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2020 – today
- 2024
[j47]Sarah Mullin, Robert A. McDougal, Kei-Hoi Cheung, Halil Kilicoglu, Amanda Beck, Caroline J. Zeiss:
Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics. J. Biomed. Semant. 15(1): 13 (2024)- 2023
- [j46]Katrin Hänsel, Sarah Dudgeon, Kei-Hoi Cheung, Thomas J. S. Durant
, Wade L. Schulz:
From Data to Wisdom: Biomedical Knowledge Graphs for Real-World Data Insights. J. Medical Syst. 47(1): 65 (2023) - 2021
- [j45]Syed Ahmad Chan Bukhari, Shrikant Pawar, Jeff Mandell, Steven H. Kleinstein, Kei-Hoi Cheung:
LinkedImm: a linked data graph database for integrating immunological data. BMC Bioinform. 22-S(9): 105 (2021) - 2020
- [j44]Randi Vita, James A. Overton, Patrick Dunn, Kei-Hoi Cheung, Steven H. Kleinstein, Alessandro Sette, Bjoern Peters:
A structured model for immune exposures. Database J. Biol. Databases Curation 2020 (2020)
2010 – 2019
- 2019
- [j43]James A. Overton, Randi Vita, Patrick Dunn, Julie G. Burel, Syed Ahmad Chan Bukhari, Kei-Hoi Cheung, Steven H. Kleinstein, Alexander D. Diehl, Bjoern Peters:
Reporting and connecting cell type names and gating definitions through ontologies. BMC Bioinform. 20-S(5): 259-264 (2019) - [c24]Syed Ahmad Chan Bukhari, Jeff Mandell, Steven H. Kleinstein, Kei-Hoi Cheung:
A linked data graph approach to integration of immunological data. BIBM 2019: 1742-1749 - 2018
- [j42]Syed Ahmad Chan Bukhari, Marcos Martínez Romero, Martin J. O'Connor, Attila L. Egyedi, Debra Willrett, John Graybeal, Mark A. Musen, Kei-Hoi Cheung, Steven H. Kleinstein:
CEDAR OnDemand: a browser extension to generate ontology-based scientific metadata. BMC Bioinform. 19(1): 268:1-268:6 (2018) - [c23]Randi Vita, Bjoern Peters, James A. Overton, Kei-Hoi Cheung, Steven H. Kleinstein:
Formalizing the Representation of Immune Exposures for Human Immunology Studies. ICBO 2018 - [c22]Mark A. Musen, Susanna-Assunta Sansone, Kei-Hoi Cheung, Steven H. Kleinstein, Morgan Crafts, Stephan C. Schürer, John Graybeal:
CEDAR: Semantic Web Technology to Support Open Science. WWW (Companion Volume) 2018: 427-428 - 2017
- [c21]Roxanne Wadia, Mark A. Shifman, Forrest W. Levin, Luis N. Marenco, Cynthia Brandt, Kei-Hoi Cheung, Tamar H. Taddei, Michael Krauthammer:
A Clinical Decision Support System for Monitoring Post-Colonoscopy Patient Follow-Up and Scheduling. CRI 2017 - 2016
- [j41]Kei-Hoi Cheung, Shivakumar Keerthikumar, Paola Roncaglia, Sai Lakshmi Subramanian, Matthew E. Roth, Monisha Samuel, Sushma Anand, Lahiru Gangoda, Stephen Gould, Roger Alexander, David Galas, Mark B. Gerstein, Andrew F. Hill, Robert R. Kitchen, Jan Lötvall, Tushar Patel:
Extending gene ontology in the context of extracellular RNA and vesicle communication. J. Biomed. Semant. 7: 19 (2016) - 2015
- [j40]Christopher M. Colangelo, Mark A. Shifman, Kei-Hoi Cheung, Kathryn L. Stone, Nicholas Carriero, Erol E. Gulcicek, TuKiet T. Lam, Terence Wu, Robert D. Bjornson, Can Bruce, Angus C. Nairn, Jesse Rinehart, Perry L. Miller, Kenneth R. Williams:
YPED: An Integrated Bioinformatics Suite and Database for Mass Spectrometry-based Proteomics Research. Genom. Proteom. Bioinform. 13(1): 25-35 (2015) - [j39]Mark A. Musen, Carol A. Bean, Kei-Hoi Cheung, Michel Dumontier, Kim A. Durante, Olivier Gevaert, Alejandra N. González-Beltrán, Purvesh Khatri, Steven H. Kleinstein, Martin J. O'Connor, Yannick Pouliot, Philippe Rocca-Serra, Susanna-Assunta Sansone, Jeffrey A. Wiser:
The center for expanded data annotation and retrieval. J. Am. Medical Informatics Assoc. 22(6): 1148-1152 (2015) - 2014
- [j38]Gregory A. Ryslik, Yuwei Cheng, Kei-Hoi Cheung, Yorgo Modis, Hongyu Zhao:
A graph theoretic approach to utilizing protein structure to identify non-random somatic mutations. BMC Bioinform. 15: 86 (2014) - [j37]Gregory A. Ryslik, Yuwei Cheng, Kei-Hoi Cheung, Robert D. Bjornson, Daniel Zelterman, Yorgo Modis, Hongyu Zhao:
A spatial simulation approach to account for protein structure when identifying non-random somatic mutations. BMC Bioinform. 15: 231 (2014) - [r1]Gordon M. Shepherd, Thomas M. Morse, Luis N. Marenco, Kei-Hoi Cheung, Ted Carnevale, Michele Migliore, Robert A. McDougal, Michael L. Hines, Perry L. Miller:
SenseLab: Integration of Multidisciplinary Neuroscience Data. Encyclopedia of Computational Neuroscience 2014 - 2013
- [j36]Gregory A. Ryslik, Yuwei Cheng, Kei-Hoi Cheung, Yorgo Modis, Hongyu Zhao:
Utilizing protein structure to identify non-random somatic mutations. BMC Bioinform. 14: 190 (2013) - 2012
- [j35]Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer:
A semantic web framework to integrate cancer omics data with biological knowledge. BMC Bioinform. 13(S-1): S10 (2012) - 2011
- [j34]Matthew Scotch, Indra Neil Sarkar, Changjiang Mei, Robert Leaman, Kei-Hoi Cheung, Pierina Ortiz, Ashutosh Singraur, Graciela Gonzalez:
Enhancing phylogeography by improving geographical information from GenBank. J. Biomed. Informatics 44(Supplement-1): S44-S47 (2011) - 2010
- [j33]Matthias Samwald, Huajun Chen, Alan Ruttenberg, Ernest Lim, Luis N. Marenco, Perry L. Miller, Gordon M. Shepherd, Kei-Hoi Cheung:
Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience. Artif. Intell. Medicine 48(1): 21-28 (2010) - [j32]Matthew Holford, Ekta Khurana, Kei-Hoi Cheung, Mark Gerstein:
Using semantic web rules to reason on an ontology of pseudogenes. Bioinform. 26(12): 71-78 (2010) - [c20]Helena F. Deus, Jun Zhao, Satya S. Sahoo, Matthias Samwald, Eric Prud'hommeaux, Michael Miller, M. Scott Marshall, Kei-Hoi Cheung:
Provenance of Microarray Experiments for a Better Understanding of Experiment Results. SWPM@ISWC 2010 - [c19]Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer:
Analysis of Cancer Omics Data In A Semantic Web Framework. SWAT4LS 2010 - [e1]Huajun Chen, Yimin Wang, Kei-Hoi Cheung:
Semantic e-Science. Annals of Information Systems 11, Springer 2010, ISBN 978-1-4419-5902-7 [contents] - [i1]Matthew Holford, Jamie P. McCusker, Kei-Hoi Cheung, Michael Krauthammer:
Analysis Of Cancer Omics Data In A Semantic Web Framework. CoRR abs/1012.1648 (2010)
2000 – 2009
- 2009
- [j31]Zhang Zhang, Kei-Hoi Cheung, Jeffrey P. Townsend:
Bringing Web 2.0 to bioinformatics. Briefings Bioinform. 10(1): 1-10 (2009) - [j30]Kei-Hoi Cheung, Eric Prud'hommeaux, Yimin Wang, Susie Stephens:
Semantic Web for Health Care and Life Sciences: a review of the state of the art. Briefings Bioinform. 10(2): 111-113 (2009) - [j29]Kei-Hoi Cheung, Ernest Lim, Matthias Samwald, Huajun Chen, Luis N. Marenco, Matthew Holford, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller:
Approaches to neuroscience data integration. Briefings Bioinform. 10(4): 345-353 (2009) - [j28]Kei-Hoi Cheung, H. Robert Frost, M. Scott Marshall, Eric Prud'hommeaux, Matthias Samwald, Jun Zhao, Adrian Paschke:
A journey to Semantic Web query federation in the life sciences. BMC Bioinform. 10(S-10): 10 (2009) - [j27]Hugo Y. K. Lam, Ekta Khurana, Gang Fang, Philip Cayting, Nicholas Carriero, Kei-Hoi Cheung, Mark B. Gerstein:
Pseudofam: the pseudogene families database. Nucleic Acids Res. 37(Database-Issue): 738-743 (2009) - [c18]Anja Jentzsch, Jun Zhao, Oktie Hassanzadeh, Kei-Hoi Cheung, Matthias Samwald, Bo Andersson:
Linking Open Drug Data. I-SEMANTICS 2009 - [c17]Matthias Samwald, Ernest Lim, Peter Masiar, Luis N. Marenco, Huajun Chen, Thomas M. Morse, Pradeep Mutalik, Gordon M. Shepherd, Perry L. Miller, Kei-Hoi Cheung:
Entrez Neuron RDFa: A Pragmatic Semantic Web Application for Data Integration in Neuroscience Research. MIE 2009: 317-321 - 2008
- [j26]Matthew Scotch, Kevin Y. Yip, Kei-Hoi Cheung:
Case Report: Development of Grid-like Applications for Public Health Using Web 2.0 Mashup Techniques. J. Am. Medical Informatics Assoc. 15(6): 783-786 (2008) - [j25]Kei-Hoi Cheung, Vipul Kashyap, Joanne Luciano, Huajun Chen, Yimin Wang, Susie Stephens:
Semantic mashup of biomedical data. J. Biomed. Informatics 41(5): 683-686 (2008) - [j24]Kei-Hoi Cheung, Kevin Y. Yip, Jeffrey P. Townsend, Matthew Scotch:
HCLS 2.0/3.0: Health care and life sciences data mashup using Web 2.0/3.0. J. Biomed. Informatics 41(5): 694-705 (2008) - [c16]Huajun Chen, Kei-Hoi Cheung, Michel Dumontier, Eric Prud'hommeaux, Alan Ruttenberg, Susie Stephens, Yimin Wang:
Report on semantic web for health care and life sciences workshop. WWW 2008: 1273-1274 - 2007
- [j23]Chiquito J. Crasto, Luis N. Marenco, Nian Liu, Thomas M. Morse, Kei-Hoi Cheung, Peter C. Lai, Gautam Bahl, Peter Masiar, Hugo Y. K. Lam, Ernest Lim, Huajun Chen, Prakash M. Nadkarni, Michele Migliore, Perry L. Miller, Gordon M. Shepherd:
SenseLab: new developments in disseminating neuroscience information. Briefings Bioinform. 8(3): 150-162 (2007) - [j22]Andrew K. Smith, Kei-Hoi Cheung, Michael Krauthammer, Martin H. Schultz, Mark Gerstein:
Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics. Bioinform. 23(22): 3073-3079 (2007) - [j21]Hugo Y. K. Lam, Luis N. Marenco, Tim Clark, Yong Gao, June Kinoshita, Gordon M. Shepherd, Perry L. Miller, Elizabeth Wu, Gwendolyn T. Wong, Nian Liu, Chiquito J. Crasto, Thomas M. Morse, Susie Stephens, Kei-Hoi Cheung:
AlzPharm: integration of neurodegeneration data using RDF. BMC Bioinform. 8(S-3) (2007) - [j20]Alan Ruttenberg, Tim Clark, William J. Bug, Matthias Samwald, Olivier Bodenreider, Helen Chen, Donald Doherty, Kerstin Forsberg, Yong Gao, Vipul Kashyap, June Kinoshita, Joanne Luciano, M. Scott Marshall, Chimezie Ogbuji, Jonathan Rees, Susie Stephens, Gwendolyn T. Wong, Elizabeth Wu, Davide Zaccagnini, Tonya Hongsermeier, Eric Neumann, Ivan Herman, Kei-Hoi Cheung:
Advancing translational research with the Semantic Web. BMC Bioinform. 8(S-3) (2007) - [j19]Andrew K. Smith, Kei-Hoi Cheung, Kevin Y. Yip, Martin H. Schultz, Mark Gerstein:
LinkHub: a Semantic Web system that facilitates cross-database queries and information retrieval in proteomics. BMC Bioinform. 8(S-3) (2007) - [j18]Mark Gerstein, Dov Greenbaum, Kei-Hoi Cheung, Perry L. Miller:
An interdepartmental Ph.D. program in computational biology and bioinformatics: The Yale perspective. J. Biomed. Informatics 40(1): 73-79 (2007) - [p1]Vipul Kashyap, Kei-Hoi Cheung, Donald Doherty, Matthias Samwald, M. Scott Marshall, Joanne Luciano, Susie Stephens, Ivan Herman, Raymond Hookway:
Ontology-Based Data Integration For Biomedical Research. The Semantic Web: Real-World Applications from Industry 2007: 97-122 - 2006
- [j17]Kei-Hoi Cheung, Peishen Qi, David Tuck, Michael Krauthammer:
A semantic web approach to biological pathway data reasoning and integration. J. Web Semant. 4(3): 207-215 (2006) - [c15]Hugo Y. K. Lam, Luis N. Marenco, Gordon M. Shepherd, Perry L. Miller, Kei-Hoi Cheung:
Using Web Ontology Language to Integrate Heterogeneous Databases in the Neurosciences. AMIA 2006 - [c14]Kevin Y. Yip, Peishen Qi, Martin H. Schultz, David W. Cheung, Kei-Hoi Cheung:
SemBiosphere: A Semantic Web Approach to Recommending Microarray Clustering Services. Pacific Symposium on Biocomputing 2006: 188-199 - 2005
- [j16]Nicholas Carriero, Michael V. Osier, Kei-Hoi Cheung, Perry L. Miller, Mark Gerstein, Hongyu Zhao, Baolin Wu, Scott Rifkin, Joseph T. Chang, Heping Zhang, Kevin P. White, Kenneth R. Williams, Martin H. Schultz:
Case Report: A High Productivity/Low Maintenance Approach to High-performance Computation for Biomedicine: Four Case Studies. J. Am. Medical Informatics Assoc. 12(1): 90-98 (2005) - [c13]Mark A. Shifman, Kexin Sun, Christopher M. Colangelo, Kei-Hoi Cheung, Perry L. Miller, Kenneth R. Williams:
YPED: A Proteomics Database for Protein Expression Analysis. AMIA 2005 - [c12]Kei-Hoi Cheung, Kevin Y. Yip, Andrew K. Smith, Remko de Knikker, Andy Masiar, Mark Gerstein:
YeastHub: a semantic web use case for integrating data in the life sciences domain. ISMB (Supplement of Bioinformatics) 2005: 85-96 - 2004
- [j15]Remko de Knikker, Youjun Guo, Jin-Long Li, Albert K. H. Kwan, Kevin Y. Yip, David W. Cheung, Kei-Hoi Cheung:
A web services choreography scenario for interoperating bioinformatics applications. BMC Bioinform. 5: 25 (2004) - [j14]Michael V. Osier, Hongyu Zhao, Kei-Hoi Cheung:
Handling multiple testing while interpreting microarrays with the Gene Ontology Database. BMC Bioinform. 5: 124 (2004) - [j13]Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung:
Identifying projected clusters from gene expression profiles. J. Biomed. Informatics 37(5): 345-357 (2004) - [j12]Kei-Hoi Cheung, Janet Hager, Deyun Pan, Ranjana Srivastava, Shrikant M. Mane, Yuli Li, Perry L. Miller, Kenneth R. Williams:
KARMA: a web server application for comparing and annotating heterogeneous microarray platforms. Nucleic Acids Res. 32(Web-Server-Issue): 441-444 (2004) - [c11]Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung:
Identifying Projected Clusters from Gene Expression Profiles. BIBE 2004: 259-266 - [c10]Kei-Hoi Cheung, Deyun Pan, Andrew K. Smith, Michael R. Seringhaus, Shawn M. Douglas, Mark Gerstein:
A XML-Based Approach to Integrating Heterogeneous Yeast Genome Data. METMBS 2004: 236-242 - 2003
- [j11]Deyun Pan, Ning Sun, Kei-Hoi Cheung, Zhong Guan, Ligeng Ma, Matthew Holford, Xingwang Deng, Hongyu Zhao:
PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis. BMC Bioinform. 4: 56 (2003) - [j10]Haseena Rajeevan, Michael V. Osier, Kei-Hoi Cheung, H. Deng, L. Druskin, R. Heinzen, Judith R. Kidd, S. Stein, Andrew J. Pakstis, Nick P. Tosches, C.-C. Yeh, Perry L. Miller, Kenneth K. Kidd:
ALFRED: the ALelle FREquency Database. Update. Nucleic Acids Res. 31(1): 270-271 (2003) - 2002
- [j9]Kei-Hoi Cheung, Janet Hager, Kenneth Nelson, Kevin P. White, Yuli Li, Michael Snyder, Kenneth R. Williams, Perry L. Miller:
A dynamic approach to mapping coordinates between microplates and microarrays. J. Biomed. Informatics 35(5-6): 306-312 (2002) - [j8]Anuj Kumar, Kei-Hoi Cheung, Nick P. Tosches, Peter Masiar, Yang Liu, Perry L. Miller, Michael Snyder:
The TRIPLES database: a community resource for yeast molecular biology. Nucleic Acids Res. 30(1): 73-75 (2002) - [c9]Kei-Hoi Cheung, Kevin P. White, Janet Hager, Mark Gerstein, Valerie Reinke, Kenneth Nelson, Peter Masiar, Ranjana Srivastava, Yuli Li, Ju Li, Hongyu Zhao, Jinming Li, David B. Allison, Michael Snyder, Perry L. Miller, Kenneth R. Williams:
YMD: a microarray database for large-scale gene expression analysis. AMIA 2002 - 2001
- [j7]Michael V. Osier, Kei-Hoi Cheung, Judith R. Kidd, Andrew J. Pakstis, Perry L. Miller, Kenneth K. Kidd:
ALFRED: an allele frequency database for diverse populations and DNA polymorphisms - an update. Nucleic Acids Res. 29(1): 317-319 (2001) - [c8]Kei-Hoi Cheung, Aniruddha M. Deshpande, Nick P. Tosches, S. Nath, A. Agrawal, Perry L. Miller, Anuj Kumar, Michael Snyder:
A metadata framework for interoperating heterogeneous genome data using XML. AMIA 2001 - [c7]Kei-Hoi Cheung, Yang Liu, Anuj Kumar, Michael Snyder, Mark Gerstein, Perry L. Miller:
An XML Application For Genomic Data Interoperation. BIBE 2001: 97-103 - 2000
- [j6]Anuj Kumar, Kei-Hoi Cheung, Petra Ross-MacDonald, Paulo S. R. Coelho, Perry L. Miller, Michael Snyder:
TRIPLES: a database of gene function in Saccharomyces cerevisiae. Nucleic Acids Res. 28(1): 81-84 (2000) - [j5]Kei-Hoi Cheung, Michael V. Osier, Judith R. Kidd, Andrew J. Pakstis, Perry L. Miller, Kenneth K. Kidd:
ALFRED: an allele frequency database for diverse populations and DNA polymorphisms. Nucleic Acids Res. 28(1): 361-363 (2000) - [c6]Kei-Hoi Cheung, Perry L. Miller, A. H. Sherman, Stephen B. Weston, Eric Stratmann, Martin H. Schultz, Michael Snyder, Anuj Kumar:
Graphically-enabled integration of bioinformatics tools allowing parallel execution. AMIA 2000 - [c5]Kei-Hoi Cheung, Dong-Guk Shin:
A Graph-based Meta-data Framework for Interoperation between Genome Databases. BIBE 2000: 109-117
1990 – 1999
- 1998
- [j4]Kei-Hoi Cheung, Prakash M. Nadkarni, Dong-Guk Shin:
A metadata approach to query interoperation between molecular biology databases. Bioinform. 14(6): 486-497 (1998) - [c4]Kei-Hoi Cheung, Prakash M. Nadkarni, Perry L. Miller, Dong-Guk Shin:
Automatic query mapping among genomic databases: a pilot exploration. AMIA 1998 - [c3]Kei-Hoi Cheung, Dong-Guk Shin:
A simple model capable of expressing meta-data for database interoperability. CATA 1998: 182-185 - [c2]Kei-Hoi Cheung, Dong-Guk Shin:
A Framework Designed to Represent Both Data and Meta-Data to Enhance Database Interoperability. IADT 1998: 184-191 - 1996
- [j3]Prakash M. Nadkarni, Kei-Hoi Cheung, C. Castiglione, Perry L. Miller, Kenneth K. Kidd:
DNA Workbench: A Database Package to Manage Regional Physical Mapping. J. Comput. Biol. 3(2): 319-329 (1996) - 1995
- [j2]Perry L. Miller, Prakash M. Nadkarni, Kenneth K. Kidd, Kei-Hoi Cheung, David C. Ward, Amy Banks, Patricia Bray-Ward, Lisa Cupelli, Valerie Herdman, Ivonne Marondel, Kate Montcomery, Beatrice Renault, Sunc-Joo Yoon, Kenneth S. Krauter, Raju Kucherlapati:
Application of Technology: Internet-based Support for Bioscience Research: A Collaborative Genome center for Human Chromosome 12. J. Am. Medical Informatics Assoc. 2(6): 351-364 (1995) - 1992
- [c1]Dean F. Sittig, Kei-Hoi Cheung, Lewis Berman:
Fuzzy classification of heart rate trends and artifacts. CBMS 1992: 510-519
1980 – 1989
- 1988
- [j1]Kei-Hoi Cheung, Martin D. Fox:
Isoreflectance contours for medical imaging. IEEE Trans. Biomed. Eng. 35(12): 1059-1063 (1988)
Coauthor Index
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