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ORCIDBIBM 2014: Belfast, United Kingdom
- Huiru Jane Zheng, Werner Dubitzky, Xiaohua Hu, Jin-Kao Hao, Daniel P. Berrar, Kwang-Hyun Cho, Yadong Wang, David R. Gilbert:
2014 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2014, Belfast, United Kingdom, November 2-5, 2014. IEEE Computer Society 2014, ISBN 978-1-4799-5669-2 - Veronika Strnadova, Aydin Buluç
, Jarrod Chapman, John R. Gilbert, Joseph Gonzalez, Stefanie Jegelka, Daniel Rokhsar, Leonid Oliker:
Efficient and accurate clustering for large-scale genetic mapping. 3-10 - Zhexue Wei, Daming Zhu, Lusheng Wang:
A parameterized algorithm for (1, 2)-exemplar breakpoint distance. 11-16 - Mingjie Wang, Haixu Tang, Yuzhen Ye:
Identification and characterization of accessory genomes in bacterial species based on genome comparison and metagenomic recruitment. 17-24 - Haiying Wang, Huiru Zheng, Fiona Browne, Chaoyang Wang:
Minimum dominating sets in cell cycle specific protein interaction networks. 25-30 - Lin Zhu, Suping Deng, De-Shuang Huang:
A two-stage geometric method for detecting unreliable links in protein-protein networks. 31-36 - Didier Devaurs, Amarda Shehu, Thierry Siméon, Juan Cortés:
Sampling-based methods for a full characterization of energy landscapes of small peptides. 37-44 - Jianyu Shi, Siu-Ming Yiu, Yiming Li, Henry C. M. Leung, Francis Y. L. Chin:
Predicting drug-target interaction for new drugs using enhanced similarity measures and super-target clustering1. 45-50 - Benjamin P. Vandervalk, Shaun D. Jackman, Anthony Raymond, Hamid Mohamadi, Chen Yang, Dean A. Attali, Justin Chu, René L. Warren, Inanç Birol:
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph. 51-58 - Pietro Hiram Guzzi, Giuseppe Agapito, Maria Teresa Di Martino, Mariamena Arbitrio, Pierfrancesco Tassone, Pierosandro Tagliaferri, Mario Cannataro:
DMET-miner: Efficient learning of association rules from genotyping data for personalized medicine. 59-62 - Diyue Bu, Haixu Tang:
Quasispecies reconstruction based on vertex coloring algorithms. 63-66 - Caihua Wang, Juan Liu, Fei Luo, Yafang Tan, Zixin Deng, Qian-Nan Hu:
Pairwise input neural network for target-ligand interaction prediction. 67-70 - Bassam AlKindy, Christophe Guyeux, Jean-François Couchot, Michel Salomon, Jacques M. Bahi:
Gene similarity-based approaches for determining core-genes of chloroplasts. 71-74 - Xiujuan Lei, Fang-Xiang Wu, Fei Wang, Aidong Zhang:
Detecting functional modules in dynamic protein-protein interaction networks using Markov Clustering and Firefly Algorithm. 75-81 - Subrata Saha, Sanguthevar Rajasekaran:
Efficient algorithms for the compression of FASTQ files. 82-85 - Xiao Wang, Guo-Zheng Li, Qiuwen Zhang, Deshuang Huang:
MultiP-SChlo: Multi-label protein subchloroplast localization prediction. 86-89 - Guillaume Fertin, Géraldine Jean, Andreea Radulescu, Irena Rusu:
DExTaR: Detection of exact tandem repeats based on the de Bruijn graph. 90-93 - Nicolas Maillet, Guillaume Collet, Thomas Vannier, Dominique Lavenier, Pierre Peterlongo:
Commet: Comparing and combining multiple metagenomic datasets. 94-98 - Ilona Kifer, Amir Ben-Dor, Zohar Yakhini, Rui Mamede Branca, Janne Lehtiö, Ping Xu:
Optimizing analytical depth and cost efficiency of IEF-LC/MS proteomics. 99-106 - Xinran Yu, Turgay Korkmaz, Timothy G. Lilburn, Hong Cai, Jianying Gu, Yufeng Wang:
Heavy path mining reveals novel protein-protein associations in the malaria parasite plasmodium falciparum. 107-112 - Chang Sik Kim, Qing Wen, Shu-Dong Zhang:
Integrative analysis of chemo-transcriptomic profiles for drug-feature specific gene expression signatures. 113-118 - Wooyoung Kim, Sheil Kurmar:
Efficient updates of network motif instances in the extended protein-protein interaction network. 119-124 - En-Shiun Annie Lee, Kwong-Sak Leung, Ho-Yin Sze-To, Terrence Chi-Kong Lau, Man Hon Wong, Andrew K. C. Wong:
Discovering protein-DNA binding cores by aligned pattern clustering. 125-130 - Osamu Maruyama, Shota Shikita:
A scale-free structure prior for Bayesian inference of Gaussian graphical models. 131-138 - Chang Sik Kim, Seungwoo Hwang, Shu-Dong Zhang:
RMA with quantile normalization mixes biological signals between different sample groups in microarray data analysis. 139-143 - Fengying Yu, Zhihao Yang, Xiaohua Hu, Yuanyuan Sun, Hongfei Lin, Jian Wang:
Data integration and supervised learning based protein complex detection method. 144-149 - Yan Yan, Anthony J. Kusalik, Fang-Xiang Wu:
NovoPair: De novo peptide sequencing for tandem mass spectra pair. 150-155 - Mehmet Tan:
Drug sensitivity prediction for cancer cell lines based on pairwise kernels and miRNA profiles. 156-161 - Kimin Oh, Taeho Hwang, Kihoon Cha, Gwan-Su Yi:
Functional module-centric interpretation of transcriptomic change between human and chimpanzee cerebral cortex. 162-167 - Changlin Fu, Zhou Tan, Rui Liu, Shiying Hao, Zhen Li, Pei Chen, Taichang Jang, Milton Merchant, John C. Whitin, Oxford Wang, Minyi Guo, Harvey J. Cohen, Lawrence Recht, Xuefeng Bruce Ling:
CSF protein dynamic driver network: At the crossroads of brain tumorigenesis. 168-175 - Ruimin Sun, Ye Tian, Xin Chen:
TAMeBS: A sensitive bisulfite-sequencing read mapping tool for DNA methylation analysis. 176-181 - Haijun Gong, Lu Feng:
Probabilistic verification of ER stress-induced signaling pathways. 182-187 - Sheehan Khan, Russell Greiner:
Budgeted transcript discovery: A framework for joint exploration and validation studies. 188-191 - Xiaoxia Liu, Zhihao Yang, Ziwei Zhou, Yuanyuan Sun, Hongfei Lin, Jian Wang:
Exploring the relation between the characteristics of protein interaction networks and the performances of computational complex detection methods. 192 - Yongkang Kim, Taesung Park:
Identifying differentially expressed genes for ordinal phenotypes. 193-196 - Bolin Chen, Min Li, Jianxin Wang, Fang-Xiang Wu:
A logistic regression based algorithm for identifying human disease genes. 197-200 - Jungrim Kim, Youngmi Yoon, Sanghyun Park, Jaegyoon Ahn, Yunku Yeu:
Discovering phenotype specific gene module using a novel biclustering algorithm in colorectal cancer. 201-204 - Yang Bai, Shufan Ji, Yadong Wang:
ESclassifier: A random forest classifier for detection of exon skipping events from RNA-Seq data. 205-208 - Amrisha Bhosle, Nagasuma Chandra:
Different cancer cell lines resistant to the same drug exhibit differences in folate pathway dynamics. 209-213 - Yiming Zuo, Guoqiang Yu, Chi Zhang, Habtom W. Ressom:
A new approach for multi-omic data integration. 214-217 - Aiping Qu, Jiamei Chen, Linwei Wang, Jingping Yuan, Fang Yang, Qingming Xiang, Ninu Maskey, Guifang Yang, Juan Liu, Yan Li:
Two-step segmentation of Hematoxylin-Eosin stained histopathological images for prognosis of breast cancer. 218-223 - Quazi Abidur Rahman, Larisa G. Tereshchenko, Matthew Kongkatong, Theodore Abraham, M. Roselle Abraham, Hagit Shatkay:
Identifying hypertrophic cardiomyopathy patients by classifying individual heartbeats from 12-lead ECG signals. 224-229 - Haider Raza, Girijesh Prasad, Yuhua Li, Hubert Cecotti:
Covariate shift-adaptation using a transductive learning model for handling non-stationarity in EEG based brain-computer interfaces. 230-236 - Rudan Xu, Yuanyuan Sun, Zhihao Yang, Bo Song, Xiaopeng Hu:
Fractal descriptor applied to the classification of HEp-2 cell patterns. 237-241 - Minghong Fang, Xiaohua Hu, Tingting He, Yan Wang, Junmin Zhao, Xianjun Shen, Jie Yuan:
Prioritizing disease-causing genes based on network diffusion and rank concordance. 242-247 - Christopher Ma, Yixin Chen, Dawn Wilkins:
Ranking of cancer genes in Markov chain model through integration of heterogeneous sources of data. 248-253 - Aidan D. Meade, Colin Clarke, Hugh J. Byrne, Fiona M. Lyng:
Selection of preprocessing methodology for multivariate regression of cellular FTIR and Raman spectra in radiobiological analyses. 254-260 - Ines V. Rodrigues, Pedro M. Ferreira, Ana R. Malheiro, Pedro Brites, Eduardo Marques Pereira, Hélder P. Oliveira:
Morphometric analysis of sciatic nerve images: A directional gradient approach. 261-266 - Basak Esin Köktürk, Bilge Karaçali:
Model-free expectation maximization for divisive hierarchical clustering of multicolor flow cytometry data. 267-272 - Min-Seok Kwon, Yongkang Kim, Seungyeoun Lee, Junghyun Namkung, Taegyun Yun, Sung-Gon Yi, Sangjo Han, Meejoo Kang, Sun Whe Kim, Jin-Young Jang, Taesung Park:
Biomarker development for pancreatic ductal adenocarcinoma using integrated analysis of mRNA and miRNA expression. 273-278 - Matthias Becker, Nadia Magnenat-Thalmann:
Muscle tissue labeling of human lower extremities in multi-channel mDixon MR imaging: Concepts and applications. 279-284 - SeungHeui Ryu, NaHyun Kwak, Do-Hoon Lee:
VISWES: A system for finding related vaccinia virus protein sequences in cancer immune therapy. 285-288 - Daekeun You, Sameer K. Antani, Dina Demner-Fushman, George R. Thoma:
Biomedical image segmentation for semantic visual feature extraction. 289-292 - Diogo Pernes, Jaime S. Cardoso, Hélder P. Oliveira:
Fitting of superquadrics for breast modelling by geometric distance minimization. 293-296 - Hui-Hui Li, Feng-Feng Shao, Guo-Zheng Li:
Semi-supervised imputation for microarray missing value estimation. 297-300 - Pedro Costa, João P. Monteiro, Hooshiar Zolfagharnasab, Hélder P. Oliveira:
Tessellation-based coarse registration method for 3D reconstruction of the female torso. 301-306 - Zhipeng Jiang, Fangfang Zhao, Yi Guan:
Developing a linguistically annotated corpus of Chinese electronic medical record. 307-310 - Junmin Zhao, Tingting He, Xiaohua Hu, Yan Wang, Xianjun Shen, Minghong Fang, Jie Yuan:
A novel disease gene prediction method based on PPI network. 311-314 - Nancy A. Huang, Yen-Jen Oyang:
Microbial abundance patterns of host obesity inferred by the structural incorporation of association measures into interpretable classifiers. 315-319 - Qinmin Vivian Hu, Liang He, Mingyao Li, Jimmy Xiangji Huang, E. Mark Haacke:
A semi-informative aware approach using topic model for medical search. 320-324 - Sílvia Bessa, Inês Domingues, Jaime S. Cardoso, Pedro Passarinho, Pedro Cardoso, Vitor Rodrigues, Fernando Lage:
Normal breast identification in screening mammography: A study on 18 000 images. 325-330 - Hong Song, Qian Zhang, Shuliang Wang:
Liver segmentation based on SKFCM and improved GrowCut for CT images. 331-334 - Darren O'Doherty, Yogesh Kumar Meena, Haider Raza, Hubert Cecotti, Girijesh Prasad:
Exploring gaze-motor imagery hybrid brain-computer interface design. 335-339 - Jiangwen Sun, Jinbo Bi, Henry R. Kranzler:
Identifying heritable composite traits from multivariate phenotypes and genome-wide SNPs. 340-343 - Kaidi Ma, Marco Canepa, James B. Strait, Hagit Shatkay:
Using unsupervised learning to determine risk level for left ventricular diastolic dysfunction. 344-347 - Moumita Bhattacharya, Deborah Ehrenthal, Hagit Shatkay:
Identifying growth-patterns in children by applying cluster analysis to electronic medical records. 348-351 - Sudeep Roy, Akhil Kumar, Ivo Provazník:
Virtual screening, ADMET profiling, molecular docking and dynamics approaches to search for potent selective natural molecule based inhibitors against metallothionein-III to study Alzheimer's disease. 352-356 - Benjamin Yee Shing Li, Lam Fat Yeung, Genke Yang:
Pathogen host interaction prediction via matrix factorization. 357-362 - Trevor DeVore, Scott Winkleblack, Bruce L. Golden, Chris Lupo:
A heterogeneous compute solution for optimized genomic selection analysis. 363-370 - Daniel Veltri, Uday Kamath, Amarda Shehu:
A novel method to improve recognition of antimicrobial peptides through distal sequence-based features. 371-378 - Lishuang Li, Rui Guo, Zhenchao Jiang, Degen Huang:
Improving Kernel-based protein-protein interaction extraction by unsupervised word representation. 379-384 - Fiona Browne, Haiying Wang, Huiru Zheng:
An integrative network-driven pipeline for the prioritization of Alzheimer's disease genes. 385-390 - Yongguo Mei, Adria Carbo, Raquel Hontecillas, Stefan Hoops, Nathan Liles, Pinyi Lu, Casandra W. Philipson, Josep Bassaganya-Riera:
ENISI MSM: A novel multi-scale modeling platform for computational immunology. 391-396 - Qiang Yu, Hongwei Huo, Xiaoyang Chen, Haitao Guo, Jeffrey Scott Vitter, Jun Huan:
An efficient motif finding algorithm for large DNA data sets. 397-402 - Qiao Wang, Fan Shi, Andrew Kowalczyk, Richard M. Campbell, Benjamin Goudey, Dave Rawlinson, Aaron Harwood, Herman L. Ferrá, Adam Kowalczyk:
GWISFI: A universal GPU interface for exhaustive search of pairwise interactions in case-control GWAS in minutes. 403-409 - Michael Andel, Jirí Kléma, Zdenek Krejcík:
Network-constrained forest for regularized omics data classification. 410-417 - Xingpeng Jiang, Xiaohua Hu:
Microbiome data integration by robust similarity network fusion. 418-423 - Alexander Schöll, Claus Braun, Markus Daub, Guido Schneider, Hans-Joachim Wunderlich:
Adaptive parallel simulation of a two-timescale model for apoptotic receptor-clustering on GPUs. 424-431 - Ana Stanescu, Doina Caragea:
Ensemble-based semi-supervised learning approaches for imbalanced splice site datasets. 432-437 - Peiyan Zhu, Junhui Shen, Dezhi Sun, Ke Xu:
Mining meaningful topics from massive biomedical literature. 438-443 - Mengwen Liu, Yuan Ling, Yuan An, Xiaohua Hu:
Relation extraction from biomedical literature with minimal supervision and grouping strategy. 444-449 - Aron Henriksson, Hercules Dalianis, Stewart Kowalski:
Generating features for named entity recognition by learning prototypes in semantic space: The case of de-identifying health records. 450-457 - Yue Zhang, Kuanquan Wang, Henggui Zhang, Yongfeng Yuan, Wei Wang:
Simulation of ventricular automaticity induced by reducing inward-rectifier K+ current. 458-462 - Hongfei Cao, Michael Phinney, Devin Petersohn, Benjamin Merideth, Chi-Ren Shyu:
MRSMRS: Mining repetitive sequences in a MapReduce setting. 463-470 - Yongnan Li, Limin Xiao:
Arithmetic computation using self-assembly of DNA tiles: Integer power over finite field GF(2n). 471-475 - Guang Zheng, Tong Wei, Changsheng Ma, Jianjun Liu, Jinyu Liu, Cheng Lu, Aiping Lu:
Exploring potential therapeutic agents of Duhuo-Jisheng-Tang for rheumatoid arthritis. 476-479 - Yuexu Jiang, Yan Wang, Wei Pang, Liang Chen, Huiyan Sun, Yanchun Liang, Enrico Blanzieri:
Essential protein identification based on essential protein-protein interaction prediction by integrated edge weights. 480-483 - Sultan Imangaliyev, Bart Keijser, Wim Crielaard, Evgeni Tsivtsivadze:
Personalized microbial network inference via co-regularized spectral clustering. 484-488 - Shuhua Chen, Juan Liu, Tao Zeng:
MMSE: A generalized coherence measure for identifying linear patterns. 489-492 - Lishuang Li, Liuke Jin, Jieqiong Zheng, Panpan Zhang, Degen Huang:
The Protein-Protein Interaction extraction based on full texts. 493-496 - Lishuang Li, Zhenchao Jiang, Degen Huang:
A general instance representation architecture for protein-protein interaction extraction. 497-500 - Nic Herndon, Karthik Tangirala, Doina Caragea:
Predicting protein localization using a domain adaptation na¨ıve Bayes classifier with burrows wheeler transform features. 501-504 - Xiaofang Wu, Zhihao Yang, Zhiheng Li, Yuanyuan Sun, Hongfei Lin, Jian Wang:
Deep graph search based disease related knowledge summarization from biomedical literature. 505 - Quangang Zheng, Haidong Lan, Weiguo Liu:
XPFS: A new parallel PROSITE profile search algorithm on Xeon Phi. 506-509 - Alexandru E. Mizeranschi, Paul Thompson, Huiru Zheng, Werner Dubitzky:
A multi-model reverse-engineering algorithm for large gene regulation networks. 510-514 - Yuan Ling, Yuan An, Xiaohua Hu:
A matching framework for modeling symptom and medication relationships from clinical notes. 515-520 - Chun-Fu Wang, Jianping Kelvin Li, Kwan-Liu Ma, Chih-Wei Huang, Yu-Chuan Li:
A visual analysis approach to cohort study of electronic patient records. 521-528 - Yun Su, Bin Hu, Lixin Xu, Hanshu Cai, Philip Moore, Xiaowei Zhang, Jing Chen:
EmotionO+: Physiological signals knowledge representation and emotion reasoning model for mental health monitoring. 529-535 - Jing Zhao, Aron Henriksson, Lars Asker, Henrik Boström:
Detecting adverse drug events with multiple representations of clinical measurements. 536-543 - David Rodriguez, Stephan Heuer, Alexandre Guerra, Wilhelm Stork, Benedikt Weber, Markus Eichler:
Towards automatic sensor-based triage for individual remote monitoring during mass casualty incidents. 544-551 - Zehui He, Jiqian Fang, Yuantao Hao, Jianting Tao:
Construct validity of the Chinese version of WHOQOL-BREF & Disabilities module in 1000 adults with disabilities: An Item Response Theory analysis. 552-555 - Zhaohui Liang, Gang Zhang, Jimmy Xiangji Huang, Qinmin Vivian Hu:
Deep learning for healthcare decision making with EMRs. 556-559 - Jia-Ming Liu, Mingyu You, Zheng Wang, Guo-Zheng Li, Xianghuai Xu, Zhongmin Qiu:
Cough detection using deep neural networks. 560-563 - Athanasia Polychronopoulou, Zoran Obradovic:
Hospital pricing estimation by Gaussian conditional random fields based regression on graphs. 564-567 - Shuo Xu, Guixin Wu, Qijie Zhao, Dawei Tu, Huiru Zheng:
Human-machine-environment cyber-physical system and hierarchical task planning to support independent living. 568-573 - Qian Zhu, Hongfang Liu, Christopher G. Chute, Matthew Ferber:
Genetic testing knowledge base (GTKB) towards individualized genetic test recommendation - An experimental study. 574-577 - Yizhou Zang, Yuan An, Xiaohua Tony Hu:
Automatically recommending healthy living programs to patients with chronic diseases through hybrid content-based and collaborative filtering. 578-582 - Keith Feldman, Nitesh V. Chawla:
Admission duration model for infant treatment (ADMIT). 583-587 - Robert E. Schuler, Carl Kesselman, Karl Czajkowski:
Digital asset management for heterogeneous biomedical data in an era of data-intensive science. 588-592 - Fan Yang, Xiaohui Yu, George Karypis:
Signaling adverse drug reactions with novel feature-based similarity model. 593-596 - Xi Wen, Hong Wang, Weiming Zhai:
Automatic and fast registration method for image-guided surgery. 597-600