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Mikael Bodén
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2020 – today
- 2022
- [j42]Gabriel Foley
, Ariane Mora
, Connie M. Ross
, Scott Bottoms
, Leander Sützl
, Marnie L. Lamprecht, Julian Zaugg
, Alexandra Essebier, Brad Balderson, Rhys Newell
, Raine E. S. Thomson
, Bostjan Kobe
, Ross T. Barnard
, Luke Guddat, Gerhard Schenk
, Jörg Carsten, Yosephine Gumulya, Burkhard Rost
, Dietmar Haltrich
, Volker Sieber, Elizabeth M. J. Gillam
, Mikael Bodén
:
Engineering indel and substitution variants of diverse and ancient enzymes using Graphical Representation of Ancestral Sequence Predictions (GRASP). PLoS Comput. Biol. 18(10): 1010633 (2022) - 2020
- [j41]Timothy O'Connor, Charles E. Grant, Mikael Bodén
, Timothy L. Bailey
:
T-Gene: improved target gene prediction. Bioinform. 36(12): 3902-3904 (2020)
2010 – 2019
- 2019
- [j40]Maria Littmann
, Tatyana Goldberg, Sebastian Seitz, Mikael Bodén
, Burkhard Rost
:
Detailed prediction of protein sub-nuclear localization. BMC Bioinform. 20(1): 205:1-205:15 (2019) - [j39]Maria Littmann
, Tatyana Goldberg, Sebastian Seitz, Mikael Bodén
, Burkhard Rost
:
Correction to: Detailed prediction of protein sub-nuclear localization. BMC Bioinform. 20(1): 727 (2019) - 2018
- [j38]Stephen J. Fletcher, Mikael Bodén
, Neena Mitter
, Bernard J. Carroll
:
SCRAM: a pipeline for fast index-free small RNA read alignment and visualization. Bioinform. 34(15): 2670-2672 (2018) - [j37]Julian Zaugg
, Yosephine Gumulya
, Mikael Bodén
, Alan E. Mark
, Alpeshkumar K. Malde
:
Effect of Binding on Enantioselectivity of Epoxide Hydrolase. J. Chem. Inf. Model. 58(3): 630-640 (2018) - [j36]Michael Bernhofer
, Tatyana Goldberg, Silvana Wolf, Mohamed Ahmed, Julian Zaugg
, Mikael Bodén
, Burkhard Rost
:
NLSdb - major update for database of nuclear localization signals and nuclear export signals. Nucleic Acids Res. 46(Database-Issue): D503-D508 (2018) - 2017
- [j35]Ralph Patrick
, Bostjan Kobe
, Kim-Anh Lê Cao
, Mikael Bodén
:
PhosphoPICK-SNP: quantifying the effect of amino acid variants on protein phosphorylation. Bioinform. 33(12): 1773-1781 (2017) - [j34]Julian Zaugg
, Yosephine Gumulya
, Alpeshkumar K. Malde
, Mikael Bodén
:
Learning epistatic interactions from sequence-activity data to predict enantioselectivity. J. Comput. Aided Mol. Des. 31(12): 1085-1096 (2017) - 2015
- [j33]Minh Duc Cao
, Sureshkumar Balasubramanian
, Mikael Bodén
:
Sequencing technologies and tools for short tandem repeat variation detection. Briefings Bioinform. 16(2): 193-204 (2015) - [j32]Ralph Patrick
, Kim-Anh Lê Cao
, Bostjan Kobe
, Mikael Bodén
:
PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events. Bioinform. 31(3): 382-389 (2015) - 2014
- [j31]Jakub Mazgut, Peter Tiño
, Mikael Bodén
, Hong Yan
:
Dimensionality reduction and topographic mapping of binary tensors. Pattern Anal. Appl. 17(3): 497-515 (2014) - 2013
- [j30]Ahmed M. Mehdi, Muhammad Shoaib B. Sehgal, Bostjan Kobe
, Timothy L. Bailey, Mikael Bodén
:
DLocalMotif: a discriminative approach for discovering local motifs in protein sequences. Bioinform. 29(1): 39-46 (2013) - [j29]Patricio Oyarzún
, Jonathan J. Ellis
, Mikael Bodén
, Bostjan Kobe
:
PREDIVAC: CD4+ T-cell epitope prediction for vaccine design that covers 95% of HLA class II DR protein diversity. BMC Bioinform. 14: 52 (2013) - 2012
- [j28]Ralph Patrick
, Kim-Anh Lê Cao
, Melissa J. Davis
, Bostjan Kobe
, Mikael Bodén
:
Mapping the stabilome: a novel computational method for classifying metabolic protein stability. BMC Syst. Biol. 6: 60 (2012) - [j27]Kai Willadsen, Nurul Mohamad, Mikael Bodén
:
NSort/DB: An Intranuclear Compartment Protein Database. Genom. Proteom. Bioinform. 10(4): 226-229 (2012) - [j26]Praveen K. Madala, David P. Fairlie
, Mikael Bodén
:
Matching Cavities in G Protein-Coupled Receptors to Infer Ligand-Binding Sites. J. Chem. Inf. Model. 52(5): 1401-1410 (2012) - 2011
- [j25]Ahmed M. Mehdi, Muhammad Shoaib B. Sehgal, Bostjan Kobe
, Timothy L. Bailey, Mikael Bodén
:
A probabilistic model of nuclear import of proteins. Bioinform. 27(9): 1239-1246 (2011) - [j24]Denis C. Bauer
, Kai Willadsen, Fabian A. Buske, Kim-Anh Lê Cao
, Timothy L. Bailey, Graham Dellaire
, Mikael Bodén
:
Sorting the nuclear proteome. Bioinform. 27(13): 7-14 (2011) - 2010
- [j23]Fabian A. Buske, Mikael Bodén
, Denis C. Bauer
, Timothy L. Bailey:
Assigning roles to DNA regulatory motifs using comparative genomics. Bioinform. 26(7): 860-866 (2010) - [j22]Timothy L. Bailey, Mikael Bodén
, Tom Whitington, Philip Machanick
:
The value of position-specific priors in motif discovery using MEME. BMC Bioinform. 11: 179 (2010) - [j21]Nurul Mohamad, Mikael Bodén
:
The proteins of intra-nuclear bodies: a data-driven analysis of sequence, interaction and expression. BMC Syst. Biol. 4: 44 (2010) - [j20]Denis C. Bauer
, Fabian A. Buske, Timothy L. Bailey, Mikael Bodén
:
Predicting SUMOylation sites in developmental transcription factors of Drosophila melanogaster. Neurocomputing 73(13-15): 2300-2307 (2010) - [j19]Mikael Bodén
, Graham Dellaire
, Kevin Burrage
, Timothy L. Bailey:
A Bayesian Network Model of Proteins' Association with Promyelocytic Leukemia (PML) Nuclear Bodies. J. Comput. Biol. 17(4): 617-630 (2010) - [j18]Liwen You, Vladimir Brusic
, Marcus Gallagher
, Mikael Bodén
:
Using Gaussian Process with Test Rejection to Detect T-Cell Epitopes in Pathogen Genomes. IEEE ACM Trans. Comput. Biol. Bioinform. 7(4): 741-751 (2010) - [c17]Jakub Mazgut, Peter Tiño
, Mikael Bodén
, Hong Yan
:
Multilinear Decomposition and Topographic Mapping of Binary Tensors. ICANN (1) 2010: 317-326
2000 – 2009
- 2009
- [j17]Timothy L. Bailey, Mikael Bodén
, Fabian A. Buske, Martin C. Frith
, Charles E. Grant, Luca Clementi, Jingyuan Ren, Wilfred W. Li, William Stafford Noble:
MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37(Web-Server-Issue): 202-208 (2009) - [j16]Fabian A. Buske, Stefan Maetschke
, Mikael Bodén
:
It's about time: Signal recognition in staged models of protein translocation. Pattern Recognit. 42(4): 567-574 (2009) - [c16]Isye Arieshanti, Mikael Bodén
, Stefan Maetschke
, Fabian A. Buske:
Detecting sequence and structure homology via an integrative kernel: A case-study in recognizing enzymes. CIBCB 2009: 46-52 - 2008
- [j15]Mikael Bodén
, Rohan D. Teasdale
:
Determining Nucleolar Association from Sequence by Leveraging Protein-Protein Interactions. J. Comput. Biol. 15(3): 291-304 (2008) - [c15]Mikael Bodén:
Predicting Nucleolar Proteins Using Support-Vector Machines. APBC 2008: 19-28 - [c14]Denis C. Bauer
, Fabian A. Buske, Mikael Bodén:
Predicting SUMOylation Sites. PRIB 2008: 28-40 - 2007
- [j14]Marie Bodén
, Mikael Bodén
:
Evolving spelling exercises to suit individual student needs. Appl. Soft Comput. 7(1): 126-135 (2007) - [j13]Jakkarin Suksawatchon, Chidchanok Lursinsap, Mikael Bodén
:
Computing the Reversal Distance between genomes in the Presence of Multi-gene Families via Binary Integer Programming. J. Bioinform. Comput. Biol. 5(1): 117-133 (2007) - [c13]Stefan Maetschke
, Marcus Gallagher
, Mikael Bodén:
A Comparison of Sequence Kernels for Localization Prediction of Transmembrane Proteins. CIBCB 2007: 367-372 - [c12]Liwen You, Ping Zhang
, Mikael Bodén, Vladimir Brusic
:
Understanding Prediction Systems for HLA-Binding Peptides and T-Cell Epitope Identification. PRIB 2007: 337-348 - [p1]Peter Tiño, Barbara Hammer
, Mikael Bodén
:
Markovian Bias of Neural-based Architectures With Feedback Connections. Perspectives of Neural-Symbolic Integration 2007: 95-133 - 2006
- [j12]Mikael Bodén
, Timothy L. Bailey:
Identifying sequence regions undergoing conformational change via predicted continuum secondary structure. Bioinform. 22(15): 1809-1814 (2006) - [j11]Mikael Bodén
, Zheng Yuan, Timothy L. Bailey:
Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures. BMC Bioinform. 7: 68 (2006) - [j10]Denis C. Bauer
, Mikael Bodén
, Ricarda Thier, Elizabeth M. J. Gillam
:
STAR: predicting recombination sites from amino acid sequence. BMC Bioinform. 7: 437 (2006) - [c11]Mikael Bodén, John Hawkins
:
Evolving discriminative motifs for recognizing proteins imported to the peroxisome via the PTS2 pathway. IEEE Congress on Evolutionary Computation 2006: 2750-2755 - 2005
- [j9]Mikael Bodén
, John Hawkins
:
Prediction of subcellular localization using sequence-biased recurrent networks. Bioinform. 21(10): 2279-2286 (2005) - [j8]John Hawkins
, Mikael Bodén
:
The Applicability of Recurrent Neural Networks for Biological Sequence Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 2(3): 243-253 (2005) - [j7]Mikael Bodén
, John Hawkins
:
Improved access to sequential motifs: a note on the architectural bias of recurrent networks. IEEE Trans. Neural Networks 16(2): 491-494 (2005) - [c10]Mikael Bodén, John Hawkins:
Detecting residues in targeting peptides. APBC 2005: 131-140 - [c9]Stefan Maetschke, Michael Towsey, Mikael Bodén:
BLOMAP: An encoding of amino acids which improves signal peptide cleavage site prediction. APBC 2005: 141-150 - [c8]Jakkarin Suksawatchon, Chidchanok Lursinsap, Mikael Bodén:
Heuristic Algorithm for Computing Reversal Distance with MultiGene Families via Binary Integer Programming. CIBCB 2005: 187-193 - [c7]John Hawkins, Mikael Bodén:
Predicting Peroxisomal Proteins. CIBCB 2005: 469-474 - [c6]Denis C. Bauer, Mikael Bodén, Ricarda Thier, Zheng Yuan:
Predicting Structural Disruption of Proteins Caused by Crossover (based on Amino Acid Sequence). CIBCB 2005: 514-520 - [c5]Mark Wakabayashi, John Hawkins
, Stefan Maetschke
, Mikael Bodén:
Exploiting Sequence Dependencies in the Prediction of Peroxisomal Proteins. IDEAL 2005: 454-461 - 2004
- [j6]Mikael Bodén
:
Generalization by symbolic abstraction in cascaded recurrent networks. Neurocomputing 57: 87-104 (2004) - 2003
- [j5]Mikael Bodén
, Alan D. Blair:
Learning the Dynamics of Embedded Clauses. Appl. Intell. 19(1-2): 51-63 (2003) - [c4]Mikael Bodén
:
Using evolutionary noise to improve prediction of rapidly evolving targeting peptides. IEEE Congress on Evolutionary Computation 2003: 2821-2828 - 2002
- [j4]Mikael Bodén
, Janet Wiles
:
On learning context-free and context-sensitive languages. IEEE Trans. Neural Networks 13(2): 491-493 (2002) - [c3]Mikael Bodén:
Generalization by structural properties from sparse nested symbolic data. ESANN 2002: 377-382 - 2000
- [j3]Mikael Bodén
, Lars Niklasson:
Semantic systematicity and context in connectionist networks. Connect. Sci. 12(2): 111-142 (2000) - [j2]Mikael Bodén
, Janet Wiles
:
Context-free and context-sensitive dynamics in recurrent neural networks. Connect. Sci. 12(3-4): 197-210 (2000) - [c2]Mikael Bodén, Henrik Jacobsson, Tom Ziemke:
Evolving context-free language predictors. GECCO 2000: 1033-1040
1990 – 1999
- 1997
- [b1]Mikael Bodén:
Context-sensitive connectionist representations for nonmonotonic inheritance. University of Exeter, UK, 1997 - 1996
- [c1]Mikael Bodén
:
A Connectionist Variation of Inheritance. ICANN 1996: 353-358 - 1993
- [j1]Mikael Bodén
, Lars Niklasson:
Editorial. Artif. Intell. Rev. 7(5): 259-260 (1993)
Coauthor Index
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last updated on 2024-08-05 21:18 CEST by the dblp team
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