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ORCIDNagasuma R. Chandra
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Journal Articles
- 2023
[j28]Ushashi Banerjee, Adithya Chedere
, Raksha Padaki, Abhilash Mohan, Narmada Sambaturu, Amit Singh, Nagasuma Chandra:
PathTracer Comprehensively Identifies Hypoxia-Induced Dormancy Adaptations in Mycobacterium tuberculosis. J. Chem. Inf. Model. 63(19): 6156-6167 (2023)- 2022
- [j27]Santhosh Sankar, Naren Chandran Sakthivel, Nagasuma Chandra:
Fast Local Alignment of Protein Pockets (FLAPP): A System-Compiled Program for Large-Scale Binding Site Alignment. J. Chem. Inf. Model. 62(19): 4810-4819 (2022) - [j26]Santhosh Sankar, Nagasuma Chandra:
SiteMotif: A graph-based algorithm for deriving structural motifs in Protein Ligand binding sites. PLoS Comput. Biol. 18(2) (2022) - 2021
- [j25]Narmada Sambaturu, Vaidehi Pusadkar, Sridhar Hannenhalli, Nagasuma Chandra:
PathExt: a general framework for path-based mining of omics-integrated biological networks. Bioinform. 37(9): 1254-1262 (2021) - 2019
- [j24]Deepesh Nagarajan, Tushar Nagarajan, Neha Nanajkar, Nagasuma Chandra:
A Uniform In Vitro Efficacy Dataset to Guide Antimicrobial Peptide Design. Data 4(1): 27 (2019) - 2018
- [j23]Narmada Sambaturu, Sumanta Mukherjee, Martín López-García, Carmen Molina-París, Gautam I. Menon, Nagasuma Chandra:
Role of genetic heterogeneity in determining the epidemiological severity of H1N1 influenza. PLoS Comput. Biol. 14(3) (2018) - 2016
- [j22]Sumanta Mukherjee, Chiranjib Bhattacharyya, Nagasuma Chandra:
HLaffy: estimating peptide affinities for Class-1 HLA molecules by learning position-specific pair potentials. Bioinform. 32(15): 2297-2305 (2016) - [j21]Nithin Shivashankar, Sonali Patil, Amrisha Bhosle, Nagasuma Chandra, Vijay Natarajan:
MS3ALIGN: an efficient molecular surface aligner using the topology of surface curvature. BMC Bioinform. 17: 26 (2016) - [j20]Jyothi Padiadpu, Madhulika Mishra, Eshita Sharma, Uchurappa Mala, Kumar Somasundaram, Nagasuma Chandra:
Probing the Druggability Limits for Enzymes of the NAD Biosynthetic Network in Glioma. J. Chem. Inf. Model. 56(5): 843-853 (2016) - 2015
- [j19]Rahul Metri, Sridhar Hariharaputran, Gayatri Ramakrishnan, Praveen Anand, Upadhyayula S. Raghavender, Bernardo Ochoa-Montaño, Alicia P. Higueruelo, Ramanathan Sowdhamini, Nagasuma R. Chandra, Tom L. Blundell, Narayanaswamy Srinivasan:
SInCRe - structural interactome computational resource for Mycobacterium tuberculosis. Database J. Biol. Databases Curation 2015 (2015) - [j18]Talha Bin Masood, Sankaran Sandhya, Nagasuma R. Chandra, Vijay Natarajan:
CHEXVIS: a tool for molecular channel extraction and visualization. BMC Bioinform. 16: 119:1-119:19 (2015) - [j17]Richa Mudgal, Sankaran Sandhya, Gayatri Kumar, Ramanathan Sowdhamini, Nagasuma R. Chandra, Narayanaswamy Srinivasan:
NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection. Nucleic Acids Res. 43(Database-Issue): 300-305 (2015) - [j16]Soma Ghosh, Nagasuma R. Chandra, Saraswathi Vishveshwara:
Mechanism of Iron-Dependent Repressor (IdeR) Activation and DNA Binding: A Molecular Dynamics and Protein Structure Network Study. PLoS Comput. Biol. 11(12) (2015) - 2014
- [j15]Praveen Anand, Deepesh Nagarajan, Sumanta Mukherjee, Nagasuma R. Chandra:
PLIC: protein-ligand interaction clusters. Database J. Biol. Databases Curation 2014 (2014) - 2013
- [j14]Soma Ghosh, Priyanka Baloni, Sumanta Mukherjee, Praveen Anand, Nagasuma R. Chandra:
A multi-level multi-scale approach to study essential genes in Mycobacterium tuberculosis. BMC Syst. Biol. 7: 132 (2013) - [j13]Sumanta Mukherjee, Awanti Sambarey, Karyala Prashanthi, Nagasuma R. Chandra:
Current trends in modeling host-pathogen interactions. WIREs Data Mining Knowl. Discov. 3(2): 109-128 (2013) - 2012
- [j12]Praveen Anand, Kalidas Yeturu, Nagasuma R. Chandra:
PocketAnnotate: towards site-based function annotation. Nucleic Acids Res. 40(Web-Server-Issue): 400-408 (2012) - 2011
- [j11]Kalidas Yeturu, Nagasuma R. Chandra:
PocketAlign A Novel Algorithm for Aligning Binding Sites in Protein Structures. J. Chem. Inf. Model. 51(7): 1725-1736 (2011) - [j10]Nagasuma Chandra, Raghu Bhagavat, Eshita Sharma, P. Sreekanthreddy, Kumaravel Somasundaram:
Virtual screening, identification and experimental testing of novel inhibitors of PBEF1/Visfatin/NMPRTase for glioma therapy. J. Clin. Bioinform. 1: 5 (2011) - 2010
- [j9]Kalidas Yeturu, Tapani Utriainen, Graham J. L. Kemp, Nagasuma R. Chandra:
An automated framework for understanding structural variations in the binding grooves of MHC class II molecules. BMC Bioinform. 11(S-1): 55 (2010) - 2009
- [j8]Sahely Bhadra, Chiranjib Bhattacharyya, Nagasuma R. Chandra, I. Saira Mian:
A linear programming approach for estimating the structure of a sparse linear genetic network from transcript profiling data. Algorithms Mol. Biol. 4 (2009) - [j7]Karthik Raman, Nagasuma R. Chandra:
Flux balance analysis of biological systems: applications and challenges. Briefings Bioinform. 10(4): 435-449 (2009) - 2008
- [j6]Kalidas Yeturu, Nagasuma R. Chandra:
PocketMatch: A new algorithm to compare binding sites in protein structures. BMC Bioinform. 9 (2008) - [j5]Karthik Raman, Kalidas Yeturu, Nagasuma R. Chandra:
targetTB: A target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis. BMC Syst. Biol. 2: 109 (2008) - 2007
- [j4]Sourangshu Bhattacharya, Chiranjib Bhattacharyya, Nagasuma R. Chandra:
Comparison of protein structures by growing neighborhood alignments. BMC Bioinform. 8 (2007) - 2006
- [j3]Sourangshu Bhattacharya, Chiranjib Bhattacharyya, Nagasuma R. Chandra:
Projections for fast protein structure retrieval. BMC Bioinform. 7(S-5) (2006) - 2005
- [j2]Karthik Raman, Preethi Rajagopalan, Nagasuma R. Chandra:
Flux Balance Analysis of Mycolic Acid Pathway: Targets for Anti-Tubercular Drugs. PLoS Comput. Biol. 1(5) (2005) - 2003
- [j1]Tejasvini Prasad, M. N. Prathima, Nagasuma Chandra:
Detection of hydrogen-bond signature patterns in protein families. Bioinform. 19(1): 167-168 (2003)
Conference and Workshop Papers
- 2017
- [c5]Rahul Metri, Shikhar Saxena, Madhulika Mishra, Nagasuma Chandra:
Modelling metabolic rewiring during melanoma progression using flux balance analysis. BIBM 2017: 134-137 - 2015
- [c4]Narmada Sambaturu, Madhulika Mishra, Nagasuma Chandra:
EpiTracer - an algorithm for identifying epicenters in condition-specific biological networks. BIBM 2015: 177-182 - 2014
- [c3]Amrisha Bhosle, Nagasuma Chandra:
Different cancer cell lines resistant to the same drug exhibit differences in folate pathway dynamics. BIBM 2014: 209-213 - 2010
- [c2]Nishanth Ulhas Nair, Navin Goyal, Nagasuma R. Chandra:
Enhanced flux balance analysis to model metabolic networks. BCB 2010: 358-361 - 2007
- [c1]Sourangshu Bhattacharya, Chiranjib Bhattacharyya, Nagasuma R. Chandra:
Structural alignment based kernels for protein structure classification. ICML 2007: 73-80
Coauthor Index
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