robust Super-Resolution Volume Reconstruction From Slice Acquisitions: Application to Fetal Brain MRI. IEEE Trans. Medical Imaging 29(10): 1739-1758 (2010) - 2009
- [j27]Michiel Schaap, Coert Metz, Theo van Walsum, Alina G. van der Giessen, Annick C. Weustink, Nico Mollet, Christian Bauer, Hrvoje Bogunovic, Carlos Castro-Gonzalez, Xiang Deng, Engin Dikici, Thomas O'Donnell, Michel Frenay, Ola Friman, Marcela Hernández Hoyos, Pieter H. Kitslaar, Karl Krissian, Caroline Kühnel, Miguel A. Luengo-Oroz, Maciej Orkisz, Örjan Smedby, Martin Styner, Andrzej Szymczak, Hüseyin Tek, Chunliang Wang, Simon K. Warfield, Sebastian Zambal, Yong Zhang, Gabriel P. Krestin, Wiro J. Niessen:
Standardized evaluation methodology and reference database for evaluating coronary artery centerline extraction algorithms. Medical Image Anal. 13(5): 701-714 (2009) - [j26]Michael Rullmann, Alfred Anwander, Moritz Dannhauer, Simon K. Warfield, Frank H. Duffy, Carsten H. Wolters:
EEG source analysis of epileptiform activity using a 1 mm anisotropic hexahedra finite element head model. NeuroImage 44(2): 399-410 (2009) - [j25]Neil I. Weisenfeld, Simon K. Warfield:
Automatic segmentation of newborn brain MRI. NeuroImage 47(2): 564-572 (2009) - [j24]Olivier Commowick, Simon K. Warfield:
A Continuous STAPLE for Scalar, Vector, and Tensor Images: An Application to DTI Analysis. IEEE Trans. Medical Imaging 28(6): 838-846 (2009) - [j23]Mithun N. Prasad, Matthew S. Brown, Chiayi Ni, Daniel Margolis, Michael Douek, Sundaresan Raman, David Lu, Jonathan G. Goldin, Simon K. Warfield:
Reproducibility of Laplacian Wall Thickness Measurements of the Gallbladder with Varying CT Slice Thickness. J. Signal Process. Syst. 55(1-3): 67-75 (2009) - 2008
- [j22]Bhautik J. Joshi, Andriy Fedorov, Nikos Chrisochoides, Simon K. Warfield, Sébastien Ourselin:
A quantitative assessment of approaches to mesh generation for surgical simulation. Eng. Comput. 24(4): 417-430 (2008) - [j21]Mahnaz Maddah, W. Eric L. Grimson, Simon K. Warfield, William M. Wells III:
A unified framework for clustering and quantitative analysis of white matter fiber tracts. Medical Image Anal. 12(2): 191-202 (2008) - 2007
- [j20]Aloys du Bois d'Aische, Mathieu De Craene, Xavier Geets, Vincent Grégoire, Benoît Macq, Simon K. Warfield:
Estimation of the deformations induced by articulated bodies: Registration of the spinal column. Biomed. Signal Process. Control. 2(1): 16-24 (2007) - [j19]Silvia Alayón, Richard Robertson, Simon K. Warfield, Juan Ruiz-Alzola:
A fuzzy system for helping medical diagnosis of malformations of cortical development. J. Biomed. Informatics 40(3): 221-235 (2007) - [j18]Neculai Archip, Olivier Clatz, Stephen Whalen, Daniel F. Kacher, Andriy Fedorov, Andriy Kot, Nikos Chrisochoides, Ferenc A. Jolesz, Alexandra J. Golby, Peter M. Black, Simon K. Warfield:
Non-rigid alignment of pre-operative MRI, fMRI, and DT-MRI with intra-operative MRI for enhanced visualization and navigation in image-guided neurosurgery. NeuroImage 35(2): 609-624 (2007) - [j17]Andrea J. U. Mewes, Lilla Zöllei, Petra S. Hüppi, Heidelise Als, Gloria B. McAnulty, Terrie E. Inder, William M. Wells III, Simon K. Warfield:
Displacement of brain regions in preterm infants with non-synostotic dolichocephaly investigated by MRI. NeuroImage 36(4): 1074-1085 (2007) - [j16]Julien Dauguet, Sharon Peled, Vladimir Berezovskii, Thierry Delzescaux, Simon K. Warfield, Richard T. Born, Carl-Fredrik Westin:
Comparison of fiber tracts derived from in-vivo DTI tractography with 3D histological neural tract tracer reconstruction on a macaque brain. NeuroImage 37(2): 530-538 (2007) - 2006
- [j15]Ying Wu, Simon K. Warfield, I. Leng Tan, William M. Wells III, Dominik S. Meier, Ronald A. van Schijndel, Frederik Barkhof, Charles R. G. Guttmann:
Automated segmentation of multiple sclerosis lesion subtypes with multichannel MRI. NeuroImage 32(3): 1205-1215 (2006) - 2005
- [j14]Simon K. Warfield, Steven Haker, Ion-Florin Talos, Corey Kemper, Neil I. Weisenfeld, Andrea J. U. Mewes, Daniel Goldberg-Zimring, Kelly H. Zou, Carl-Fredrik Westin, William M. Wells III, Clare M. Tempany, Alexandra J. Golby, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis:
Capturing intraoperative deformations: research experience at Brigham and Women's hospital. Medical Image Anal. 9(2): 145-162 (2005) - [j13]Andy Tsai, William M. Wells III, Simon K. Warfield, Alan S. Willsky:
An EM algorithm for shape classification based on level sets. Medical Image Anal. 9(5): 491-502 (2005) - [j12]Aloys du Bois d'Aische, Mathieu De Craene, Xavier Geets, Vincent Grégoire, Benoît Macq, Simon K. Warfield:
Efficient multi-modal dense field non-rigid registration: alignment of histological and section images. Medical Image Anal. 9(6): 538-546 (2005) - [j11]Olivier Clatz, Maxime Sermesant, Pierre-Yves Bondiau, Hervé Delingette, Simon K. Warfield, Grégoire Malandain, Nicholas Ayache:
Realistic simulation of the 3-D growth of brain tumors in MR images coupling diffusion with biomechanical deformation. IEEE Trans. Medical Imaging 24(10): 1334-1346 (2005) - [j10]Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra J. Golby, Ron Kikinis, Ferenc A. Jolesz, Nicholas Ayache, Simon K. Warfield:
Robust nonrigid registration to capture brain shift from intraoperative MRI. IEEE Trans. Medical Imaging 24(11): 1417-1427 (2005) - 2004
- [j9]Vicente Grau, Andrea J. U. Mewes, Mariano Alcañiz Raya, Ron Kikinis, Simon K. Warfield:
Improved watershed transform for medical image segmentation using prior information. IEEE Trans. Medical Imaging 23(4): 447-458 (2004) - [j8]Simon K. Warfield, Kelly H. Zou, William M. Wells III:
Simultaneous truth and performance level estimation (STAPLE): an algorithm for the validation of image segmentation. IEEE Trans. Medical Imaging 23(7): 903-921 (2004) - 2003
- [j7]Sylvain Jaume, Matthieu Ferrant, Benoît Macq, Lennox Hoyte, Julia Fielding, Andreas Schreyer, Ron Kikinis, Simon K. Warfield:
Tumor detection in the bladder wall with a measurement of abnormal thickness in CT scans. IEEE Trans. Biomed. Eng. 50(3): 383-390 (2003) - 2002
- [j6]Juan Ruiz-Alzola, Carl-Fredrik Westin, Simon K. Warfield, Carlos Alberola-López, Stefan S. Maier, Ron Kikinis:
Nonrigid registration of 3D tensor medical data. Medical Image Anal. 6(2): 143-161 (2002) - [j5]Matthieu Ferrant, Arya Nabavi, Benoît Macq, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis, Simon K. Warfield:
Serial registration of intraoperative MR images of the brain. Medical Image Anal. 6(4): 337-359 (2002) - 2001
- [j4]Matthieu Ferrant, Arya Nabavi, Benoît Macq, Ferenc A. Jolesz, Ron Kikinis, Simon K. Warfield:
Registration of 3D Intraoperative MR Images of the Brain Using a Finite Element Biomechanical Model. IEEE Trans. Medical Imaging 20(12): 1384-1397 (2001) - 2000
- [j3]Simon K. Warfield, Michael Kaus, Ferenc A. Jolesz, Ron Kikinis:
Adaptive, template moderated, spatially varying statistical classification. Medical Image Anal. 4(1): 43-55 (2000) - 1998
- [j2]Simon K. Warfield, Ferenc A. Jolesz, Ron Kikinis:
A High Performance Computing Approach to the Registration of Medical Imaging Data. Parallel Comput. 24(9-10): 1345-1368 (1998) - 1996
- [j1]Simon K. Warfield:
Fast k-NN classification for multichannel image data. Pattern Recognit. Lett. 17(7): 713-721 (1996)
Conference and Workshop Papers
- 2025
- [c176]Zhengyong Huang, Hakim Ouaalam, Onur Afacan, Simon K. Warfield, Yao Sui:
Measuring T1 Relaxation Times at High Resolution from Rapid Brain MRI. ISBI 2025: 1-5 - 2022
- [c175]Yael Zaffrani-Reznikov, Onur Afacan, Sila Kurugol, Simon K. Warfield, Moti Freiman:
qDWI-Morph: Motion-Compensated Quantitative Diffusion-Weighted MRI Analysis for Fetal Lung Maturity Assessment. ECCV Workshops (3) 2022: 482-494 - [c174]Noam Korngut, Elad Rotman, Onur Afacan, Sila Kurugol, Yael Zaffrani-Reznikov, Shira Nemirovsky-Rotman, Simon K. Warfield, Moti Freiman:
SUPER-IVIM-DC: Intra-voxel Incoherent Motion Based Fetal Lung Maturity Assessment from Limited DWI Data Using Supervised Learning Coupled with Data-Consistency. MICCAI (2) 2022: 743-752 - [c173]Serge Vasylechko Didenko, Simon K. Warfield, Sila Kurugol, Onur Afacan:
SynthMap: a generative model for synthesis of 3D datasets for quantitative MRI parameter mapping of myelin water fraction. MIDL 2022: 1268-1284 - 2021
- [c172]Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield:
MRI Super-Resolution Through Generative Degradation Learning. MICCAI (6) 2021: 430-440 - 2020
- [c171]Seyhmus Guler, Burak Erem, Alexander Li Cohen, Onur Afacan, Simon K. Warfield:
Dynamic Missing-Data Completion Reduces Leakage of Motion Artifact Caused by Temporal Filtering that Remains After Scrubbing. ISBI 2020: 1-4 - [c170]Davood Karimi, Jurriaan M. Peters, Abdelhakim Ouaalam, Sanjay P. Prabhu, Mustafa Sahin, Darcy A. Krueger, Alexander Kolevzon, Charis Eng, Simon K. Warfield, Ali Gholipour:
Learning to Detect Brain Lesions from Noisy Annotations. ISBI 2020: 1910-1914 - [c169]Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield:
Learning a Gradient Guidance for Spatially Isotropic MRI Super-Resolution Reconstruction. MICCAI (2) 2020: 136-146 - 2019
- [c168]Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield:
Deep Plug-and-Play Prior for Parallel MRI Reconstruction. ICCV Workshops 2019: 3952-3958 - [c167]Yao Sui, Onur Afacan, Ali Gholipour, Simon K. Warfield:
Isotropic MRI Super-Resolution Reconstruction with Multi-scale Gradient Field Prior. MICCAI (3) 2019: 3-11 - [c166]Seyed Raein Hashemi, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour:
Exclusive Independent Probability Estimation using Deep 3D Fully Convolutional DenseNets: Application to IsoIntense Infant Brain MRI Segmentation. MIDL 2019: 260-272 - [c165]Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield:
Non-learning based deep parallel MRI reconstruction (NLDpMRI). Image Processing 2019: 1094904 - [c164]Xiao Wang, Venkatesh Sridhar, Zahra Ronaghi, Rollin C. Thomas, Jack Deslippe, Dilworth Parkinson, Gregery T. Buzzard, Samuel P. Midkiff, Charles A. Bouman, Simon K. Warfield:
Consensus equilibrium framework for super-resolution and extreme-scale CT reconstruction. SC 2019: 86:1-86:23 - 2018
- [c163]Tatsuya Yokota, Burak Erem, Seyhmus Guler, Simon K. Warfield, Hidekata Hontani:
Missing Slice Recovery for Tensors Using a Low-Rank Model in Embedded Space. CVPR 2018: 8251-8259 - [c162]Damon E. Hyde, Xavier Tomas-Fernandez, Scellig S. Stone, Jurriaan M. Peters, Simon K. Warfield:
A Comparison of Point and Complete Electrode Models in a Finite Difference Model of Invasive Electrode Measurements. EMBC 2018: 4677-4680 - [c161]Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Simon K. Warfield, Christian Barillot:
Multi-compartment model of brain tissues from T2 relaxometry MRI using gamma distribution. ISBI 2018: 141-144 - [c160]Seyed Sadegh Mohseni Salehi, Seyed Raein Hashemi, Clemente Velasco-Annis, Abdelhakim Ouaalam, Judy A. Estroff, Deniz Erdogmus, Simon K. Warfield, Ali Gholipour:
Real-time automatic fetal brain extraction in fetal MRI by deep learning. ISBI 2018: 720-724 - [c159]Marzieh Haghighi, Simon K. Warfield, Sila Kurugol:
Automatic renal segmentation in DCE-MRI using convolutional neural networks. ISBI 2018: 1534-1537 - [c158]Shadab Khan, Caitlin K. Rollins, Cynthia M. Ortinau, Onur Afacan, Simon K. Warfield, Ali Gholipour:
Tract-Specific Group Analysis in Fetal Cohorts Using in utero Diffusion Tensor Imaging. MICCAI (3) 2018: 28-35 - [c157]Sudhanya Chatterjee, Olivier Commowick, Onur Afacan, Simon K. Warfield, Christian Barillot:
Identification of Gadolinium Contrast Enhanced Regions in MS Lesions Using Brain Tissue Microstructure Information Obtained from Diffusion and T2 Relaxometry MRI. MICCAI (3) 2018: 63-71 - [c156]Aymeric Stamm, Olivier Commowick, Alessandra Menafoglio, Simon K. Warfield:
A Bayes Hilbert Space for Compartment Model Computing in Diffusion MRI. MICCAI (3) 2018: 72-80 - [c155]Jamshid Sourati, Ali Gholipour, Jennifer G. Dy, Sila Kurugol, Simon K. Warfield:
Active Deep Learning with Fisher Information for Patch-Wise Semantic Segmentation. DLMIA/ML-CDS@MICCAI 2018: 83-91 - [c154]Yechiel Lamash, Sila Kurugol, Simon K. Warfield:
Semi-automated Extraction of Crohns Disease MR Imaging Markers Using a 3D Residual CNN with Distance Prior. DLMIA/ML-CDS@MICCAI 2018: 218-226 - 2017
- [c153]Damon E. Hyde, Xavier Tomas-Fernandez, Scellig S. Stone, Jurriaan M. Peters, Simon K. Warfield:
Localization of stereo-electroencephalography signals using a finite difference complete electrode model. EMBC 2017: 3600-3603 - [c152]Benoit Scherrer, Maxime Taquet, Armin Schwartzman, Etienne St-Onge, Gaëtan Rensonnet, Sanjay P. Prabhu, Simon K. Warfield:
Decoupling Axial and Radial Tissue Heterogeneity in Diffusion Compartment Imaging. IPMI 2017: 440-452 - [c151]Sila Kurugol, Bahram Marami, Onur Afacan, Simon K. Warfield, Ali Gholipour:
Motion-Robust Spatially Constrained Parameter Estimation in Renal Diffusion-Weighted MRI by 3D Motion Tracking and Correction of Sequential Slices. CMMI/RAMBO/SWITCH@MICCAI 2017: 75-85 - 2016
- [c150]Damon E. Hyde, Moritz Dannhauer, Simon K. Warfield, Rob S. MacLeod, Dana H. Brooks:
Evaluation of numerical techniques for solving the current injection problem in biological tissues. ISBI 2016: 876-880 - [c149]Bahram Marami, Benoit Scherrer, Onur Afacan, Simon K. Warfield, Ali Gholipour:
Motion-Robust Reconstruction Based on Simultaneous Multi-slice Registration for Diffusion-Weighted MRI of Moving Subjects. MICCAI (3) 2016: 544-552 - [c148]Aymeric Stamm, Olivier Commowick, Simon K. Warfield, Simone Vantini:
Comprehensive Maximum Likelihood Estimation of Diffusion Compartment Models Towards Reliable Mapping of Brain Microstructure. MICCAI (3) 2016: 622-630 - 2015
- [c147]Benoit Scherrer, Onur Afacan, Maxime Taquet, Sanjay P. Prabhu, Ali Gholipour, Simon K. Warfield:
Accelerated High Spatial Resolution Diffusion-Weighted Imaging. IPMI 2015: 69-81 - [c146]Vahid Taimouri, Ali Gholipour, Clemente Velasco-Annis, Judy A. Estroff, Simon K. Warfield:
A template-to-slice block matching approach for automatic localization of brain in fetal MRI. ISBI 2015: 144-147 - [c145]Burak Erem, Damon Hyde, Jurriaan M. Peters, Frank H. Duffy, Dana H. Brooks, Simon K. Warfield:
Combined delay and graph embedding of epileptic discharges in EEG reveals complex and recurrent nonlinear dynamics. ISBI 2015: 347-350 - [c144]Vahid Taimouri, Sila Kurugol, Sean Clancy, Moti Freiman, Simon K. Warfield:
Structural and diffusion weighted MRI registration for biomarker fusion in Crohn's disease diagnosis. ISBI 2015: 592-595 - [c143]Renaud Hédouin, Olivier Commowick, Maxime Taquet, Elise Bannier, Benoit Scherrer, Simon K. Warfield, Christian Barillot:
Symmetric block-matching registration for the distortion correction of Echo-Planar images. ISBI 2015: 717-720 - [c142]Sila Kurugol, Moti Freiman, Onur Afacan, Liran Domachevsky, Jeannette M. Perez-Rossello, Michael J. Callahan, Simon K. Warfield:
Motion Compensated Abdominal Diffusion Weighted MRI by Simultaneous Image Registration and Model Estimation (SIR-ME). MICCAI (3) 2015: 501-509 - [c141]Aymeric Stamm, Jolene Singh, Onur Afacan, Simon K. Warfield:
Analytic Quantification of Bias and Variance of Coil Sensitivity Profile Estimators for Improved Image Reconstruction in MRI. MICCAI (2) 2015: 684-691 - [c140]Aymeric Stamm, Jolene Singh, Benoît Scherrer, Onur Afacan, Simon K. Warfield:
Multi-session complex averaging for high resolution high SNR 3T MR visualization of ex vivo hippocampus and insula. Image Processing 2015: 941328 - 2014
- [c139]Maxime Taquet, Jurriaan M. Peters, Simon K. Warfield:
Four Neuroimaging Questions that P-Values Cannot Answer (and Bayesian Analysis Can). BAMBI 2014: 95-106 - [c138]Maxime Taquet, Benoît Scherrer, Jurriaan M. Peters, Sanjay P. Prabhu, Simon K. Warfield:
A Fully Bayesian Inference Framework for Population Studies of the Brain Microstructure. MICCAI (1) 2014: 25-32 - [c137]Sila Kurugol, Moti Freiman, Onur Afacan, Jeannette M. Perez-Rossello, Michael J. Callahan, Simon K. Warfield:
Spatially-Constrained Probability Distribution Model of Incoherent Motion (SPIM) in Diffusion Weighted MRI Signals of Crohn's Disease. ABDI@MICCAI 2014: 117-127 - [c136]Alireza Akhondi Asl, Onur Afacan, Robert V. Mulkern, Simon K. Warfield:
T 2-Relaxometry for Myelin Water Fraction Extraction Using Wald Distribution and Extended Phase Graph. MICCAI (3) 2014: 145-152 - [c135]Subrahmanyam Gorthi, Alireza Akhondi Asl, Jean-Philippe Thiran, Simon K. Warfield:
Optimal MAP Parameters Estimation in STAPLE - Learning from Performance Parameters versus Image Similarity Information. MLMI 2014: 174-181 - [c134]Ali Gholipour, Catherine Limperopoulos, Sean Clancy, Cédric Clouchoux, Alireza Akhondi Asl, Judy A. Estroff, Simon K. Warfield:
Construction of a Deformable Spatiotemporal MRI Atlas of the Fetal Brain: Evaluation of Similarity Metrics and Deformation Models. MICCAI (2) 2014: 292-299 - 2013
- [c133]Benoit Scherrer, Maxime Taquet, Simon K. Warfield:
Reliable Selection of the Number of Fascicles in Diffusion Images by Estimation of the Generalization Error. IPMI 2013: 742-753 - [c132]Benoit Scherrer, Ralph O. Suarez, Simon K. Warfield:
Automatic delineation of white matter fascicles by localization based upon anatomical spatial relationships. ISBI 2013: 1146-1149 - [c131]Moti Freiman, Onur Afacan, Robert V. Mulkern, Simon K. Warfield:
Improved Multi B-Value Diffusion-Weighted MRI of the Body by Simultaneous Model Estimation and Image Reconstruction (SMEIR). MICCAI (3) 2013: 1-8 - [c130]Vahid Taimouri, Moti Freiman, Onur Afacan, Simon K. Warfield:
Spatially Constrained Incoherent Motion (SCIM) Model Improves Quantitative Diffusion-Weighted MRI Analysis of Crohn's Disease Patients. Abdominal Imaging 2013: 11-19 - [c129]Benoit Scherrer, Armin Schwartzman, Maxime Taquet, Sanjay P. Prabhu, Mustafa Sahin, Alireza Akhondi Asl, Simon K. Warfield:
Characterizing the DIstribution of Anisotropic MicrO-structural eNvironments with Diffusion-Weighted Imaging (DIAMOND). MICCAI (3) 2013: 518-526 - [c128]Maxime Taquet, Benoit Scherrer, Nicolas Boumal, Benoît Macq, Simon K. Warfield:
Estimation of a Multi-fascicle Model from Single B-Value Data with a Population-Informed Prior. MICCAI (1) 2013: 695-702 - 2012
- [c127]Benoit Scherrer, Simon K. Warfield:
Retrospective local artefacts detection in diffusion-weighted images using the Random Sample Consensus (RANSAC) paradigm. ISBI 2012: 546-549 - [c126]Maxime Taquet, Benoit Scherrer, Christopher Benjamin, Sanjay P. Prabhu, Benoît Macq, Simon K. Warfield:
Interpolating multi-fiber models by Gaussian mixture simplification. ISBI 2012: 928-931 - [c125]Alireza Akhondi Asl, Arne Hans, Benoit Scherrer, Jurriaan M. Peters, Simon K. Warfield:
Whole brain group network analysis using network bias and variance parameters. ISBI 2012: 1511-1514 - [c124]Xavier Tomas-Fernandez, Simon K. Warfield:
Population intensity outliers or a new model for brain WM abnormalities. ISBI 2012: 1543-1546 - [c123]Moti Freiman, Stephan D. Voss, Robert V. Mulkern, Jeannette M. Perez-Rossello, Michael J. Callahan, Simon K. Warfield:
Reliable Assessment of Perfusivity and Diffusivity from Diffusion Imaging of the Body. MICCAI (1) 2012: 1-9 - [c122]Maxime Taquet, Benoit Scherrer, Olivier Commowick, Jurriaan M. Peters, Mustafa Sahin, Benoît Macq, Simon K. Warfield:
Registration and Analysis of White Matter Group Differences with a Multi-fiber Model. MICCAI (3) 2012: 313-320 - [c121]Alireza Akhondi Asl, Simon K. Warfield:
Estimation of the Prior Distribution of Ground Truth in the STAPLE Algorithm: An Empirical Bayesian Approach. MICCAI (1) 2012: 593-600 - [c120]Maxime Taquet, Benoît Macq, Simon K. Warfield:
A generalized correlation coefficient: Application to DTI and multi-fiber DTI. MMBIA 2012: 9-14 - [c119]Benoit Scherrer, Ali Gholipour, Simon K. Warfield:
Super-resolution reconstruction of diffusion-weighted images from distortion compensated orthogonal anisotropic acquisitions. MMBIA 2012: 249-254 - [c118]Michael S. Hansen, Signe S. Thorup, Simon K. Warfield:
Polyaffine parametrization of image registration based on geodesic flows. MMBIA 2012: 289-295 - 2011
- [c117]Ali Gholipour, Martin Polak, André J. W. van der Kouwe, Erez Nevo, Simon K. Warfield:
Motion-robust MRI through real-time motion tracking and retrospective super-resolution volume reconstruction. EMBC 2011: 5722-5725 - [c116]Ali Gholipour, Nasser Kehtarnavaz, Benoit Scherrer, Simon K. Warfield:
On the accuracy of unwarping techniques for the correction of susceptibility-induced geometric distortion in magnetic resonance Echo-planar images. EMBC 2011: 6997-7000 - [c115]Neil I. Weisenfeld, Simon K. Warfield:
SoftSTAPLE: Truth and performance-level estimation from probabilistic segmentations. ISBI 2011: 441-446 - [c114]Ralph O. Suarez, Olivier Commowick, Xavier Tomas-Fernandez, Sanjay P. Prabhu, Simon K. Warfield:
Automated detection of white matter fiber bundles. ISBI 2011: 845-848 - [c113]Damon Hyde, Simon K. Warfield:
Anisotropic equivalent conductivity tensors for bioelectric modeling of partial volume effects in cerebrospinal fluid spaces. ISBI 2011: 1109-1112 - [c112]Moti Freiman, Stephan D. Voss, Simon K. Warfield:
Demons registration with local affine adaptive regularization: application to registration of abdominal structures. ISBI 2011: 1219-1222 - [c111]Xavier Tomas-Fernandez, Simon K. Warfield:
A new classifier feature space for an improved Multiple Sclerosis lesion segmentation. ISBI 2011: 1492-1495 - [c110]Alireza Akhondi Asl, Simon K. Warfield:
Cortical brain structures segmentation using constrained optimization and intensity coupling. ISBI 2011: 2022-2025 - [c109]Benoit Scherrer, Simon K. Warfield:
Toward an accurate multi-fiber assessment strategy for clinical practice. ISBI 2011: 2140-2143 - [c108]Moti Freiman, Stephan D. Voss, Robert V. Mulkern, Jeannette M. Perez-Rossello, Simon K. Warfield:
Quantitative Body DW-MRI Biomarkers Uncertainty Estimation Using Unscented Wild-Bootstrap. MICCAI (2) 2011: 74-81 - [c107]Avan Suinesiaputra, Brett R. Cowan, J. Paul Finn, Carissa G. Fonseca, Alan H. Kadish, Daniel C. Lee, Pau Medrano-Gracia, Simon K. Warfield, Wenchao Tao, Alistair A. Young:
Left Ventricular Segmentation Challenge from Cardiac MRI: A Collation Study. STACOM 2011: 88-97 - [c106]Moti Freiman, Stephan D. Voss, Simon K. Warfield:
Abdominal Images Non-rigid Registration Using Local-Affine Diffeomorphic Demons. Abdominal Imaging 2011: 116-124 - [c105]Benoit Scherrer, Ali Gholipour, Simon K. Warfield:
Super-Resolution in Diffusion-Weighted Imaging. MICCAI (2) 2011: 124-132 - [c104]Neil I. Weisenfeld, Simon K. Warfield:
Learning Likelihoods for Labeling (L3): A General Multi-Classifier Segmentation Algorithm. MICCAI (3) 2011: 322-329 - [c103]Maxime Taquet, Benoît Macq, Simon K. Warfield:
Spatially Adaptive Log-Euclidean Polyaffine Registration Based on Sparse Matches. MICCAI (2) 2011: 590-597 - 2010
- [c102]Damon Hyde, Simon K. Warfield:
Controllable spatio-temporal smoothness constraints for EEG source localization. ISBI 2010: 828-831 - [c101]Firdaus Janoos, Raghu Machiraju, Steffen Sammet, Michael V. Knopp, Simon K. Warfield, István Ákos Mórocz:
Measuring effects of latency in brain activity with FMRI. ISBI 2010: 1141-1144 - [c100]Benoit Scherrer, Simon K. Warfield:
Why multiple b-values are required for multi-tensor models: evaluation with a constrained log-Euclidean model. ISBI 2010: 1389-1392 - [c99]Olivier Commowick, Simon K. Warfield:
Incorporating Priors on Expert Performance Parameters for Segmentation Validation and Label Fusion: A Maximum a Posteriori STAPLE. MICCAI (3) 2010: 25-32 - [c98]Ali Gholipour, Judy A. Estroff, Mustafa Sahin, Sanjay P. Prabhu, Simon K. Warfield:
Maximum A Posteriori Estimation of Isotropic High-Resolution Volumetric MRI from Orthogonal Thick-Slice Scans. MICCAI (2) 2010: 109-116 - 2009
- [c97]Olivier Commowick, Simon K. Warfield:
Estimation of Inferential Uncertainty in Assessing Expert Segmentation Performance from Staple. IPMI 2009: 701-712 - [c96]Neil I. Weisenfeld, Simon K. Warfield:
A Data-Driven Approach to Discovering Common Brain Anatomy. ISBI 2009: 217-220 - [c95]Ayelet Akselrod-Ballin, Davi Bock, R. Clay Reid, Simon K. Warfield:
Improved Registration for Large Electron Microscopy Images. ISBI 2009: 434-437 - [c94]Grand Roman Joldes, Adam Wittek, Mathieu Couton, Simon K. Warfield, Karol Miller:
Real-Time Prediction of Brain Shift Using Nonlinear Finite Element Algorithms. MICCAI (1) 2009: 300-307 - [c93]Ayelet Akselrod-Ballin, Davi Bock, R. Clay Reid, Simon K. Warfield:
Accelerating Feature Based Registration Using the Johnson-Lindenstrauss Lemma. MICCAI (1) 2009: 632-639 - [c92]Olivier Commowick, Simon K. Warfield, Grégoire Malandain:
Using Frankenstein's Creature Paradigm to Build a Patient Specific Atlas. MICCAI (1) 2009: 993-1000 - 2008
- [c91]Julien Dauguet, Simon K. Warfield, Edward Bromfield, Alexandra J. Golby, Jong Woo Lee:
Comparison of the deformations of brain tissues caused by tumor in seizure and non-seizure patients. ISBI 2008: 1143-1146 - [c90]Andriy Fedorov, Eric Billet, Marcel Prastawa, Guido Gerig, Alireza Radmanesh, Simon K. Warfield, Ron Kikinis, Nikos Chrisochoides:
Evaluation of Brain MRI Alignment with the Robust Hausdorff Distance Measures. ISVC (1) 2008: 594-603 - [c89]Ziga Spiclin, Arne Hans, Frank H. Duffy, Simon K. Warfield, Bostjan Likar, Franjo Pernus:
EEG to MRI Registration Based on Global and Local Similarities of MRI Intensity Distributions. MICCAI (1) 2008: 762-770 - [c88]Olivier Commowick, Pierre Fillard, Olivier Clatz, Simon K. Warfield:
Detection of DTI White Matter Abnormalities in Multiple Sclerosis Patients. MICCAI (1) 2008: 975-982 - 2007
- [c87]Nikos Chrisochoides, Andriy Fedorov, Andriy Kot, Neculai Archip, Daniel Goldberg-Zimring, Daniel F. Kacher, Stephen Whalen, Ron Kikinis, Ferenc A. Jolesz, Olivier Clatz, Simon K. Warfield, Peter M. Black, Alexandra J. Golby:
Grid-Enabled Software Environment for Enhanced Dynamic Data-Driven Visualization and Navigation During Image-Guided Neurosurgery. International Conference on Computational Science (1) 2007: 980-987 - [c86]Mahnaz Maddah, William M. Wells III, Simon K. Warfield, Carl-Fredrik Westin, W. Eric L. Grimson:
Probabilistic Clustering and Quantitative Analysis of White Matter Fiber Tracts. IPMI 2007: 372-383 - [c85]F. Javier Sánchez Castro, Olivier Clatz, Julien Dauguet, Neculai Archip, Jean-Philippe Thiran, Simon K. Warfield:
Evaluation of Brain Image Nonrigid Registration Algorithms Based on Log-euclidean Mr-dti Consistency Measures. ISBI 2007: 45-48 - [c84]Jurgen Fripp, Sébastien Ourselin, Simon K. Warfield, Stuart Crozier:
Automatic Segmentation of the Bones from Mr Images of The Knee. ISBI 2007: 336-339 - [c83]Bhautik J. Joshi, Andriy Fedorov, Nikos Chrisochoides, Simon K. Warfield, Sébastien Ourselin:
Application-Driven Quantitative Assessment of Approaches to Mesh Generation. ISBI 2007: 1160-1163 - [c82]Jurgen Fripp, Stuart Crozier, Simon K. Warfield, Sébastien Ourselin:
Automatic Segmentation of Articular Cartilage in Magnetic Resonance Images of the Knee. MICCAI (2) 2007: 186-194 - [c81]Julien Dauguet, Davi Bock, R. Clay Reid, Simon K. Warfield:
Alignment of Large Image Series Using Cubic B-Splines Tessellation: Application to Transmission Electron Microscopy Data. MICCAI (2) 2007: 710-717 - [c80]Neculai Archip, Servet Tatli, Paul R. Morrison, Ferenc A. Jolesz, Simon K. Warfield, Stuart G. Silverman:
Non-rigid Registration of Pre-procedural MR Images with Intra-procedural Unenhanced CT Images for Improved Targeting of Tumors During Liver Radiofrequency Ablations. MICCAI (2) 2007: 969-977 - 2006
- [c79]Tharaka Devadithya, Kim K. Baldridge, Adam Birnbaum, Amitava Majumdar, Dong Ju Choi, Richard Wolski, Simon K. Warfield, Neculai Archip:
On-Demand High Performance Computing: Image Guided Neuro-Surgery Feasibility Study. ICPADS (2) 2006: 97-102 - [c78]Jurgen Fripp, Simon K. Warfield, Stuart Crozier, Sébastien Ourselin:
Automatic Segmentation of the Knee Bones using 3D Active Shape Models. ICPR (1) 2006: 167-170 - [c77]Mahnaz Maddah, W. Eric L. Grimson, Simon K. Warfield:
Statistical modeling and EM clustering of white matter fiber tracts. ISBI 2006: 53-56 - [c76]Andriy Fedorov, Nikos Chrisochoides, Ron Kikinis, Simon K. Warfield:
An evaluation of three approaches to tetrahedral mesh generation for deformable registration of brain MR images. ISBI 2006: 658-661 - [c75]Neil I. Weisenfeld, Andrea J. U. Mewes, Simon K. Warfield:
Segmentation of newborn brain MRI. ISBI 2006: 766-769 - [c74]Julien Dauguet, Sharon Peled, Vladimir Berezovskii, Thierry Delzescaux, Simon K. Warfield, Richard T. Born, Carl-Fredrik Westin:
3D Histological Reconstruction of Fiber Tracts and Direct Comparison with Diffusion Tensor MRI Tractography. MICCAI (1) 2006: 109-116 - [c73]Neil I. Weisenfeld, Andrea J. U. Mewes, Simon K. Warfield:
Highly Accurate Segmentation of Brain Tissue and Subcortical Gray Matter from Newborn MRI. MICCAI (1) 2006: 199-206 - [c72]Simon K. Warfield, Kelly H. Zou, William M. Wells III:
Validation of Image Segmentation by Estimating Rater Bias and Variance. MICCAI (2) 2006: 839-847 - [c71]Neculai Archip, Andriy Fedorov, Bryn Lloyd, Nikos Chrisochoides, Alexandra J. Golby, Peter M. Black, Simon K. Warfield:
Integration of patient specific modeling and advanced image processing techniques for image-guided neurosurgery. Image-Guided Procedures 2006: 61411E - [c70]Lara M. Vigneron, Pierre A. Robe, Simon K. Warfield, Jacques G. Verly:
XFEM-based modeling of successive resections for preoperative image updating. Image-Guided Procedures 2006: 61411C - [c69]Jurgen Fripp, Stuart Crozier, Simon K. Warfield, Sébastien Ourselin:
A subdivision-based parametric deformable model for surface extraction and statistical shape modeling of the knee cartilages. Image-Guided Procedures 2006: 614123 - [c68]Nikos Chrisochoides, Andriy Fedorov, Andriy Kot, Neculai Archip, Peter M. Black, Olivier Clatz, Alexandra J. Golby, Ron Kikinis, Simon K. Warfield:
Imaging and visual analysis - Toward real-time image guided neurosurgery using distributed and grid computing. SC 2006: 76 - 2005
- [c67]Jurgen Fripp, Pierrick Bourgeat, Andrea J. U. Mewes, Simon K. Warfield, Stuart Crozier, Sébastien Ourselin:
3D Statistical Shape Models to Embed Spatial Relationship Information. CVBIA 2005: 51-60 - [c66]Simon K. Warfield:
Medical Image Analysis for Image Guided Therapy. DICTA 2005: 42 - [c65]Jurgen Fripp, Stuart Crozier, Simon K. Warfield, Sébastien Ourselin:
Automatic Initialization of 3D Deformable Models for Cartilage Segmentation. DICTA 2005: 74 - [c64]Amitava Majumdar, Adam Birnbaum, Dong Ju Choi, Abhishek Trivedi, Simon K. Warfield, Kim K. Baldridge, Petr Krysl:
A Dynamic Data Driven Grid System for Intra-operative Image Guided Neurosurgery. International Conference on Computational Science (2) 2005: 672-679 - [c63]Aloys du Bois d'Aische, Mathieu De Craene, Benoît Macq, Simon K. Warfield:
An articulated registration method. ICIP (1) 2005: 21-24 - [c62]Mathieu De Craene, Aloys du Bois d'Aische, Benoît Macq, Simon K. Warfield:
Multi-subject variational registration for probabilistic unbiased atlas generation. ICIP (3) 2005: 601-604 - [c61]Mahnaz Maddah, Andrea J. U. Mewes, Steven Haker, W. Eric L. Grimson, Simon K. Warfield:
Automated Atlas-Based Clustering of White Matter Fiber Tracts from DTMRI. MICCAI 2005: 188-195 - [c60]Olivier Clatz, Hervé Delingette, Ion-Florin Talos, Alexandra J. Golby, Ron Kikinis, Ferenc A. Jolesz, Nicholas Ayache, Simon K. Warfield:
Hybrid Formulation of the Model-Based Non-rigid Registration Problem to Improve Accuracy and Robustness. MICCAI (2) 2005: 295-302 - [c59]Steven Haker, William M. Wells III, Simon K. Warfield, Ion-Florin Talos, Jui G. Bhagwat, Daniel Goldberg-Zimring, Asim Mian, Lucila Ohno-Machado, Kelly H. Zou:
Combining Classifiers Using Their Receiver Operating Characteristics and Maximum Likelihood Estimation. MICCAI 2005: 506-514 - [c58]Adam Wittek, Ron Kikinis, Simon K. Warfield, Karol Miller:
Brain Shift Computation Using a Fully Nonlinear Biomechanical Model. MICCAI (2) 2005: 583-590 - [c57]Neculai Archip, Robert Rohling, Peter Cooperberg, Hamid Tahmasebpour, Simon K. Warfield:
Spectral Clustering Algorithms for Ultrasound Image Segmentation. MICCAI (2) 2005: 862-869 - 2004
- [c56]Christian P. Zentai, Daniel Worku, Kemal Tuncali, Kelly H. Zou, Paul R. Morrison, Simon K. Warfield, R. M. M. Seibel, Stuart G. Silverman:
Validation of 3D assessment of MR imaging-guided percutaneous cryotherapy of a soft-tissue metastasis. CARS 2004: 313-317 - [c55]Neil I. Weisenfeld, Simon K. Warfield:
Normalization of Joint Image-Intensity Statistics in MRI using the Kullback-Leibler Divergence. ISBI 2004: 101-104 - [c54]Mathieu De Craene, Aloys du Bois d'Aische, Benoît Macq, Florian Kipfmueller, Neil I. Weisenfeld, Steven Haker, Simon K. Warfield:
Multi-Modal Non-Rigid Registration Using a Stochastic Gradient Approximation. ISBI 2004: 1459-1462 - [c53]Lara M. Vigneron, Jacques G. Verly, Simon K. Warfield:
On Extended Finite Element Method (XFEM) for Modelling of Organ Deformations Associated with Surgical Cuts. ISMS 2004: 134-143 - [c52]Andy Tsai, William M. Wells III, Simon K. Warfield, Alan S. Willsky:
Level Set Methods in an EM Framework for Shape Classification and Estimation. MICCAI (1) 2004: 1-9 - [c51]Kilian M. Pohl, Simon K. Warfield, Ron Kikinis, W. Eric L. Grimson, William M. Wells III:
Coupling Statistical Segmentation and PCA Shape Modeling. MICCAI (1) 2004: 151-159 - [c50]Corey Kemper, Ion-Florin Talos, Alexandra J. Golby, Peter M. Black, Ron Kikinis, W. Eric L. Grimson, Simon K. Warfield:
An Anisotropic Material Model for Image Guided Neurosurgery. MICCAI (2) 2004: 267-275 - [c49]Mahnaz Maddah, Kelly H. Zou, William M. Wells III, Ron Kikinis, Simon K. Warfield:
Automatic Optimization of Segmentation Algorithms Through Simultaneous Truth and Performance Level Estimation (STAPLE). MICCAI (1) 2004: 274-282 - [c48]Lara M. Vigneron, Jacques G. Verly, Simon K. Warfield:
Modelling Surgical Cuts, Retractions, and Resections via Extended Finite Element Method. MICCAI (2) 2004: 311-318 - [c47]Olivier Clatz, Pierre-Yves Bondiau, Hervé Delingette, Grégoire Malandain, Maxime Sermesant, Simon K. Warfield, Nicholas Ayache:
In Silico Tumor Growth: Application to Glioblastomas. MICCAI (2) 2004: 337-345 - [c46]Mathieu De Craene, Aloys du Bois d'Aische, Benoît Macq, Simon K. Warfield:
: Multi-subject Registration for Unbiased Statistical Atlas Construction. MICCAI (1) 2004: 655-662 - [c45]Kelly H. Zou, Douglas N. Greve, Meng Wang, Steven D. Pieper, Simon K. Warfield, Nathan S. White, Mark G. Vangel, Ron Kikinis, William M. Wells III, First Birn:
A Prospective Multi-institutional Study of the Reproducibility of fMRI: A Preliminary Report from the Biomedical Informatics Research Network. MICCAI (2) 2004: 769-776 - [c44]Aloys du Bois d'Aische, Mathieu De Craene, Steven Haker, Neil I. Weisenfeld, Clare M. Tempany, Benoît Macq, Simon K. Warfield:
Improved Non-rigid Registration of Prostate MRI. MICCAI (1) 2004: 845-852 - [c43]Steven Haker, Simon K. Warfield, Clare M. Tempany:
Landmark-Guided Surface Matching and Volumetric Warping for Improved Prostate Biopsy Targeting and Guidance. MICCAI (1) 2004: 853-861 - [c42]Mathieu S. De Craene, Aloys du Bois d'Aische, Ion-Florin Talos, Matthieu Ferrant, Peter McL. Black, Ferenc A. Jolesz, Ron Kikinis, Benoît Macq, Simon K. Warfield:
Dense deformation field estimation for brain intraoperative images registration. Image Processing 2004 - 2003
- [c41]Rubén Cárdenes, Simon K. Warfield, Elsa M. Macías, Jose Aurelio Santana, Juan Ruiz-Alzola:
An Efficient Algorithm for Multiple Sclerosis Segmentation from Brain MRI. EUROCAST 2003: 542-551 - [c40]Rubén Cárdenes, Simon K. Warfield, Elsa M. Macías, Juan Ruiz-Alzola:
Occlusion points propagation geodesic distance transformation. ICIP (1) 2003: 361-364 - [c39]Rubén Cárdenes, Simon K. Warfield, Andrea J. U. Mewes, Juan Ruiz-Alzola:
K-Voronoi diagrams computing in arbitrary domains. ICIP (2) 2003: 941-944 - [c38]Simon K. Warfield, Ion-Florin Talos, Corey Kemper, Lauren O'Donnell, Carl-Fredrik Westin, William M. Wells III, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis:
Capturing Brain Deformation. IS4TH 2003: 203-217 - [c37]Ion-Florin Talos, Lauren O'Donnell, Carl-Fredrik Westin, Simon K. Warfield, William M. Wells III, Seung-Schik Yoo, Lawrence P. Panych, Alexandra J. Golby, Hatsuho Mamata, Stefan S. Maier, Peter Ratiu, Charles R. G. Guttmann, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis:
Diffusion Tensor and Functional MRI Fusion with Anatomical MRI for Image-Guided Neurosurgery. MICCAI (1) 2003: 407-415 - [c36]Juan Ruiz-Alzola, Eduardo Suárez, Carlos Alberola-López, Simon K. Warfield, Carl-Fredrik Westin:
Geostatistical Medical Image Registration. MICCAI (2) 2003: 894-901 - [c35]Simon Keith Warfield, Ion-Florin Talos, Corey Kemper, Eric Richard Cosman, Alida Tei, Matthieu Ferrant, Benoît Macq, William M. Wells III, Peter McLaren Black, Ferenc A. Jolesz, Ron Kikinis:
Augmenting intraoperative MRI with preoperative fMRI and DTI by biomechanical simulation of brain deformation. Image-Guided Procedures 2003 - [c34]Gjenna Stippel, James Ellsmere, Simon K. Warfield, William M. Wells III, Wilfried Philips:
A New Technique for Multi-modal 3D Image Registration. WBIR 2003: 244-253 - 2002
- [c33]Jan Rexilius, Heinz Handels, Arya Nabavi, Ron Kikinis, Simon K. Warfield:
Automatic Nonrigid Registration for Tracking Brain Shift During Neurosurgery. Bildverarbeitung für die Medizin 2002: 135-138 - [c32]J. F. Verhey, A. Ludwig, Jan Rexilius, Simon K. Warfield, C. T. Mamisch, Ron Kikinis, Carl-Fredrik Westin, R. M. M. Seibel, Otto Rienhoff:
Multimodale nicht-rigide Registrierung von Ultraschall und MR-Bilddaten unter Verwendung eines biomechanischen Modells. Bildverarbeitung für die Medizin 2002: 310-313 - [c31]Simon K. Warfield, Kelly H. Zou, Michael Kaus, William M. Wells III:
Simultaneous validation of image segmentation and assessment of expert quality [tumor MRI application]. ISBI 2002: 94-97 - [c30]Alexandre Guimond, Charles R. G. Guttmann, Simon K. Warfield, Carl-Fredrik Westin:
Deformable registration of DT-MRI data based on transformation invariant tensor characteristics. ISBI 2002: 761-764 - [c29]Simon K. Warfield, Kelly H. Zou, William M. Wells III:
Validation of Image Segmentation and Expert Quality with an Expectation-Maximization Algorithm. MICCAI (1) 2002: 298-306 - [c28]Kelly H. Zou, William M. Wells III, Michael Kaus, Ron Kikinis, Ferenc A. Jolesz, Simon K. Warfield:
Statistical Validation of Automated Probabilistic Segmentation against Composite Latent Expert Ground Truth in MR Imaging of Brain Tumors. MICCAI (1) 2002: 315-322 - [c27]Sylvain Jaume, Benoît Macq, Simon K. Warfield:
Labeling the Brain Surface Using a Deformable Multiresolution Mesh. MICCAI (1) 2002: 451-458 - [c26]Kilian M. Pohl, William M. Wells III, Alexandre Guimond, Kiyoto Kasai, Martha Elizabeth Shenton, Ron Kikinis, W. Eric L. Grimson, Simon K. Warfield:
Incorporating Non-rigid Registration into Expectation Maximization Algorithm to Segment MR Images. MICCAI (1) 2002: 564-571 - 2001
- [c25]Ron Kikinis, Ion-Florin Talos, Simon K. Warfield, Arya Nabavi, David G. Walker, Ferenc A. Jolesz, Peter M. Black:
High Performance Computing in Image Guided Therapy: Computer Assisted Three-Dimensional Planning and Real-Time Navigation for Neurosurgical Procedures. Bildverarbeitung für die Medizin 2001: 3-15 - [c24]Simon K. Warfield, Jan Rexilius, Petra S. Huppi, Terrie E. Inder, Erik G. Miller, William M. Wells III, Gary P. Zientara, Ferenc A. Jolesz, Ron Kikinis:
A Binary Entropy Measure to Assess Nonrigid Registration Algorithms. MICCAI 2001: 266-274 - [c23]Jan Rexilius, Simon K. Warfield, Charles R. G. Guttmann, X. Wei, R. Benson, L. Wolfson, Martha Elizabeth Shenton, Heinz Handels, Ron Kikinis:
A Novel Nonrigid Registration Algorithm and Applications. MICCAI 2001: 923-931 - [c22]Chahin Pachai, Yue Min Zhu, Charles R. G. Guttmann, Ron Kikinis, Ferenc A. Jolesz, Gérard Gimenez, Jean-Claude Froment, Christian Confavreux, Simon K. Warfield:
Unsupervised and Adaptive Segmentation of Multispectral 3D Magnetic Resonance Images of Human Brain: A Generic Approach. MICCAI 2001: 1067-1074 - [c21]Matthieu Ferrant, Olivier Cuisenaire, Benoît Macq, Jean-Philippe Thiran, Martha Elizabeth Shenton, Ron Kikinis, Simon K. Warfield:
Surface Based Atlas Matching of the Brain Using Deformable Surfaces and Volumetric Finite Elements. MICCAI 2001: 1352-1353 - [c20]Sylvain Jaume, Matthieu Ferrant, Andreas Schreyer, Lennox Hoyte, Benoît Macq, Julia Fielding, Ron Kikinis, Simon K. Warfield:
Multiresolution Signal Processing on Meshes for Automatic Pathological Shape Characterization. MICCAI 2001: 1398-1400 - [c19]Rubén Cárdenes-Almeida, Juan Ruiz-Alzola, Ron Kikinis, Simon Keith Warfield:
Medical image segmentation using high-performance computer clusters. Image-Guided Procedures 2001 - [c18]Matthieu Ferrant, Arya Nabavi, Benoît Macq, Ron Kikinis, Simon Keith Warfield:
Real-time simulation and visualization of volumetric brain deformation for image-guided neurosurgery. Image-Guided Procedures 2001 - [c17]Sylvain Jaume, Matthieu Ferrant, Simon Keith Warfield, Benoît Macq:
Multiresolution parameterization of meshes for improved surface-based registration. Image Processing 2001 - 2000
- [c16]Matthieu Ferrant, Benoît Macq, Arya Nabavi, Simon K. Warfield:
Deformable Modeling for Characterizing Biomedical Shape Changes. DGCI 2000: 235-248 - [c15]Michael Kaus, Arya Nabavi, C. T. Mamisch, William M. Wells III, Ferenc A. Jolesz, Ron Kikinis, Simon K. Warfield:
Simulation of Corticospinal Tract Displacement in Patients with Brain Tumors. MICCAI 2000: 9-18 - [c14]Matthieu Ferrant, Simon K. Warfield, Arya Nabavi, Ferenc A. Jolesz, Ron Kikinis:
Registration of 3D Intraoperative MR Images of the Brain Using a Finite Element Biomechanical Model. MICCAI 2000: 19-28 - [c13]Simon K. Warfield, Arya Nabavi, Torsten Butz, Kemal Tuncali, Stuart G. Silverman, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis:
Intraoperative Segmentation and Nonrigid Registration for Image Guided Therapy. MICCAI 2000: 176-185 - [c12]Torsten Butz, Simon K. Warfield, Kemal Tuncali, Stuart G. Silverman, Eric van Sonnenberg, Ferenc A. Jolesz, Ron Kikinis:
Pre- and Intra-operative Planning and Simulation of Percutaneous Tumor Ablation. MICCAI 2000: 317-326 - [c11]Juan Ruiz-Alzola, Carl-Fredrik Westin, Simon K. Warfield, Arya Nabavi, Ron Kikinis:
Nonrigid Registration of 3D Scalar, Vector and Tensor Medical Data. MICCAI 2000: 541-550 - [c10]Simon K. Warfield, Matthieu Ferrant, Xavier Gallez, Arya Nabavi, Ferenc A. Jolesz, Ron Kikinis:
Real-Time Biomechanical Simulation of Volumetric Brain Deformation for Image Guided Neurosurgery. SC 2000: 23 - 1999
- [c9]Michael Kaus, Simon K. Warfield, Ferenc A. Jolesz, Ron Kikinis:
Adaptive Template Moderated Brain Tumor Segmentation in MRI. Bildverarbeitung für die Medizin 1999: 102-106 - [c8]Michael Kaus, Simon K. Warfield, Arya Nabavi, E. Chatzidakis, Peter M. Black, Ferenc A. Jolesz, Ron Kikinis:
Segmentation of Meningiomas and Low Grade Gliomas in MRI. MICCAI 1999: 1-10 - [c7]Simon K. Warfield, Carl-Fredrik Westin, Charles R. G. Guttmann, Marilyn S. Albert, Ferenc A. Jolesz, Ron Kikinis:
Fractional Segmentation of White Matter. MICCAI 1999: 62-71 - [c6]Matthieu Ferrant, Simon K. Warfield, Charles R. G. Guttmann, Robert V. Mulkern, Ferenc A. Jolesz, Ron Kikinis:
3D Image Matching Using a Finite Element Based Elastic Deformation Model. MICCAI 1999: 202-209 - [c5]Nobuhiko Hata, Arya Nabavi, Simon K. Warfield, William M. Wells III, Ron Kikinis, Ferenc A. Jolesz:
A Volumetric Optical Flow Method for Measurement of Brain Deformation from Intraoperative Magnetic Resonance Images. MICCAI 1999: 928-935 - 1998
- [c4]Simon K. Warfield, Michael Kaus, Ferenc A. Jolesz, Ron Kikinis:
Adaptive Template Moderated Spatially Varying Statistical Classification. MICCAI 1998: 431-438 - [c3]Nobuhiko Hata, Takeyoshi Dohi, Simon K. Warfield, William M. Wells III, Ron Kikinis, Ferenc A. Jolesz:
Multimodality Deformable Registration of Pre- and Intraoperative Images for MRI-guided Brain Surgery. MICCAI 1998: 1067-1074 - [c2]Carl-Fredrik Westin, Simon K. Warfield, Abhir Bhalerao, L. Mui, Jens A. Richolt, Ron Kikinis:
Tensor Controlled Local Structure Enhancement of CT Images for Bone Segmentation. MICCAI 1998: 1205-1212 - [c1]Simon K. Warfield, Ferenc A. Jolesz, Ron Kikinis:
Real-Time Image Segmentation for Image-Guided Surgery. SC 1998: 42
Parts in Books or Collections
- 2015
- [p1]Maxime Taquet, Benoit Scherrer, Simon K. Warfield:
A Framework for the Analysis of Diffusion Compartment Imaging (DCI). Visualization and Processing of Higher Order Descriptors for Multi-Valued Data 2015: 271-297
Editorship
- 2013
- [e1]Hiroyuki Yoshida, Simon K. Warfield, Michael W. Vannier:
Abdominal Imaging. Computation and Clinical Applications - 5th International Workshop, Held in Conjunction with MICCAI 2013, Nagoya, Japan, September 22, 2013. Proceedings. Lecture Notes in Computer Science 8198, Springer 2013, ISBN 978-3-642-41082-6 [contents]
Data and Artifacts
- 2022
- [d1]Benjamin F. Zwick, Saima Safdar, George C. Bourantas, Grand R. Joldes, Damon E. Hyde, Simon K. Warfield, Adam Wittek, Karol Miller:
Data for patient-specific solution of the electrocorticography forward problem in deforming brain. Zenodo, 2022
Informal and Other Publications
- 2025
- [i26]Bo Li, Qi Zeng, Simon K. Warfield, Davood Karimi:
FetDTIAlign: A Deep Learning Framework for Affine and Deformable Registration of Fetal Brain dMRI. CoRR abs/2502.01057 (2025) - 2024
- [i25]Noga Kertes, Yael Zaffrani-Reznikov, Onur Afacan, Sila Kurugol, Simon K. Warfield, Moti Freiman:
IVIM-Morph: Motion-compensated quantitative Intra-voxel Incoherent Motion (IVIM) analysis for functional fetal lung maturity assessment from diffusion-weighted MRI data. CoRR abs/2401.07126 (2024) - [i24]Camilo Calixto, Camilo Jaimes, Matheus D. Soldatelli, Simon K. Warfield, Ali Gholipour, Davood Karimi:
Anatomically Constrained Tractography of the Fetal Brain. CoRR abs/2403.02444 (2024) - [i23]Samah Khawaled, Simon K. Warfield, Moti Freiman:
A self-attention model for robust rigid slice-to-volume registration of functional MRI. CoRR abs/2404.04546 (2024) - [i22]Weide Liu, Camilo Calixto, Simon K. Warfield, Davood Karimi:
Streamline tractography of the fetal brain in utero with machine learning. CoRR abs/2408.14326 (2024) - [i21]Davood Karimi, Camilo Calixto, Haykel Snoussi, Maria Camila Cortes-Albornoz, Clemente Velasco-Annis, Caitlin K. Rollins, Camilo Jaimes, Ali Gholipour, Simon K. Warfield:
Detailed delineation of the fetal brain in diffusion MRI via multi-task learning. CoRR abs/2409.06716 (2024) - 2023
- [i20]Rui Nian, Guoyao Zhang, Yao Sui, Yuqi Qian, Qiuying Li, Mingzhang Zhao, Jianhui Li, Ali Gholipour, Simon K. Warfield:
3D Brainformer: 3D Fusion Transformer for Brain Tumor Segmentation. CoRR abs/2304.14508 (2023) - 2022
- [i19]Can Taylan Sari, Sila Kurugol, Onur Afacan, Simon K. Warfield:
CORPS: Cost-free Rigorous Pseudo-labeling based on Similarity-ranking for Brain MRI Segmentation. CoRR abs/2205.09601 (2022) - [i18]Noam Korngut, Elad Rotman, Onur Afacan, Sila Kurugol, Yael Zaffrani-Reznikov, Shira Nemirovsky-Rotman, Simon K. Warfield, Moti Freiman:
SUPER-IVIM-DC: Intra-voxel incoherent motion based Fetal lung maturity assessment from limited DWI data using supervised learning coupled with data-consistency. CoRR abs/2206.03820 (2022) - [i17]Saima Safdar, Benjamin Zwick, George C. Bourantas, Grand R. Joldes, Damon Hyde, Simon K. Warfield, Adam Wittek, Karol Miller:
Automated modeling of brain bioelectric activity within the 3D Slicer environment. CoRR abs/2208.01747 (2022) - [i16]Yael Zaffrani-Reznikov, Onur Afacan, Sila Kurugol, Simon K. Warfield, Moti Freiman:
qDWI-Morph: Motion-compensated quantitative Diffusion-Weighted MRI analysis for fetal lung maturity assessment. CoRR abs/2208.09836 (2022) - 2021
- [i15]Davood Karimi, Simon K. Warfield, Ali Gholipour:
Calibrated Diffusion Tensor Estimation. CoRR abs/2111.10847 (2021) - 2020
- [i14]Davood Karimi, Simon K. Warfield, Ali Gholipour:
Critical Assessment of Transfer Learning for Medical Image Segmentation with Fully Convolutional Neural Networks. CoRR abs/2006.00356 (2020) - [i13]Davood Karimi, Lana Vasung, Camilo Jaimes, Fedel Machado-Rivas, Shadab Khan, Simon K. Warfield, Ali Gholipour:
A machine learning-based method for estimating the number and orientations of major fascicles in diffusion-weighted magnetic resonance imaging. CoRR abs/2006.11117 (2020) - 2019
- [i12]Grand Roman Joldes, George C. Bourantas, Benjamin Zwick, Habibullah Amin Chowdhury, Adam Wittek, Sudip Agrawal, Konstantinos A. Mountris, Damon Hyde, Simon K. Warfield, Karol Miller:
Suite of Meshless Algorithms for Accurate Computation of Soft Tissue Deformation for Surgical Simulation. CoRR abs/1903.04760 (2019) - [i11]Karol Miller, Grand Roman Joldes, George C. Bourantas, Simon K. Warfield, Damon E. Hyde, Ron Kikinis, Adam Wittek:
Biomechanical modeling and computer simulation of the brain during neurosurgery. CoRR abs/1904.01192 (2019) - [i10]Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield:
Deep Plug-and-Play Prior for Parallel MRI Reconstruction. CoRR abs/1909.00089 (2019) - [i9]Davood Karimi, Haoran Dou, Simon K. Warfield, Ali Gholipour:
Deep learning with noisy labels: exploring techniques and remedies in medical image analysis. CoRR abs/1912.02911 (2019) - [i8]Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield:
ODE-based Deep Network for MRI Reconstruction. CoRR abs/1912.12325 (2019) - 2018
- [i7]Seyed Raein Hashemi, Seyed Sadegh Mohseni Salehi, Deniz Erdogmus, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour:
Tversky as a Loss Function for Highly Unbalanced Image Segmentation using 3D Fully Convolutional Deep Networks. CoRR abs/1803.11078 (2018) - [i6]Tatsuya Yokota, Burak Erem, Seyhmus Guler, Simon K. Warfield, Hidekata Hontani:
Missing Slice Recovery for Tensors Using a Low-rank Model in Embedded Space. CoRR abs/1804.01736 (2018) - [i5]Ali Pour Yazdanpanah, Onur Afacan, Simon K. Warfield:
Non-Learning based Deep Parallel MRI Reconstruction (NLDpMRI). CoRR abs/1808.02122 (2018) - [i4]Seyed Raein Hashemi, Sanjay P. Prabhu, Simon K. Warfield, Ali Gholipour:
Exclusive Independent Probability Estimation using Deep 3D Fully Convolutional DenseNets for IsoIntense Infant Brain MRI Segmentation. CoRR abs/1809.08168 (2018) - 2017
- [i3]Seyed Sadegh Mohseni Salehi, Seyed Raein Hashemi, Clemente Velasco-Annis, Abdelhakim Ouaalam, Judy A. Estroff, Deniz Erdogmus, Simon K. Warfield, Ali Gholipour:
Real-Time Automatic Fetal Brain Extraction in Fetal MRI by Deep Learning. CoRR abs/1710.09338 (2017) - [i2]Marzieh Haghighi, Simon K. Warfield, Sila Kurugol:
Automatic Renal Segmentation in DCE-MRI using Convolutional Neural Networks. CoRR abs/1712.07022 (2017) - 2007
- [i1]Olivier Clatz, Ender Konukoglu, Pierre-Yves Bondiau, Simon K. Warfield, Hervé Delingette, Nicholas Ayache:
Computational Brain Tumours. ERCIM News 2007(69) (2007)
Coauthor Index
[j90] [j86] [j85] [j84] [j81] [j80] [j79] [j78] [j77] [j75] [j74] [j71] [j67] [j64] [j63] [j59] [j57] [j56] [j41] [j38] [j34] [j28] [c172] [c170] [c169] [c167] [c166] [c160] [c158] [c155] [c151] [c149] [c147] [c146] [c134] [c119] [c117] [c116] [c105] [c98] [i24] [i21] [i20] [i15] [i14] [i13] [i9] [i7] [i4] [i3]
Damon Hyde
aka: Damon E. Hyde
aka: Damon E. Hyde
Benoit Scherrer
aka: Benoît Scherrer
aka: Benoît Scherrer
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