default search action
Google
Google Scholar
Semantic Scholar
Internet Archive Scholar
CiteSeerX
ORCIDSaber A. Akhondi
Person information
Refine list
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
[j11]Jiayuan He
, Yuan Li, Zenan Zhai, Biaoyan Fang, Camilo Thorne, Christian Druckenbrodt, Saber A. Akhondi, Karin Verspoor:
Focused Contrastive Loss for Classification With Pre-Trained Language Models. IEEE Trans. Knowl. Data Eng. 36(7): 3047-3061 (2024)- [c21]Maziar Moradi Fard, Camilo Thorne, Paula Sorrolla Bayod, Saber A. Akhondi, Wytze Vlietstra:
Automated Synonym Discovery for Taxonomy Maintenance Using Semantic Search Techniques. NLDB (2) 2024: 352-358 - [c20]Maziar Moradi Fard, Paula Sorrolla Bayod, Kiomars Motarjem, Mohammad Alian Nejadi, Saber A. Akhondi, Camilo Thorne:
Learning Section Weights for Multi-label Document Classification. NLDB (2) 2024: 359-366 - 2023
- [i5]Chieling Yueh, Evangelos Kanoulas, Bruno Martins, Camilo Thorne, Saber A. Akhondi:
Stress Testing BERT Anaphora Resolution Models for Reaction Extraction in Chemical Patents. CoRR abs/2306.13379 (2023) - [i4]Thomas Jurriaans, Kinga Szarkowska, Eric T. Nalisnick, Markus Schwörer, Camilo Thorne, Saber A. Akhondi:
One Strike, You're Out: Detecting Markush Structures in Low Signal-to-Noise Ratio Images. CoRR abs/2311.14633 (2023) - [i3]Maziar Moradi Fard, Paula Sorrolla Bayod, Kiomars Motarjem, Mohammad Alian Nejadi, Saber A. Akhondi, Camilo Thorne:
Learning Section Weights for Multi-Label Document Classification. CoRR abs/2311.15402 (2023) - 2022
- [c19]Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor:
Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. CLEF 2022: 521-540 - [c18]Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Kojiro Machi, Masaharu Yoshioka, Youngrok Jang, Hosung Song, Junho Lee, Gyeonghun Kim, Yireun Kim, Stanley Jungkyu Choi, Honglak Lee, Kyunghoon Bae, Darshini Mahendran, Christina Tang, Bridget T. McInnes, Timothy Baldwin, Karin Verspoor:
Extended Overview of ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. CLEF (Working Notes) 2022: 758-781 - [c17]Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zenan Zhai, Zubair Afzal, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
The ChEMU 2022 Evaluation Campaign: Information Extraction in Chemical Patents. ECIR (2) 2022: 400-407 - 2021
- [j10]Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
ChEMU 2020: Natural Language Processing Methods Are Effective for Information Extraction From Chemical Patents. Frontiers Res. Metrics Anal. 6: 654438 (2021) - [j9]Zenan Zhai, Christian Druckenbrodt, Camilo Thorne, Saber A. Akhondi, Dat Quoc Nguyen, Trevor Cohn, Karin Verspoor:
ChemTables: a dataset for semantic classification on tables in chemical patents. J. Cheminformatics 13(1): 97 (2021) - [c16]Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor:
Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. CLEF 2021: 292-307 - [c15]Yuan Li, Biaoyan Fang, Jiayuan He, Hiyori Yoshikawa, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Timothy Baldwin, Karin Verspoor:
Extended Overview of ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. CLEF (Working Notes) 2021: 693-709 - [c14]Biaoyan Fang, Christian Druckenbrodt, Saber A. Akhondi, Jiayuan He, Timothy Baldwin, Karin Verspoor:
ChEMU-Ref: A Corpus for Modeling Anaphora Resolution in the Chemical Domain. EACL 2021: 1362-1375 - [c13]Jiayuan He, Biaoyan Fang, Hiyori Yoshikawa, Yuan Li, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Zubair Afzal, Zenan Zhai, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
ChEMU 2021: Reaction Reference Resolution and Anaphora Resolution in Chemical Patents. ECIR (2) 2021: 608-615 - 2020
- [c12]Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
Overview of ChEMU 2020: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. CLEF 2020: 237-254 - [c11]Jiayuan He, Dat Quoc Nguyen, Saber A. Akhondi, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Zubair Afzal, Zenan Zhai, Biaoyan Fang, Hiyori Yoshikawa, Ameer Albahem, Jingqi Wang, Yuankai Ren, Zhi Zhang, Yaoyun Zhang, Mai Hoang Dao, Pedro Ruas, Andre Lamurias, Francisco M. Couto, Jenny Copara, Nona Naderi, Julien Knafou, Patrick Ruch, Douglas Teodoro, Daniel M. Lowe, John Mayfield, Abdullatif Köksal, Hilal Dönmez, Elif Özkirimli, Arzucan Özgür, Darshini Mahendran, Gabrielle Gurdin, Nastassja Lewinski, Christina Tang, Bridget T. McInnes, C. S. Malarkodi, Pattabhi Rk Rao, Sobha Lalitha Devi, Lawrence Cavedon, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents. CLEF (Working Notes) 2020 - [c10]Dat Quoc Nguyen, Zenan Zhai, Hiyori Yoshikawa, Biaoyan Fang, Christian Druckenbrodt, Camilo Thorne, Ralph Hoessel, Saber A. Akhondi, Trevor Cohn, Timothy Baldwin, Karin Verspoor:
ChEMU: Named Entity Recognition and Event Extraction of Chemical Reactions from Patents. ECIR (2) 2020: 572-579 - [c9]Zubair Afzal, Vikrant Yadav, Olga Fedorova, Vaishnavi Kandala, Janneke van de Loo, Saber A. Akhondi, Pascal Coupet, George Tsatsaronis:
CORA: A Deep Active Learning Covid-19 Relevancy Algorithm to Identify Core Scientific Articles. NLP4COVID@EMNLP 2020 - [i2]Camilo Thorne, Saber A. Akhondi:
Word Embeddings for Chemical Patent Natural Language Processing. CoRR abs/2010.12912 (2020)
2010 – 2019
- 2019
- [j8]Saber A. Akhondi, Hinnerk Rey, Markus Schwörer, Michael Maier, John P. Toomey, Heike Nau, Gabriele Ilchmann, Mark Sheehan, Matthias Irmer, Claudia Bobach, Marius A. Doornenbal, Michelle Gregory, Jan A. Kors:
Automatic identification of relevant chemical compounds from patents. Database J. Biol. Databases Curation 2019: baz001 (2019) - [c8]Hiyori Yoshikawa, Dat Quoc Nguyen, Zenan Zhai, Christian Druckenbrodt, Camilo Thorne, Saber A. Akhondi, Timothy Baldwin, Karin Verspoor:
Detecting Chemical Reactions in Patents. ALTA 2019: 100-110 - [c7]Zenan Zhai, Dat Quoc Nguyen, Saber A. Akhondi, Camilo Thorne, Christian Druckenbrodt, Trevor Cohn, Michelle Gregory, Karin Verspoor:
Improving Chemical Named Entity Recognition in Patents with Contextualized Word Embeddings. BioNLP@ACL 2019: 328-338 - [i1]Zenan Zhai, Dat Quoc Nguyen, Saber A. Akhondi, Camilo Thorne, Christian Druckenbrodt, Trevor Cohn, Michelle Gregory, Karin Verspoor:
Improving Chemical Named Entity Recognition in Patents with Contextualized Word Embeddings. CoRR abs/1907.02679 (2019) - 2017
- [c6]Ander Intxaurrondo, Martín Pérez-Pérez, Gael Pérez Rodríguez, Jose Antonio López-Martín, Jesus Santamaría, Santiago de la Peña, Marta Villegas, Saber Ahmad Akhondi, Alfonso Valencia, Anália Lourenço, Martin Krallinger:
The Biomedical Abbreviation Recognition and Resolution (BARR) Track: Benchmarking, Evaluation and Importance of Abbreviation Recognition Systems Applied to Spanish Biomedical Abstracts. IberEval@SEPLN 2017: 230-246 - 2016
- [j7]Saber A. Akhondi, Ewoud Pons, Zubair Afzal, Herman van Haagen, Benedikt F. H. Becker, Kristina M. Hettne, Erik M. van Mulligen, Jan A. Kors:
Chemical entity recognition in patents by combining dictionary-based and statistical approaches. Database J. Biol. Databases Curation 2016 (2016) - [j6]Ewoud Pons, Benedikt F. H. Becker, Saber A. Akhondi, Zubair Afzal, Erik M. van Mulligen, Jan A. Kors:
Extraction of chemical-induced diseases using prior knowledge and textual information. Database J. Biol. Databases Curation 2016 (2016) - [c5]Zubair Afzal, Saber A. Akhondi, Herman H. H. B. M. van Haagen, Erik M. van Mulligen, Jan A. Kors:
Concept Recognition in French Biomedical Text Using Automatic Translation. CLEF 2016: 162-173 - [c4]Erik M. van Mulligen, Zubair Afzal, Saber A. Akhondi, Dang Vo, Jan A. Kors:
Erasmus MC at CLEF eHealth 2016: Concept Recognition and Coding in French Texts. CLEF (Working Notes) 2016: 171-178 - [c3]Zhemin Zhu, Saber A. Akhondi, Umesh Nandal, Marius A. Doornenbal, Michelle Gregory:
Selecting Documents Relevant for Chemistry as a Classification Problem. EKAW (Satellite Events) 2016: 198-201 - 2015
- [j5]Jan A. Kors, Simon Clematide, Saber A. Akhondi, Erik M. van Mulligen, Dietrich Rebholz-Schuhmann:
A multilingual gold-standard corpus for biomedical concept recognition: the Mantra GSC. J. Am. Medical Informatics Assoc. 22(5): 948-956 (2015) - [j4]Saber A. Akhondi, Sorel Muresan, Antony J. Williams, Jan A. Kors:
Ambiguity of non-systematic chemical identifiers within and between small-molecule databases. J. Cheminformatics 7: 54:1-54:10 (2015) - [j3]Saber A. Akhondi, Kristina M. Hettne, Eelke van der Horst, Erik M. van Mulligen, Jan A. Kors:
Recognition of chemical entities: combining dictionary-based and grammar-based approaches. J. Cheminformatics 7(S-1): S10 (2015) - [j2]Martin Krallinger, Obdulia Rabal, Florian Leitner, Miguel Vazquez, David Salgado, Zhiyong Lu, Robert Leaman, Yanan Lu, Donghong Ji, Daniel M. Lowe, Roger A. Sayle, Riza Theresa Batista-Navarro, Rafal Rak, Torsten Huber, Tim Rocktäschel, Sérgio Matos, David Campos, Buzhou Tang, Hua Xu, Tsendsuren Munkhdalai, Keun Ho Ryu, S. V. Ramanan, P. Senthil Nathan, Slavko Zitnik, Marko Bajec, Lutz Weber, Matthias Irmer, Saber A. Akhondi, Jan A. Kors, Shuo Xu, Xin An, Utpal Kumar Sikdar, Asif Ekbal, Masaharu Yoshioka, Thaer M. Dieb, Miji Choi, Karin Verspoor, Madian Khabsa, C. Lee Giles, Hongfang Liu, Ravikumar Komandur Elayavilli, Andre Lamurias, Francisco M. Couto, Hong-Jie Dai, Richard Tzong-Han Tsai, Caglar Ata, Tolga Can, Anabel Usie, Rui Alves, Isabel Segura-Bedmar, Paloma Martínez, Julen Oyarzabal, Alfonso Valencia:
The CHEMDNER corpus of chemicals and drugs and its annotation principles. J. Cheminformatics 7(S-1): S2 (2015) - [c2]Zubair Afzal, Saber A. Akhondi, Herman van Haagen, Erik M. van Mulligen, Jan A. Kors:
Biomedical Concept Recognition in French Text Using Automatic Translation of English Terms. CLEF (Working Notes) 2015 - 2013
- [c1]Jan A. Kors, Simon Clematide, Saber A. Akhondi, Erik M. van Mulligen, Dietrich Rebholz-Schuhmann:
Creating Multilingual Gold Standard Corpora for Biomedical Concept Recognition. CLEF (Working Notes) 2013 - 2012
- [j1]Saber A. Akhondi, Jan A. Kors, Sorel Muresan:
Consistency of systematic chemical identifiers within and between small-molecule databases. J. Cheminformatics 4: 35 (2012)
Coauthor Index
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from 
to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the 
of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from 
, 
, and 
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from 
.
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-09-28 02:22 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint
dblp was originally created in 1993 at:
since 2018, dblp has been operated and maintained by:
the dblp computer science bibliography is funded and supported by:
