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Camilo Thorne

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affiliation: Elsevier, Germany
affiliation (former): University of Stuttgart, Institute for Natural Language Processing, Germany
affiliation (former): University of Mannheim, Germany
affiliation (former): Free University of Bozen-Bolzano, Italy

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Journal Articles

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2024
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Jiayuan He, Yuan Li, Zenan Zhai, Biaoyan Fang, Camilo Thorne, Christian Druckenbrodt, Saber A. Akhondi, Karin Verspoor:
Focused Contrastive Loss for Classification With Pre-Trained Language Models. IEEE Trans. Knowl. Data Eng. 36(7): 3047-3061 (2024)
2021
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Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
ChEMU 2020: Natural Language Processing Methods Are Effective for Information Extraction From Chemical Patents. Frontiers Res. Metrics Anal. 6: 654438 (2021)
[j4]
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Zenan Zhai, Christian Druckenbrodt, Camilo Thorne, Saber A. Akhondi, Dat Quoc Nguyen, Trevor Cohn, Karin Verspoor:
ChemTables: a dataset for semantic classification on tables in chemical patents. J. Cheminformatics 13(1): 97 (2021)
2017
[j3]
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Erman Acar, Manuel Fink, Christian Meilicke, Camilo Thorne, Heiner Stuckenschmidt:
Multi-Attribute Decision Making with Weighted Description Logics. FLAP 4(7) (2017)
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Camilo Thorne:
Chatbots for troubleshooting: A survey. Lang. Linguistics Compass 11(10) (2017)
2012
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Camilo Thorne, Diego Calvanese:
Tractability and Intractability of Controlled Languages for Data Access. Stud Logica 100(4): 787-813 (2012)

Conference and Workshop Papers

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2024
[c34]
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Maziar Moradi Fard, Camilo Thorne, Paula Sorrolla Bayod, Saber A. Akhondi, Wytze Vlietstra:
Automated Synonym Discovery for Taxonomy Maintenance Using Semantic Search Techniques. NLDB (2) 2024: 352-358
[c33]
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Maziar Moradi Fard, Paula Sorrolla Bayod, Kiomars Motarjem, Mohammad Alian Nejadi, Saber A. Akhondi, Camilo Thorne:
Learning Section Weights for Multi-label Document Classification. NLDB (2) 2024: 359-366
2022
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Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor:
Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. CLEF 2022: 521-540
[c31]
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Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Kojiro Machi, Masaharu Yoshioka, Youngrok Jang, Hosung Song, Junho Lee, Gyeonghun Kim, Yireun Kim, Stanley Jungkyu Choi, Honglak Lee, Kyunghoon Bae, Darshini Mahendran, Christina Tang, Bridget T. McInnes, Timothy Baldwin, Karin Verspoor:
Extended Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. CLEF (Working Notes) 2022: 758-781
[c30]
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Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zenan Zhai, Zubair Afzal, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
The ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. ECIR (2) 2022: 400-407
2021
[c29]
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Vladimir Araujo, Andrés Carvallo, Carlos Aspillaga, Camilo Thorne, Denis Parra:
Stress Test Evaluation of Biomedical Word Embeddings. BioNLP@NAACL-HLT 2021: 119-125
[c28]
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Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor:
Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. CLEF 2021: 292-307
[c27]
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Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor:
Extended Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. CLEF (Working Notes) 2021: 693-709
[c26]
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Jiayuan He, Biaoyan Fang, Hiyori Yoshikawa, Yuan Li, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. ECIR (2) 2021: 608-615
2020
[c25]
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Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
Overview of ChEMU 2020: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. CLEF 2020: 237-254
[c24]
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Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto, Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro, Daniel M. Lowe, John Mayfield, Abdullatif Köksal, Hilal Dönmez, Elif Özkirimli, Arzucan Özgür, Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes, C. S. Malarkodi, Pattabhi Rk Rao, Sobha Lalitha Devi, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. CLEF (Working Notes) 2020
[c23]
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Dat Quoc Nguyen, Zenan Zhai, Hiyori Yoshikawa, Biaoyan Fang, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Saber A. Akhondi, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
ChEMU: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. ECIR (2) 2020: 572-579
[c22]
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Dhruba Pujary, Camilo Thorne, Wilker Aziz:
Disease Normalization with Graph Embeddings. IntelliSys (2) 2020: 209-217
2019
[c21]
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Hiyori Yoshikawa, Dat Quoc Nguyen, Zenan Zhai, Christian Druckenbrodt, Camilo Thorne, Saber A. Akhondi, Timothy Baldwin, Karin Verspoor:
Detecting Chemical Reactions in Patents. ALTA 2019: 100-110
[c20]
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Zenan Zhai, Dat Quoc Nguyen, Saber A. Akhondi, Camilo Thorne, Christian Druckenbrodt, Trevor Cohn, Michelle Gregory, Karin Verspoor:
Improving Chemical Named Entity Recognition in Patents with Contextualized Word Embeddings. BioNLP@ACL 2019: 328-338
2018
[c19]
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Camilo Thorne, Roman Klinger:
On the Semantic Similarity of Disease Mentions in MEDLINE and Twitter. NLDB 2018: 324-332
2017
[c18]
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Camilo Thorne, Roman Klinger:
Towards Confidence Estimation for Typed Protein-Protein Relation Extraction. BiomedicalNLP@RANLP 2017: 55-63
2016
[c17]
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Jenny Copara, José Ochoa, Camilo Thorne, Goran Glavas:
Spanish NER with Word Representations and Conditional Random Fields. NEWS@ACM 2016: 34-40
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Jenny Copara, José Ochoa, Camilo Thorne, Goran Glavas:
Exploring Unsupervised Features in Conditional Random Fields for Spanish Named Entity Recognition. BRACIS 2016: 283-288
[c15]
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Camilo Thorne, Stefano Faralli, Heiner Stuckenschmidt:
Cross-Evaluation of Entity Linking and Disambiguation Systems for Clinical Text Annotation. SEMANTiCS 2016: 169-172
[c14]
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Jenny Copara, José Ochoa, Camilo Thorne, Goran Glavas:
Conditional Random Fields for Spanish Named Entity Recognition Using Unsupervised Features. IBERAMIA 2016: 175-186
2015
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Erman Acar, Camilo Thorne, Heiner Stuckenschmidt:
Towards Decision Making via Expressive Probabilistic Ontologies. ADT 2015: 52-68
[c12]
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Jakub Szymanik, Camilo Thorne:
Semantic Complexity of Quantifiers and Their Distribution in Corpora. IWCS 2015: 64-69
2013
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Camilo Thorne, Elena Cardillo, Claudio Eccher, Marco Montali, Diego Calvanese:
Process Fragment Recognition in Clinical Documents. AI*IA 2013: 227-238
[c10]
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Camilo Thorne, Marco Montali, Diego Calvanese, Elena Cardillo, Claudio Eccher:
Automated Activity Recognition in Clinical Documents. IJCNLP 2013: 1129-1133
2011
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Camilo Thorne:
Querying the Fragments of English. WoLLIC 2011: 257-271
2009
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Camilo Thorne, Diego Calvanese:
The Data Complexity of the Syllogistic Fragments of English. Amsterdam Colloquium on Logic, Language and Meaning 2009: 114-123
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Camilo Thorne, Diego Calvanese:
Controlled English Ontology-Based Data Access. CNL 2009: 135-154
[c6]
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Camilo Thorne, Diego Calvanese:
Exploring Controlled English Ontology-Based Data Access. CNL (Pre-Proceedings) 2009
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Camilo Thorne, Diego Calvanese:
Controlled Aggregate Tree Shaped Questions over Ontologies. FQAS 2009: 394-405
2008
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Diego Calvanese, Evgeny Kharlamov, Werner Nutt, Camilo Thorne:
Aggregate queries over ontologies. ONISW 2008: 97-104
2007
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Raffaella Bernardi, Francesca Bonin, Diego Calvanese, Domenico Carbotta, Camilo Thorne:
English Querying over Ontologies: E-QuOnto. AI*IA 2007: 170-181
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Raffaella Bernardi, Diego Calvanese, Camilo Thorne:
Expressing DL-Lite Ontologies with Controlled English. Description Logics 2007
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Camilo Thorne:
Categorial Module Grammars of Bounded Size have Finite Bounded Density. LATA 2007: 577-588

Informal and Other Publications

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2023
[i9]
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Chieling Yueh, Evangelos Kanoulas, Bruno Martins, Camilo Thorne, Saber A. Akhondi:
Stress Testing BERT Anaphora Resolution Models for Reaction Extraction in Chemical Patents. CoRR abs/2306.13379 (2023)
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  - journals/corr/abs-2311-14633
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Thomas Jurriaans, Kinga Szarkowska, Eric T. Nalisnick, Markus Schwörer, Camilo Thorne, Saber A. Akhondi:
One Strike, You're Out: Detecting Markush Structures in Low Signal-to-Noise Ratio Images. CoRR abs/2311.14633 (2023)
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Maziar Moradi Fard, Paula Sorrolla Bayod, Kiomars Motarjem, Mohammad Alian Nejadi, Saber A. Akhondi, Camilo Thorne:
Learning Section Weights for Multi-Label Document Classification. CoRR abs/2311.15402 (2023)
2021
[i6]
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Vladimir Araujo, Andrés Carvallo, Carlos Aspillaga, Camilo Thorne, Denis Parra:
Stress Test Evaluation of Biomedical Word Embeddings. CoRR abs/2107.11652 (2021)
2020
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Camilo Thorne, Saber A. Akhondi:
Word Embeddings for Chemical Patent Natural Language Processing. CoRR abs/2010.12912 (2020)
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Dhruba Pujary, Camilo Thorne, Wilker Aziz:
Disease Normalization with Graph Embeddings. CoRR abs/2010.12925 (2020)
2019
[i3]
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Zenan Zhai, Dat Quoc Nguyen, Saber A. Akhondi, Camilo Thorne, Christian Druckenbrodt, Trevor Cohn, Michelle Gregory, Karin Verspoor:
Improving Chemical Named Entity Recognition in Patents with Contextualized Word Embeddings. CoRR abs/1907.02679 (2019)
2014
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Camilo Thorne:
Chases and Bag-Set Certain Answers. CoRR abs/1412.1671 (2014)
[i1]
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  - https://dblp.org/rec/journals/corr/Thorne14a
Camilo Thorne:
The Expressive Power of DL-Lite. CoRR abs/1412.5795 (2014)

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