• 
  Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Preface.

Gene Regulation

• 
  Serafim Batzoglou, Lior Pachter: Gene Regulation - Session Introduction. 3-4
• 
  Daniel P. Berrar, C. Stephen Downes, Werner Dubitzky: Multiclass Cancer Classification Using Gene Expression Profiling and Probabilistic Neural Networks. 5-16
• 
  Michiel J. L. de Hoon, Seiya Imoto, Kazuo Kobayashi, Naotake Ogasawara, Satoru Miyano: Inferring Gene Regulatory Networks from Time-Ordered Gene Expression Data of Bacillus Subtilis Using Differential Equations. 17-28
• 
  Eleazar Eskin, Uri Keich, Mikhail S. Gelfand, Pavel A. Pevzner: Genome-Wide Analysis of Bacterial Promoter Regions. 29-40
• 
  R. Ganesh, Deborah A. Siegele, Thomas R. Ioerger: MOPAC: MOtif Finding by Preprocessing and Agglomerative Clustering from Microarrays. 41-52
• 
  J. Jaeger, Rimli Sengupta, Walter L. Ruzzo: Improved Gene Selection for Classification of Microarrays. 53-64
• 
  Hongzhe Li, Yihui Luan: Kernel Cox Regression Models for Linking Gene Expression Profiles to Censored Survival Data. 65-76
• 
  T. M. Murali, Simon Kasif: Extracting Conserved Gene Expression Motifs from Gene Expression Data. 77-88
• 
  Eran Segal, Alexis Battle, Daphne Koller: Decomposing Gene Expression into Cellular Processes. 89-100

Genome, Pathway, and Interaction Bioinformatics

• 
  Peter D. Karp, Eric P. Neumann, Alexander J. Hartemink, Pedro Romero: Genome, Pathway, and Interaction Bioinformatics - Session Introduction. 101-103
• 
  Ryan E. Altenbaugh, Kenneth J. Kauffman, Jeremy S. Edwards: Suitability and Utility of Computational Analysis Tools: Characterization of Erythrocyte Parameter Variation. 104-115
• 
  Marco Antoniotti, F. Park, Alberto Policriti, Nadia Ugel, Bud Mishra: Foundations of a Query and Simulation System for the Modeling of Biochemical and Biological Processes. 116-127
• 
  Lonnie Chrisman, Pat Langley, Stephen D. Bay: Incorporating Biological Knowledge into Evaluation of Causal Regulatory Hypotheses. 128-139
• 
  Minghua Deng, Fengzhu Sun, Ting Chen: Assessment of the reliability of protein-protein interactions and protein function prediction. 140-151
• 
  Hiroshi Matsuno, Ryutaro Murakani, Rie Yamane, Naoyuki Yamasaki, Sachie Fujita, Haruka Yoshimori, Satoru Miyano: Boundary Formation by Notch Signaling in Drosophila Multicellular Systems: Experimental Observations and Gene Network Modeling by Genomic Object Net. 152-163
• 
  V. Anne Smith, Erich D. Jarvis, Alexander J. Hartemink: Influence of Network Topology and Data Collection on Network Inference. 164-175

Informatics Approaches in Structural Genomics

• 
  Sean D. Mooney, Patricia C. Babbitt: Informatics Approaches in Structural Genomics - Session Introduction. 176-179
• 
  Robert C. Edgar, Kimmen Sjölander: Simultaneous Sequence Alignment and Tree Construction Using Hidden Markov Models. 180-191
• 
  Kristian Kersting, Tapani Raiko, Stefan Kramer, Luc De Raedt: Towards Discovering Structural Signatures of Protein Folds Based on Logical Hidden Markov Models. 192-203
• 
  Mike P. Liang, Douglas L. Brutlag, Russ B. Altman: Automated Construction of Structural Motifs for Predicting Functional Sites on Protein Structures. 204-215
• 
  Predrag Radivojac, Zoran Obradovic, Celeste J. Brown, A. Keith Dunker: Prediction of Boundaries Between Intrinsically Ordered and Disordered Protein Regions. 216-227
• 
  Rohit Singh, Mitul Saha: Identifying Structural Motifs in Proteins. 228-239
• 
  Guang Song, Shawna L. Thomas, Ken A. Dill, J. Martin Scholtz, Nancy M. Amato: A Path Planning-Based Study of Protein Folding with a Case Study of Hairpin Formation in Protein G and L. 240-251
• 
  Niklas von Öhsen, Ingolf Sommer, Ralf Zimmer: Profile-Profile Alignment: A Powerful Tool for Protein Structure Prediction. 252-263
• 
  Jinbo Xu, Ming Li, Guo-Hui Lin, Dongsup Kim, Ying Xu: Protein Threading by Linear Programming. 264-275

Genome-wide Analysis and Comparative Genomics

• 
  Liping Wei, Inna Dubchak, Victor V. Solovyev: Genome-wide Analysis and Comparative Genomics - Session Introduction. 276-278
• 
  Louigi Addario-Berry, Michael T. Hallett, Jens Lagergren: Towards Identifying Lateral Gene Transfer Events. 279-290
• 
  Evgeny Cheremushkin, Alexander E. Kel: Whole Genome Human/Mouse Phylogenetic Footprinting of Potential Transcription Regulatory Signals. 291-302
• 
  Tamer Kahveci, Ambuj K. Singh: MAP: Searching Large Genome Databases. 303-314
• 
  Luay Nakhleh, Jerry Sun, Tandy Warnow, C. Randal Linder, Bernard M. E. Moret, Anna Tholse: Towards the Development of Computational Tools for Evaluating Phylogenetic Network Reconstruction Methods. 315-326
• 
  Victor Olman, Dong Xu, Ying Xu: Identification of Regulatory Binding Sites Using Minimum Spanning Trees. 327-338
• 
  Sascha Ott, Yoshinori Tamada, Hideo Bannai, Kenta Nakai, Satoru Miyano: Intrasplicing - Analysis of Long Intron Sequences. 339-350
• 
  Tzu L. Phang, Margaret C. Neville, Michael Rudolph, Lawrence Hunter: Trajectory Clustering: A Non-Parametric Method for Grouping Gene Expression Time Courses with Applications to Mammary Development. 351-362
• 
  Shiquan Wu, Xun Gu: Algorithms for Multiple Genome Rearrangement by Signed Reversals. 363-374
• 
  Tetsushi Yada, Yasushi Totoki, Y. Takaeda, Yasubumi Sakaki, Toshihisa Takagi: DIGIT: A Novel Gene Finding Program by Combining Gene-Finders. 375-387

Linking Biomedical Language, Information and Knowledge

• 
  Lynette Hirschman, Carol Friedman, Robin McEntire, Cathy H. Wu: Linking Biomedical Language, Information and Knowledge - Session Introduction. 388-390
• 
  Patrick Glenisson, Peter Antal, Janick Mathys, Yves Moreau, Bart De Moor: Evaluation of the Vector Space Representation in Text-Based Gene Clustering. 391-402
• 
  Daniel Hanisch, Juliane Fluck, Heinz-Theodor Mevissen, Ralf Zimmer: Playing Biology's Name Game: Identifying Protein Names in Scientific Text. 403-414
• 
  Hongfang Liu, Carol Friedman: Mining Terminological Knowledge in Large Biomedical Corpora. 415-426
• 
  Meenakshi Narayanaswamy, K. E. Ravikumar, K. Vijay-Shanker: A Biological Named Entity Recognizer.
• 
  Indra Neil Sarkar, M. N. Cantor, R. Gelman, Frank W. Hartel, Yves A. Lussier: Linking Biomedical Language Information and Knowledge Resources in the 21st Century: GO and UMLS. 427-450
• 
  Ariel S. Schwartz, Marti A. Hearst: A Simple Algorithm for Identifying Abbreviation Definitions in Biomedical Text. 451-462

Human Genome Variation: Haplotypes, Linkage Disequilibrium, and Populations

• 
  Francisco M. de la Vega, Kenneth K. Kidd, Isaac S. Kohane: Human Genome Variation: Haplotypes, Linkage Disequilibrium, and Populations - Session Introduction. 463-465
• 
  Hadar I. Avi-Itzhak, Xiaoping Su, Francisco M. de la Vega: Selection of Minimum Subsets of Single Nucleotide Polymorphisms to Capture Haplotype Block Diversity. 466-477
• 
  Josep M. Comeron, Martin Kreitman, Francisco M. de la Vega: On the Power to Detect SNP/Phenotype Association in Candidate Quantitative Trait Loci Genomic Regions: A Simulation Study. 478-489
• 
  Derek Gordon, Mark A. Levenstien, Stephen J. Finch, Jürg Ott: Errors and Linkage Disequilibrium Interact Multiplicatively When Computing Sample Sizes for Genetic Case-Control Association Studies. 490-501
• 
  Mikko Koivisto, Markus Perola, T. Varilo, W. Hennah, J. Ekelund, Margus Lukk, L. Peltonen, Esko Ukkonen, Heikki Mannila: An MDL Method for Finding Haplotype Blocks and for Estimating the Strength of Haplotype Block Boundaries. 502-513
• 
  Alex Lancaster, Mark P. Nelson, Diogo Meyer, Richard M. Single, Glenys Thomson: PyPop: A Software Framework for Population Genomics: Analyzing Large-Scale Multi-Locus Genotype Data. 514-525
• 
  Bruce Rannala, Jeff P. Reeve: Joint Bayesian Estimation of Mutation Location and Age Using Linkage Disequilibrium. 526-534
• 
  Doug Stryke, Conrad C. Huang, Michiko Kawamoto, Susan J. Johns, Elaine J. Carlson, Joseph A. Deyoung, Maya K. Leabman, Ira Herskowitz, Kathleen M. Giacomini, Thomas E. Ferrin: SNP Analysis and Presentation in the Pharmacogenetics of Membrane Transporters Project. 535-547
• 
  Anna Tsalenko, Amir Ben-Dor, Nancy Cox, Zohar Yakhini: Methods for Analysis and Visualization of SNP Genotype Data for Complex Diseases. 548-561

Biomedical Ontologies

• 
  Olivier Bodenreider, Joyce A. Mitchell, Alexa T. McCray: Biomedical Ontologies - Session Introduction. 562-564
• 
  Liviu Badea: Functional Discrimination of Gene Expression Patterns in Terms of the Gene Ontology. 565-576
• 
  Udo Hahn, Stefan Schulz: Towards a Broad-Coverage Biomedical Ontology Based on Description Logics. 577-588
• 
  Patrick Lambrix, Anna Edberg: Evaluation of Ontology Merging Tools in Bioinformatics. 589-600
• 
  Phillip W. Lord, Robert D. Stevens, Andy Brass, Carole A. Goble: Semantic Similarity Measures as Tools for Exploring the Gene Ontology. 601-612
• 
  P. Karina Tulipano, William S. Millar, James J. Cimino: Linking Molecular Imaging Terminology to the Gene Ontology (GO). 613-623
• 
  Chris Wroe, Robert Stevens, Carole A. Goble, Michael Ashburner: A Methodology to Migrate the Gene Ontology to a Description Logic Environment Using DAML+OIL. 624-635

Special Paper

• 
  Russ B. Altman, A. Keith Dunker, Lawrence Hunter, Teri E. Klein: Special Paper - Introduction. 636-637
• 
  H. D. Cash, J. W. Hoyle, A. J. Sutton: Development Under Extreme Conditions: Forensic Bioinformatics in the Wake of the World Trade Center Disaster. 638-653

last updated on Mon May 20 02:33:09 2013 by the dblp team
data released under the ODC-BY 1.0 license
see also our legal information page