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ORCIDJournal of Open Source Software, Volume 10
Volume 10, Number 105, January 2025
- Geert Raaijmakers
, Nathan Rutherford, Patrick Timmerman, Tuomo E. Salmi, Anna L. Watts, Chanda Prescod-Weinstein, Isak Svensson, Melissa Mendes:
NEoST: A Python package for nested sampling of the neutron star equation of state. 6003 - Hajime Senuma:
mmh3: A Python extension for MurmurHash3. 6124 - Flaminia Catalli, Matteo Spada:
ProMCDA: A Python package for Probabilistic Multi-Criteria Decision Analysis. 6190 - Theresa Klütz, Kevin Knosala, Johannes Behrens, Rachel Maier, Maximilian Hoffmann, Noah Pflugradt, Detlef Stolten:
ETHOS.FINE: A Framework for Integrated Energy System Assessment. 6274 - Stijn Wittouck, Tim Van Rillaer, Wenke Smets, Sarah Lebeer:
Tidytacos: An R package for analyses on taxonomic composition of microbial communities. 6313 - Anna Tartaglia, Kazunori Akiyama, Paul Tiede:
ScatteringOptics.jl: An Interstellar Scattering Framework in the Julia Programming Language. 6354 - David Tschumperlé, Sébastien Fourey, Garry Osgood:
G'MIC: An Open-Source Self-Extending Framework for Image Processing. 6618 - Sara Ha, Simona Onori:
COBRAPRO: A MATLAB toolbox for Physics-based Battery Modeling and Co-simulation Parameter Optimization. 6803 - Daniel J. Asay, Timothy M. O'Keefe, Randy L. Buckner, Ross W. Mair:
DWIQC: A Python package for preprocessing and quality assurance of diffusion weighted images. 6974 - Wesley H. Holliday, Eric Pacuit:
pref_voting: The Preferential Voting Tools package for Python. 7020 - Sinan Ozaydin, Lu Li, Utpal Singh, Patrice Rey, Maria Constanza Manassero:
pide: Petrophysical Interpretation tools for geoDynamic Exploration. 7021 - Niklas S. Neher, Erik Faulhaber, Sven Berger, Gregor J. Gassner, Michael Schlottke-Lakemper:
TrixiParticles.jl: Particle-based multiphysics simulation in Julia. 7044 - Raoul Schram, Samuel Spithorst, Erik-Jan van Kesteren:
Metasyn: Transparent Generation of Synthetic Tabular Data with Privacy Guarantees. 7099 - Robert M. Cook, Md. Asaduzzaman, Sarahjane Jones:
Deident: An R package for data anonymization. 7157 - Daniel Otto de Mentock, Sharan Roongta, Franz Roters, Philip Eisenlohr, Martin Diehl:
A Python Library for Pre- and Post-Processing of DAMASK Simulations. 7164 - John M. Volk, Christian Dunkerly, Christopher Pearson, Charles G. Morton, Justin L. Huntington:
gridwxcomp: A Python package to evaluate and interpolate biases between station and gridded weather data. 7178 - Hause Lin, Tawab Safi:
ollamar: An R package for running large language models. 7211 - Jacob Tiegs, Julia Raykin, Ilia Rochlin:
BART-Survival: A Bayesian machine learning approach to survival analyses in Python. 7213 - Cedric Kulbach, Lucas Cazzonelli, Hoang-Anh Ngo, Max Halford, Saulo Martiello Mastelini:
DeepRiver: A Deep Learning Library for Data Streams. 7226 - Sajjad Khan, Sandeep Pallikkuth, David J. Schodt, Marjolein B. m. Meddens, Hanieh Mazloom-Farsibaf, Michael J. Wester, Sheng Liu, Ellyse Taylor, Mohamadreza Fazel, Farzin Farzam, Keith A. Lidke:
A MATLAB-based Instrument Control (MIC) package for fluorescence imaging. 7275 - Gareth Cross:
wrenfold: Symbolic code generation for robotics. 7303 - Felix Böhm, Moritz Makowski, Patrick Aigner, Jia Chen:
Tenta: Remote and Real-Time Sensor Network Management. 7311 - Sevgi Akten Karakaya, Mehmet Hakan Satman:
pycellga: A Python package for improved cellular genetic algorithms. 7322 - David Landa-Marbán, Tor Harald Sandve:
pyopmspe11: A Python framework using OPM Flow for the SPE11 benchmark project. 7357 - Brice Letcher:
delfies: a Python package for the detection of DNA breakpoints with neo-telomere addition. 7385 - Tom Wagg, Katelyn Breivik, Mathieu Renzo, Adrian M. Price-Whelan:
cogsworth: A Gala of COSMIC proportions combining binary stellar evolution and galactic dynamics. 7400 - Logan Mondal Bhamidipaty, Mykel J. Kochenderfer, Trevor Hastie:
ExpFamilyPCA.jl: A Julia Package for Exponential Family Principal Component Analysis. 7403 - Yuefan Ji, Matthew Murbach, Daniel T. Schwartz:
nleis.py: A Nonlinear Electrochemical Impedance Analysis Toolbox. 7424 - Elmongi Elbellili, Daan Huybrechs, Ben Lauwens:
QuantizedSystemSolver: A discontinuous ODE system solver in Julia. 7434 - Mark Zolotas, Philip Long, Taskin Padir:
robot_collision_checking: A Lightweight ROS 2 Interface to FCL (Flexible Collision Library). 7473 - Daniel S. Stich, Julie L. Nieland, Timothy F. Sheehan:
dia: An R package for the National Oceanic and Atmospheric Administration dam impact analysis. 7475 - Joe Thorley, Rebecca Fisher, David Fox, Carl Schwarz:
ssdtools v2: An R package to fit Species Sensitivity Distributions. 7492 - Lionel Constantin, Brunner Dominik, Joel Thanwerdas, Corina Keller, Michael Steiner, Erik Koene:
Emiproc: A Python package for emission inventory processing. 7509 - Rohan Babbar, Matteo Ravasi, Yuxi Hong:
PyLops-MPI - MPI Powered PyLops with mpi4py. 7512 - Peter Gadomski, Preston J. Hartzell:
antimeridian: A Python package for correcting geometries that cross the 180th meridian. 7530 - Vladimir Mikheev, Benedikt V. Ehinger:
UnfoldMakie.jl: EEG/ERP visualization package. 7560 - Clemens Eppner, Adithyavairavan Murali, Caelan Reed Garrett, Rowland O'Flaherty, Tucker Hermans, Wei Yang, Dieter Fox:
scene_synthesizer: A Python Library for Procedural Scene Generation in Robot Manipulation. 7561 - Dylan Bouchard, Mohit Singh Chauhan, David Skarbrevik, Viren Bajaj, Zeya Ahmad:
LangFair: A Python Package for Assessing Bias and Fairness in Large Language Model Use Cases. 7570 - Jed Homer, Oliver Friedrich:
SBIAX: Density-estimation simulation-based inference in JAX. 7606
Volume 10, Number 106, February 2025
- Tim Furlan, Jonathan Stollberg, Andreas Menzel:
Paraqus: Exporting Finite Element Simulation Results from Abaqus to VTK. 5729 - Maggie Voetberg, Ashia Livaudais, Becky Nevin, Omari Paul, Brian Nord:
DeepBench: A simulation package for physical benchmarking data. 6774 - Johannes Holke, Johannes Markert, David Knapp, Lukas Dreyer, Sandro Elsweijer, Niklas Böing, Ioannis Lilikakis, Jakob Fussbroich, Tabea Leistikow, Florian Becker, Veli Uenlue, Ole Albers, Carsten Burstedde, Achim Basermann, Chiara Hergl, Weber Julia, Kathrin Schoenlein, Jonas Ackerschott, Andreev Evgenii, Zoltan Csati, Alexandra Dutka, Benedict Geihe, Pierre Kestener, Andrew Kirby, Hendrik Ranocha, Michael Schlottke-Lakemper:
t8code - modular adaptive mesh refinement in the exascale era. 6887 - Manuel Rausch, Sascha Meyen, Sebastian Hellmann:
statConfR: An R Package for Static Models of Decision Confidence and Metacognition. 6966 - Theresa Pollinger, Marcel Hurler, Alexander Van Craen, Michael Obersteiner, Dirk Pflüger:
DisCoTec: Distributed higher-dimensional HPC simulations with the sparse grid combination technique. 7018 - John M. Aiken, Gareth Jones, Xueqing Yin, Anrijs Abele, Christopher J. Woods, Richard M. Westaway, Jonathan L. Bamber:
4DModeller: a spatio-temporal modelling package. 7047 - Robin Chartrand, Robert Fajber, Georgy E. Manucharyan:
NcCut: A NetCDF Viewer and Transecting Tool. 7185 - Maximilian Wolf, Selina Götz, Georg K. H. Madsen, Theodoros Dimopoulos:
COHESIVM: Combinatorial h+/e- Sample Investigation using Voltaic Measurements. 7291 - Joseph Emile Honour Percival, Benjamin Palsa Leamon:
PyForestScan: A Python library for calculating forest structural metrics from lidar point cloud data. 7314 - Jennifer A. Clark, Nathan Duff, Andrew Abi Mansour, Erik E. Santiso:
DESPASITO: A Python Package for SAFT EOS Parametrization and Thermodynamic Calculations. 7365 - Jan F. Wiegner, Julia L. Tiggeloven, Luca Bertoni, Inge M. Ossentjuk, Matteo Gazzani:
AdOpT-NET0: A technology-focused Python package for the optimization of multi-energy systems. 7402 - Jonathan M. Waldrop, Ryan M. Richard:
Sigma: Uncertainty Propagation for C++. 7404 - Thomas Holland, Daniel Cummins, Monica Marinescu:
PyProBE: Python Processing for Battery Experiments. 7474 - Raphaël Prat, Thierry Carrard, Lhassan Amarsid, Vincent Richefeu, Carlo-Elia Doncecchi, Paul Lafourcade, Guillaume Latu, Jean-Mathieu Vanson:
ExaDEM: a HPC application based on exaNBody targeting scalable DEM simulations with complex particle shapes. 7484 - Ankush Aggarwal, Ross Williams, Claire Rosnel, Silvia Renon, Jude M. Hussain, André F. Schmidt, Shiting Huang, Sean McGinty, Andrew McBride:
pyMechT: A Python package for mechanics of soft tissues. 7490 - Darren J. Wilkinson:
jax-smfsb: A Python library for stochastic systems biology modelling and inference. 7491 - Dingshan Deng, Ilaria Pascucci, Rachel B. Fernandes:
ysoisochrone: A Python package to estimate masses and ages for YSOs. 7493 - David O'Gara, Mickaël Binois, Roman Garnett, Ross A. Hammond:
hetGPy: Heteroskedastic Gaussian Process Modeling in Python. 7518 - David Woodburn:
r3f: Rotation of 3-dimensional Reference Frames. 7534 - Gabriel Couture, Yannick Lemaréchal, Philippe Després:
PyOrthanc: A Python Interface for Orthanc DICOM Servers. 7562 - Mistral Contrastin, Raoul Hidalgo Charman, Matthew Danish, Benjamin Orchard, Dominic Orchard, Andrew Rice, Jason Xu:
fortran-src: Fortran static analysis infrastructure. 7571 - Salvador V. Balkus, Nima S. Hejazi:
CausalTables.jl: Simulating and storing data for statistical causal inference in Julia. 7580 - Fábio Madeira, Nandana Madhusoodanan, Joonheung Lee, Alberto Eusebi, Ania Niewielska, Sarah Butcher:
Taxonomy Resolver: A Python package for building and filtering taxonomy trees. 7604 - Markus Pichler:
idf-analysis: Heavy rainfall intensity as a function of duration and return period. 7607 - Toru Seo:
UXsim: lightweight mesoscopic traffic flow simulator in pure Python. 7617 - Simon R. Parker, Linda Vesel, Eric O. Ohuma:
gigs: A package for standardising fetal, neonatal, and child growth assessment. 7655
Volume 10, Number 107, March 2025
- Joshua Benjamin Schramm, Marcel Lichters:
validateHOT - an R package for the analysis of holdout/validation tasks and other choice modeling tools. 6708 - Evaristo Rojas-Mayoral, Braulio Rojas-Mayoral, Federico A. Méndez-Sánchez:
NERD: Numerical Estimation of Rodenticide Density. 6736 - Martin Rätz, Fabian Wüllhorst, Rita Streblow, Dirk Müller:
AixWeather: A Weather Data Generation Tool for Building Energy System Simulations. Pull, Transform, Export. 7344 - Simon Sekavcnik, Kareem H. El-Safty, Janis Nötzel:
PhotonWeave. 7468 - Steven Golovkine:
FDApy: a Python package for functional data. 7526 - Truls Flatberg, Julian Straus, Lars Hellemo:
TimeStruct.jl - flexible multi-horizon time modelling in optimization models. 7578
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