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ORCIDAnne-Florence Bitbol
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- affiliation: EPFL, Institute of Bioengineering, Lausanne, Switzerland
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Journal Articles
- 2025
[j10]Cecilia Fruet
, Ella Linxia Müller, Claude Loverdo, Anne-Florence Bitbol:
Spatial structure facilitates evolutionary rescue by drug resistance. PLoS Comput. Biol. 21(4): 1012861 (2025)- 2024
- [j9]Nicola Dietler, Alia Abbara, Subham Choudhury, Anne-Florence Bitbol:
Impact of phylogeny on the inference of functional sectors from protein sequence data. PLoS Comput. Biol. 20(9): 1012091 (2024) - [j8]Alia Abbara, Lisa Pagani, Celia García-Pareja, Anne-Florence Bitbol:
Mutant fate in spatially structured populations on graphs: Connecting models to experiments. PLoS Comput. Biol. 20(9): 1012424 (2024) - 2023
- [j7]Carlos A. Gandarilla-Pérez, Sergio Pinilla, Anne-Florence Bitbol, Martin Weigt:
Combining phylogeny and coevolution improves the inference of interaction partners among paralogous proteins. PLoS Comput. Biol. 19(3) (2023) - 2022
- [j6]Andonis Gerardos, Nicola Dietler, Anne-Florence Bitbol:
Correlations from structure and phylogeny combine constructively in the inference of protein partners from sequences. PLoS Comput. Biol. 18(5) (2022) - 2020
- [j5]Loïc Marrec, Anne-Florence Bitbol:
Resist or perish: Fate of a microbial population subjected to a periodic presence of antimicrobial. PLoS Comput. Biol. 16(4) (2020) - 2019
- [j4]Shou-Wen Wang, Anne-Florence Bitbol, Ned S. Wingreen:
Revealing evolutionary constraints on proteins through sequence analysis. PLoS Comput. Biol. 15(4) (2019) - [j3]Guillaume Marmier, Martin Weigt, Anne-Florence Bitbol:
Phylogenetic correlations can suffice to infer protein partners from sequences. PLoS Comput. Biol. 15(10) (2019) - 2018
- [j2]Anne-Florence Bitbol:
Inferring interaction partners from protein sequences using mutual information. PLoS Comput. Biol. 14(11) (2018) - 2014
- [j1]Anne-Florence Bitbol, David J. Schwab:
Quantifying the Role of Population Subdivision in Evolution on Rugged Fitness Landscapes. PLoS Comput. Biol. 10(8) (2014)
Informal and Other Publications
- 2024
- [i5]Beatriz Borges, Negar Foroutan, Deniz Bayazit, Anna Sotnikova, Syrielle Montariol, Tanya Nazaretzky, Mohammadreza Banaei, Alireza Sakhaeirad, Philippe Servant, Seyed Parsa Neshaei, Jibril Frej, Angelika Romanou, Gail Weiss, Sepideh Mamooler, Zeming Chen, Simin Fan, Silin Gao, Mete Ismayilzada, Debjit Paul, Alexandre Schöpfer, Andrej Janchevski, Anja Tiede, Clarence Linden, Emanuele Troiani, Francesco Salvi, Freya Behrens, Giacomo Orsi, Giovanni Piccioli, Hadrien Sevel, Louis Coulon, Manuela Pineros-Rodriguez, Marin Bonnassies, Pierre Hellich, Puck van Gerwen, Sankalp Gambhir, Solal Pirelli, Thomas Blanchard, Timothée Callens, Toni Abi Aoun, Yannick Calvino Alonso, Yuri Cho, Alberto Silvio Chiappa, Antonio Sclocchi, Étienne Bruno, Florian Hofhammer, Gabriel Pescia, Geovani Rizk, Leello Dadi, Lucas Stoffl, Manoel Horta Ribeiro, Matthieu Bovel, Yueyang Pan, Aleksandra Radenovic, Alexandre Alahi, Alexander Mathis, Anne-Florence Bitbol, Boi Faltings, Cécile Hébert, Devis Tuia, François Maréchal, George Candea, Giuseppe Carleo, Jean-Cédric Chappelier, Nicolas Flammarion, Jean-Marie Fürbringer, Jean-Philippe Pellet, Karl Aberer, Lenka Zdeborová, Marcel Salathé, Martin Jaggi, Martin Rajman, Mathias Payer, Matthieu Wyart, Michael Gastpar, Michele Ceriotti, Ola Svensson, Olivier Lévêque, Paolo Ienne, Rachid Guerraoui, Robert West, Sanidhya Kashyap, Valerio Piazza, Viesturs Simanis, Viktor Kuncak, Volkan Cevher, Philippe Schwaller, Sacha Friedli, Patrick Jermann, Tanja Käser, Antoine Bosselut:
Could ChatGPT get an Engineering Degree? Evaluating Higher Education Vulnerability to AI Assistants. CoRR abs/2408.11841 (2024) - [i4]Anne-Florence Bitbol, Jennifer Listgarten, Tomás Pluskal, Anton Bushuiev, Roman Bushuiev:
Machine Learning for Protein-Protein and Protein-Ligand Interactions (Dagstuhl Seminar 24451). Dagstuhl Reports 14(11): 1-15 (2024) - 2023
- [i3]Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol:
Pairing interacting protein sequences using masked language modeling. CoRR abs/2308.07136 (2023) - 2022
- [i2]Umberto Lupo, Damiano Sgarbossa, Anne-Florence Bitbol:
Protein language models trained on multiple sequence alignments learn phylogenetic relationships. CoRR abs/2203.15465 (2022) - [i1]Damiano Sgarbossa, Umberto Lupo, Anne-Florence Bitbol:
Generative power of a protein language model trained on multiple sequence alignments. CoRR abs/2204.07110 (2022)
Coauthor Index
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