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Journal of Clinical Bioinformatics, Volume 1
Volume 1, 2011
- Xiangdong Wang, Lance A. Liotta:
Clinical bioinformatics: a new emerging science. 1 - Christian Baumgartner
, Melanie Osl, Michael Netzer
, Daniela Baumgartner
:
Bioinformatic-driven search for metabolic biomarkers in disease. 2 - Kung-Hao Liang, Jun-Jeng Fen, Hsien-Hsun Chang, Hsei-Wei Wang, Yuchi Hwang:
A base-calling algorithm for Tm-shifted melting curve SNP assay. 3 - Richard M. Gronostajski, Joseph Guaneri, Dong Lee, Steven M. Gallo
:
The NFI-Regulome Database: A tool for annotation and analysis of control regions of genes regulated by Nuclear Factor I transcription factors. 4 - Nagasuma Chandra
, Raghu Bhagavat, Eshita Sharma
, P. Sreekanthreddy, Kumaravel Somasundaram:
Virtual screening, identification and experimental testing of novel inhibitors of PBEF1/Visfatin/NMPRTase for glioma therapy. 5 - Eri Kawata, Eishi Ashihara, Taira Maekawa:
RNA interference against polo-like kinase-1 in advanced non-small cell lung cancers. 6 - Melinda Rezeli, Ákos Végvári, Thomas E. Fehniger, Thomas Laurell
, György Marko-Varga:
Moving towards high density clinical signature studies with a human proteome catalogue developing multiplexing mass spectrometry assay panels. 7 - Mosmi Surati, Matthew Robinson, Suvobroto Nandi, Leonardo Faoro, Carley Demchuk, Cleo E. Rolle, Rajani Kanteti, Benjamin D. Ferguson, Rifat Hasina, Tara C. Gangadhar, April K. Salama
, Qudsia Arif, Colin Kirchner, Eneida A. Mendonça, Nicholas Campbell, Suwicha Limvorasak
, Victoria Villaflor, Thomas A. Hensing, Thomas Krausz, Everett E. Vokes, Aliya N. Husain, Mark K. Ferguson, Theodore G. Karrison, Ravi Salgia:
Proteomic characterization of non-small cell lung cancer in a comprehensive translational thoracic oncology database. 8 - Karl G. Kugler, Werner O. Hackl
, Laurin A. J. Mueller, Heidi Fiegl
, Armin Graber, Ruth M. Pfeiffer:
The impact of sample storage time on estimates of association in biomarker discovery studies. 9 - Atsushi Shiozaki, Mingyao Liu
:
Roles of XB130, a novel adaptor protein, in cancer. 10 - In-Hee Lee
, Gerald H. Lushington
, Mahesh Visvanathan:
A filter-based feature selection approach for identifying potential biomarkers for lung cancer. 11 - Soumyaroop Bhattacharya, Shivraj Tyagi, Sorachai Srisuma, Dawn L. DeMeo, Steven Shapiro, Raphael Bueno, Edwin K. Silverman, John J. Reilly, Thomas J. Mariani:
Peripheral blood gene expression profiles in COPD subjects. 12 - Jill S. Barnholtz-Sloan
, Mark R. Chance:
Frontiers of Oncology: Biobanking Resources for the 21st Century. 13 - György Marko-Varga:
BioBanking - The Holy Grail of novel drug and diagnostic developments? 14 - Guangchuang Yu
, Qing-Yu He
:
Functional similarity analysis of human virus-encoded miRNAs. 15 - Elena López, Isabel López, Julia Sequí, Antonio Ferreira:
Discovering and validating unknown phospho-sites from p38 and HuR protein kinases in vitro by Phosphoproteomic and Bioinformatic tools. 16 - Stephanie D. Byrum, Sean D. Taverna
, Alan J. Tackett:
Quantitative analysis of histone exchange for transcriptionally active chromatin. 17 - Teeradache Viangteeravat, Matthew N. Anyanwu, Venkateswara Nagisetty, Emin Kuscu:
Automated generation of massive image knowledge collections using Microsoft Live Labs Pivot to promote neuroimaging and translational research. 18 - Morihito Takita
, Yuji Tanaka, Yuko Kodama, Naoko Murashige, Nobuyo Hatanaka, Yukiko Kishi, Tomoko Matsumura, Yukio Ohsawa, Masahiro Kami:
Data mining of mental health issues of non-bone marrow donor siblings. 19 - Malte Mader
, Ronald Simon
, Sascha Steinbiss
, Stefan Kurtz:
FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context. 20 - Gürkan Bebek, Mohammed Orloff, Charis Eng:
Microenvironmental genomic alterations reveal signaling networks for head and neck squamous cell carcinoma. 21 - Prakash M. Nadkarni, Rowena Kemp, Chirag Parikh
:
Leveraging a clinical research information system to assist biospecimen data and workflow management: a hybrid approach. 22 - Masaharu Nomura, Tetsuya Fukuda, Kiyonaga Fujii, Takeshi Kawamura, Hiromasa Tojo, Makoto Kihara, Yasuhiko Bando, Adi F. Gazdar, Masahiro Tsuboi, Hisashi Oshiro
, Toshitaka Nagao, Tatsuo Ohira, Norihiko Ikeda, Noriko Gotoh
, Harubumi Kato, György Marko-Varga, Toshihide Nishimura:
Preferential expression of potential markers for cancer stem cells in large cell neuroendocrine carcinoma of the lung. An FFPE proteomic study. 23 - Ákos Végvári, Charlotte Welinder
, Henrik Lindberg, Thomas E. Fehniger, György Marko-Varga:
Biobank resources for future patient care: developments, principles and concepts. 24 - Alex Soltermann
, Sandra Kilgus-Hawelski, Silvia Behnke, Martina Storz, Holger Moch, Beata Bode:
Automated ERCC1 immunochemistry on hybrid cytology/tissue microarray of malignant effusions: evaluation of antibodies 8F1 and D-10. 25 - Elena López, Jan-Jaap Wesselink, Isabel López, Jesús Mendieta
, Paulino Gómez-Puertas
, Sarbelio Muñoz:
Technical phosphoproteomic and bioinformatic tools useful in cancer research. 26 - Konstantina Dimitrakopoulou
, Charalampos Tsimpouris, George Papadopoulos, Claudia Pommerenke, Esther Wilk, Kyriakos N. Sgarbas
, Klaus Schughart
, Anastasios Bezerianos:
Dynamic gene network reconstruction from gene expression data in mice after influenza A (H1N1) infection. 27 - Xiangdong Wang:
Role of clinical bioinformatics in the development of network-based Biomarkers. 28 - Daniël B. van Schalkwijk
, Ben van Ommen, Andreas P. Freidig, Jan van der Greef, Albert A. de Graaf
:
Diagnostic markers based on a computational model of lipoprotein metabolism. 29 - Duo-jiao Wu, Bi-jun Zhu, Xiang-Dong Wang:
Metabonomics-based omics study and atherosclerosis. 30 - Claudia Landi
, Elena Bargagli
, Barbara Magi, Antje Prasse
, Joachim Muller-Quernheim, Luca Bini
, Paola Rottoli:
Proteome analysis of bronchoalveolar lavage in pulmonary langerhans cell histiocytosis. 31 - Teeradache Viangteeravat, Matthew N. Anyanwu, Venkateswara Nagisetty, Emin Kuscu, Mark Sakauye, Duojiao Wu:
Clinical data integration of distributed data sources using Health Level Seven (HL7) v3-RIM mapping. 32 - Yoshitaka Kimori:
Mathematical morphology-based approach to the enhancement of morphological features in medical images. 33 - Michael Netzer, Klaus Weinberger
, Michael Handler, Michael Seger, Xiaocong Fang, Karl G. Kugler, Armin Graber, Christian Baumgartner
:
Profiling the human response to physical exercise: a computational strategy for the identification and kinetic analysis of metabolic biomarkers. 34 - Hong Chen
, Xiangdong Wang:
Significance of bioinformatics in research of chronic obstructive pulmonary disease. 35 - Emmanouil G. Sifakis
, George I. Lambrou
, Andriana Prentza, Spiros Vlahopoulos
, Dimitris Koutsouris, Fotini Tzortzatou-Stathopoulou, Aristotelis A. Chatziioannou:
Elucidating the identity of resistance mechanisms to prednisolone exposure in acute lymphoblastic leukemia cells through transcriptomic analysis: A computational approach. 36 - Mark T. W. Ebbert, Roy R. L. Bastien, Kenneth M. Boucher
, Miguel Martín
, Eva Carrasco, Rosalía Caballero, Inge J. Stijleman, Philip S. Bernard, Julio C. Facelli
:
Characterization of uncertainty in the classification of multivariate assays: application to PAM50 centroid-based genomic predictors for breast cancer treatment plans. 37
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