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Publication search results
found 31 matches
- 2022
- Rafael Hidalgo, Anthony DeVito, Nesreen Salah, Aparna S. Varde, Robert W. Meredith:
Inferring Phylogenetic Relationships using the Smith-Waterman Algorithm and Hierarchical Clustering. IEEE Big Data 2022: 5910-5914 - Eleonora Rachtman, Shahab Sarmashghi, Vineet Bafna, Siavash Mirarab:
Uncertainty Quantification Using Subsampling for Assembly-Free Estimates of Genomic Distance and Phylogenetic Relationships. RECOMB 2022: 366-368 - Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol:
Protein language models trained on multiple sequence alignments learn phylogenetic relationships. CoRR abs/2203.15465 (2022) - 2018
- Manuel Villalobos-Cid, Márcio Dorn, Mario Inostroza-Ponta:
Understanding the Relationship Between Decision and Objective Space in the Multi-Objective Phylogenetic Inference Problem. CEC 2018: 1-8 - 2015
- Xunlan Li, Shilai Yi, Yongqiang Zheng, Shaolan He:
Analysis of Phylogenetic Relationships of Main Citrus Germplasms Based on Ftir Spectra of Petals. Intell. Autom. Soft Comput. 21(3): 295-304 (2015) - 2014
- Sergio Santander-Jiménez, Miguel A. Vega-Rodríguez:
Applying OpenMP-based parallel implementations of NSGA-II and SPEA2 to study phylogenetic relationships. CLUSTER 2014: 305-313 - 2013
- Brian A. Maurer, Steven W. Kembel, Andrew J. Rominger, Brian J. McGill:
Estimating metacommunity extent using data on species abundances, environmental variation, and phylogenetic relationships across geographic space. Ecol. Informatics 13: 114-122 (2013) - Girish Kumar, Swaraj Priyaranjan Kunal:
Historic demography and phylogenetic relationship of Euthynnus species based on COI sequence analyses. Int. J. Bioinform. Res. Appl. 9(5): 547-555 (2013) - Girish Kumar, Swaraj Priyaranjan Kunal, S. K. Shyama:
Evolutionary history and phylogenetic relationship between Auxis thazard and Auxis rochei inferred from COI sequences of mtDNA. Int. J. Bioinform. Res. Appl. 9(6): 604-613 (2013) - 2011
- Jike Cui, Todd F. DeLuca, Jae-Yoon Jung, Dennis P. Wall:
Phylogenetically informed logic relationships improve detection of biological network organization. BMC Bioinform. 12: 476 (2011) - 2010
- Samuel A. Smits, Cleber C. Ouverney:
Phylometrics: a pipeline for inferring phylogenetic trees from a sequence relationship network perspective. BMC Bioinform. 11(S-6): S18 (2010) - Veena Tandon, Devendra Kumar Biswal, Pramod Kumar Prasad, Chenkual Malsawmtluangi:
Systematic Position and Phylogenetic Relationships of the Cyclophyllidean Cestodes - An In-silico Study using ITS2 rDNA and Sequence-structure Alignment. BIOINFORMATICS 2010: 5-12 - Veena Tandon, Devendra Kumar Biswal, Pramod Kumar Prasad, Chenkual Malsawmtluangi:
Reconstructing the Phylogenetic Relationships of the Cyclophyllidean Cestodes: A Case Study Using ITS2 rDNA and Sequence-Structure Alignment. BIOSTEC (Selected Papers) 2010: 309-321 - 2008
- Matteo Brilli, Alessio Mengoni, Marco Fondi, Marco Bazzicalupo, Pietro Liò, Renato Fani:
Analysis of plasmid genes by phylogenetic profiling and visualization of homology relationships using Blast2Network. BMC Bioinform. 9 (2008) - Passoupathy Rajendrakumar, Akshaya Kumar Biswal, Sena M. Balachandran, Raman M. Sundaram:
In silicoAnalysis of Microsatellites in Organellar Genomes of Major Cereals for Understanding Their Phylogenetic Relationships. Silico Biol. 8(2): 87-104 (2008) - Ross D. King, Larisa N. Soldatova:
Formalising Phylogenetic Experiments: Ontologies and Logical Inference. AAAI Spring Symposium: Symbiotic Relationships between Semantic Web and Knowledge Engineering 2008: 59-62 - Satya Vani Guttula, Allam Appa Rao, G. R. Sridhar, M. S. Chakravarthy, Kunjum Nageshwararo, Paturi V. Rao, Hanuman Thota:
Cluster Analysis and Phylogenetic Relationship in Biomarker Identification of Microarray Data of Type 2 Diabetes and Nephropathy in Asian Indians. BIOCOMP 2008: 891-896 - Xiuwei Zhang, Maryam Zaheri, Bernard M. E. Moret:
Using Phylogenetic Relationships to Improve the Inference of Transcriptional Regulatory Networks. BMEI (1) 2008: 186-193 - 2007
- Monther Tarawneh, Bing Bing Zhou, Penghao Wang, Albert Y. Zomaya:
Investigation of Relationships among Excavate Taxa Using a New Quartet-Based Phylogenetic Analysis Method. AINA Workshops (1) 2007: 662-667 - 2006
- Ying Chih Lin, Chuan Yi Tang:
Exposing Phylogenetic Relationships by Genome Rearrangement. Adv. Comput. 68: 2-59 (2006) - Ying-Jun He, Trinh N. D. Huynh, Jesper Jansson, Wing-Kin Sung:
Inferring Phylogenetic Relationships Avoiding Forbidden Rooted Triplets. J. Bioinform. Comput. Biol. 4(1): 59-74 (2006) - Xin Zhang, Seungchan Kim, Tie Wang, Chitta Baral:
Joint learning of logic relationships for studying protein function using phylogenetic profiles and the rosetta stone method. IEEE Trans. Signal Process. 54(6-2): 2427-2435 (2006) - 2005
- Tetsuya Sato, Yoshihiro Yamanishi, Minoru Kanehisa, Hiroyuki Toh:
The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships. Bioinform. 21(17): 3482-3489 (2005) - Boris E. Shakhnovich:
Improving the Precision of the Structure-Function Relationship by Considering Phylogenetic Context. PLoS Comput. Biol. 1(1) (2005) - Boris E. Shakhnovich:
Correction: Improving the Precision of the Structure-Function Relationship by Considering Phylogenetic Context. PLoS Comput. Biol. 1(3) (2005) - Luay Nakhleh, Li-San Wang:
Phylogenetic Networks: Properties and Relationship to Trees and Clusters. Trans. Comp. Sys. Biology 2: 82-99 (2005) - Ying-Jun He, Trinh N. D. Huynh, Jesper Jansson, Wing-Kin Sung:
Inferring phylogenetic relationships avoiding forbidden rooted triplets. APBC 2005: 339-348 - 2001
- John Bluis, Ravi Nori, Hsin-Wei Wang, Pinglei Zhou, J. Peter Gogarten, Dong-Guk Shin:
Comparing Trees in a Phylogenetic Relationship Repository. BIBE 2001: 166-173 - 1997
- Alexander A. Kanapin, Vladimir A. Ivanov:
Relative rates of evolutionary changes in ORF1 proteins of nonviral retroelements: groups of phylogenetical relationship. German Conference on Bioinformatics 1997: 155-156 - 1996
- Xavier Cousin, Thierry Hotelier, Philippe Liévin, Jean-Pierre Toutant, Arnaud Chatonnet:
A cholinesterase genes server (ESTHER): a database of cholinesterase- related sequences for multiple alignments, phylogenetic relationships, mutations and structural data retrieval. Nucleic Acids Res. 24(1): 132-136 (1996)
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