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ORCIDIn Silico Biology, Volume 8
Volume 8, Number 1, 2008
- John A. Bumpus, Mark Trax, Ashley Reisdorph, Cindi Boyd, Damien Gilbert, Sara Techau, Roy M. Ventullo:
An in silico Analysis of Cytochrome c from Phanerochaete chrysosporium: Its Amino Acid Sequence and Characterization of Gene Structural Elements. 1-13 - Aylan Farid Arenas, Andrés Julián Gutiérrez Escobar, Jorge E. Gomez-Marin:
Evolutionary Origin of the Protozoan Parasites Histone-like Proteins (HU). 15-20 - Zhuofei Xu, Yanjie Chao, Youhui Si, Jian Wang, Meilin Jin, Aizhen Guo, Ping Qian, Rui Zhou, Huanchun Chen:
The GTP Binding Sites Interacted with RNA-Dependent RNA Polymerase of Classical Swine Fever Virus in de novo Initiation. 21-32 - Simon J. Furney, Stephen F. Madden, Tomasz A. Kisiel, Desmond G. Higgins, Núria López-Bigas:
Distinct Patterns in the Regulation and Evolution of Human Cancer Genes. 33-46 - Longlong Yang, John R. Walker, John B. Hogenesch, Russell S. Thomas:
NetAtlas: A Cytoscape Plugin to Examine Signaling Networks Based on Tissue Gene Expression. 47-52 - Takeru Nakazato, Toru Takinaka, Hironori Mizuguchi, Hideo Matsuda, Hidemasa Bono, Minoru Asogawa:
BioCompass: A Novel Functional Inference Tool that Utilizes MeSH Hierarchy to Analyze Groups of Genes. 53-61 - Antony Le Béchec, Pierre-Joachim Zindy, Thomas Sierocinski, Dimitri Petritis, Audrey Bihouée, Nolwenn LeMeur, Jean Léger, Nathalie Théret:
M@IA: A Modular Open-Source Application for Microarray Workflow and Integrative Datamining. 63-69
Volume 8, Number 2, 2008
- Qing Yan:
Bioinformatics Databases and Tools in Virology Research: An Overview. 71-85 - Passoupathy Rajendrakumar, Akshaya Kumar Biswal, Sena M. Balachandran, Raman M. Sundaram:
In silicoAnalysis of Microsatellites in Organellar Genomes of Major Cereals for Understanding Their Phylogenetic Relationships. 87-104 - Adaya N. Cohen, Samuel Bocobza, Isana Veksler, Idan Gabdank, Danny Barash, Asaph Aharoni, Michal Shapira, Klara Kedem:
Computational Identification of Three-Way Junctions in Folded RNAs: A Case Study in Arabidopsis. 105-120 - Manish Kumar, Varun Thakur, Gajendra P. S. Raghava:
COPid: Composition Based Protein Identification. 121-128 - Aarti Garg, Gajendra P. S. Raghava:
A Machine Learning Based Method for the Prediction of Secretory Proteins Using Amino Acid Composition, Their Order and Similarity-Search. 129-140 - Preti Jain, Puneet Wadhwa, Ramazan Savas Aygün, Gopi K. Podila:
Vector-G: Multi-Modular SVM-Based Heterotrimeric G Protein Prediction. 141-155 - Jirí Kléma, Sylvain Blachon, Arnaud Soulet, Bruno Crémilleux, Olivier Gandrillon:
Constraint-Based Knowledge Discovery from SAGE Data. 157-175 - Claudia Pommerenke, Inga Gabriel, Boyke Bunk, Richard Münch, Isam Haddad, Petra Tielen, Irene Wagner-Döbler, Dieter Jahn:
ROSY - A Flexible and Universal Database and Bioinformatics Tool Platform for Roseobacter Related Species. 177-186 - Kuljeet S. Sandhu, Sunil Pandey, Souvik Maiti, Beena Pillai:
GASCO: Genetic Algorithm Simulation for Codon Optimization. 187-192
Volume 8, Numbers 3-4, 2008
- Babita Sharma:
Structure and Mechanism of a Transmission Blocking Vaccine Candidate Protein Pfs25 from P. falciparum: A Molecular Modeling and Docking Study. 193-206 - Palakkad Krishnan Unni Vinod, Kareenhalli V. Venkatesh:
A Steady State Model for the Transcriptional Regulation of Filamentous Growth in Saccharomyces cerevisiae. 207-222 - Sachin Pundhir, Hemant Vijayvargiya, Anil Kumar:
PredictBias: A Server for the Identification of Genomic and Pathogenicity Islands in Prokaryotes. 223-234 - Oruganty Krishnadev, Narayanaswamy Srinivasan:
A Data Integration Approach to Predict Host-Pathogen Protein-Protein Interactions: Application to Recognize Protein Interactions between Human and a Malarial Parasite. 235-250 - Siya Ram, Ram Lakhan Singh, Rishi Shanker:
In silico Comparison of Real-Time PCR Probes for Detection of Pathogens. 251-259 - Sudha Anand, Anand Anbarasu, Sethumadhavan Rao:
Influence of C-H...π Hydrogen Bonds in Interleukins. 261-273 - Dipankar Sengupta, Deeptak Verma, Pradeep Kumar Naik:
Docking-MM-GB/SA and ADME Screening of HIV-1 NNRTI Inhibitor: Nevirapine and its Analogues. 275-289 - Jiayu Wen, Tancred Frickey, Georg F. Weiller:
Computational Prediction of Candidate miRNAs and their Targets from Medicago truncatula Non-Protein-Coding Transcripts. 291-306 - Karuppiah Kanagarajadurai, Ramanathan Sowdhamini:
Sequence and Structural Analyses of Interleukin-8-Like Chemokine Superfamily. 307-330 - Vibhuti Sharma, Preeti Gupta, Aparna Dixit:
In silico Identification of Putative Drug Targets from Different Metabolic Pathways of Aeromonas hydrophila. 331-338 - Kenji Akiyama, Eisuke Chikayama, Hiroaki Yuasa, Yukihisa Shimada, Takayuki Tohge, Kazuo Shinozaki, Masami Y. Hirai, Tetsuya Sakurai, Jun Kikuchi, Kazuki Saito:
PRIMe: A Web Site That Assembles Tools for Metabolomics and Transcriptomics. 339-345 - Masami Kamasawa, Jun-Ichi Horiuchi:
Identification and Characterization of Polyadenylation Signal (PAS) Variants in Human Genomic Sequences Based on Modified EST Clustering. 347-361 - Sabah Khalid, Mohsin Khan, Chandrasekhar Babu Gorle, Karl Fraser, Ping Wang, Xiaohui Liu, Suling Li:
MaXlab: A Novel Application for the Cross Comparison and Integration of Biological Signatures from Microarray Studies. 363-376
Volume 8, Numbers 5-6, 2008
- Bram Sebastian, Samuel E. Aggrey:
Specificity and Sensitivity of PROMIR, ERPIN and MIR-ABELA in Predicting Pre-MicroRNAs in the Chicken Genome. 377-381 - Yury V. Kondrakhin, Ruslan N. Sharipov, Alexander E. Kel, Fedor A. Kolpakov:
Identification of Differentially Expressed Genes by Meta-Analysis of Microarray Data on Breast Cancer. 383-411 - Sher-ullah S. S. Khoyratty, Manoel T. Souza Jr., Yasmina Jaufeerally-Fakim:
Structural Analysis of Catalase from Two Musa Accessions, FHIA18 and Williams, and from Ravenala madagascariensis. 413-425 - Sudha Jayaraman, Kavita Shah:
Comparative Studies on Inhibitors of HIV Protease: A Target for Drug Design. 427-447 - Neha Gandhi, Kathy Young, John R. Warmington, Ricardo L. Mancera:
Characterization of Sequence and Structural Features of the Candida krusei Enolase. 449-460 - Andrea Brancale, Chrisanthy Vlachaki, Dimitrios Vlachakis:
Molecular Modelling Study of the 3D Structure of the Bovine Viral Diarrhea Virus (BVDV) Helicase. 461-469 - Natarajan Vidya, Bagavathkumar Vadivukkarasi, Gopalakrishnan Manivannan, Krishnan Anbarasu:
Molecular Modeling and Docking Studies of Glutamate Racemase in Vibrio vulnificus CMCP6. 471-483 - Lan K. Nguyen, Don Kulasiri:
On Multiple Regulatory Mechanisms in the Tryptophan Operon System in Escherichia coli: In silico Study of Perturbation Dynamics. 485-510 - Ananyo Choudhury, Ansuman Lahiri:
TRABAS: A Database for Transcription Regulation by ABA Signaling. 511-516 - Biju Thomas, Rathanam Boopathy:
Essential Amino Acids for the Stability of Human Butyrylcholinesterase as Predicted by CUPSAT Server. 517-529 - Diane A. Flasch, Ellen Rebman, Emily H. Olfson, Khanh K. Nguyen, Lucasz E. Geirut, Megan C. Garland, Christi M. Lindorfer, Howard M. Laten:
Analysis of Insertional Sites of the SIRE1 Retroelement Family from Glycine Max Using GenBank BAC-end Sequences. 531-543 - Sandeep J. Joseph, Kelly Robbins, Wensheng Zhang, Romdhane Rekaya:
Effects of Misdiagnosis in Input Data on the Identification of Differential Expression Genes in Incipient Alzheimer Patients. 545-554
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