- Lingyu Ma, Marco Reisert, Hans Burkhardt:
RENNSH: A Novel ά-Helix Identification Approach for Intermediate Resolution Electron Density Maps. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 228-239 (2012) - Christopher Ma, Thomas K. F. Wong, Tak Wah Lam
, Wing-Kai Hon
, Kunihiko Sadakane
, Siu-Ming Yiu:
An Efficient Alignment Algorithm for Searching Simple Pseudoknots over Long Genomic Sequence. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1629-1638 (2012) - Wenji Ma, Yong Yang, Zhi-Zhong Chen, Lusheng Wang
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Mutation Region Detection for Closely Related Individuals without a Known Pedigree. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 499-510 (2012) - Piraveenan Mahendra, Mikhail Prokopenko
, Albert Y. Zomaya
:
Assortative Mixing in Directed Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 66-78 (2012) - Arthur W. Mahoney, Gregory J. Podgorski, Nicholas S. Flann
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Multiobjective Optimization Based-Approach for Discovering Novel Cancer Therapies. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 169-184 (2012) - Michael Margaliot, Tamir Tuller
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Stability Analysis of the Ribosome Flow Model. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1545-1552 (2012) - Michael Margaliot, Tamir Tuller
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On the Steady-State Distribution in the Homogeneous Ribosome Flow Model. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1724-1736 (2012) - Tobias Marschall
, Inke Herms, Hans-Michael Kaltenbach
, Sven Rahmann
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Probabilistic Arithmetic Automata and Their Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1737-1750 (2012) - Tommaso Mazza
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High Performance Computational Systems Biology. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 641-642 (2012) - Tommaso Mazza
, Paolo Ballarini
, Rosita Guido
, Davide Prandi
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The Relevance of Topology in Parallel Simulation of Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 911-923 (2012) - Selim Mimaroglu, Emin Aksehirli:
DICLENS: Divisive Clustering Ensemble with Automatic Cluster Number. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 408-420 (2012) - Georgina Mirceva, Ivana Cingovska, Zoran Dimov, Danco Davcev:
Efficient Approaches for Retrieving Protein Tertiary Structures. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1166-1179 (2012) - Michael Mooney
, Beth Wilmot, Shannon K. McWeeney:
The GA and the GWAS: Using Genetic Algorithms to Search for Multilocus Associations. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 899-910 (2012) - Loris Nanni, Alessandra Lumini
, Dinesh Gupta, Aarti Garg:
Identifying Bacterial Virulent Proteins by Fusing a Set of Classifiers Based on Variants of Chou's Pseudo Amino Acid Composition and on Evolutionary Information. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 467-475 (2012) - Amina Noor, Erchin Serpedin, Mohamed N. Nounou, Hazem N. Nounou
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Inferring Gene Regulatory Networks via Nonlinear State-Space Models and Exploiting Sparsity. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1203-1211 (2012) - Mindaugas Norkus
, Damien Fay, Mary J. Murphy
, Frank Barry, Gearóid Ó Laighin
, Liam Kilmartin:
On the Application of Active Learning and Gaussian Processes in Postcryopreservation Cell Membrane Integrity Experiments. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 846-856 (2012) - Mohamed N. Nounou, Hazem N. Nounou
, Nader Meskin
, Aniruddha Datta, Edward R. Dougherty:
Multiscale Denoising of Biological Data: A Comparative Analysis. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1539-1545 (2012) - Hazem N. Nounou
, Mohamed N. Nounou, Nader Meskin
, Aniruddha Datta, Edward R. Dougherty:
Fuzzy Intervention in Biological Phenomena. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1819-1825 (2012) - Jimmy Omony, Astrid R. Mach-Aigner
, Leo H. de Graaff, Gerrit van Straten
, Anton J. B. van Boxtel:
Evaluation of Design Strategies for Time Course Experiments in Genetic Networks: Case Study of the XlnR Regulon in Aspergillus niger. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1316-1325 (2012) - Ibrahim Burak Özyurt:
Automatic Identification and Classification of Noun Argument Structures in Biomedical Literature. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1639-1648 (2012) - Ranadip Pal
, Sonal Bhattacharya:
Transient Dynamics of Reduced-Order Models of Genetic Regulatory Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 9(4): 1230-1244 (2012) - Sucheendra K. Palaniappan
, S. Akshay, Bing Liu, Blaise Genest, P. S. Thiagarajan:
A Hybrid Factored Frontier Algorithm for Dynamic Bayesian Networks with a Biopathways Application. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1352-1365 (2012) - Herbert Pang, Stephen L. George, Ken Hui, Tiejun Tong
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Gene Selection Using Iterative Feature Elimination Random Forests for Survival Outcomes. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1422-1431 (2012) - David R. Paoletti, Dan E. Krane, Travis E. Doom, Michael L. Raymer:
Inferring the Number of Contributors to Mixed DNA Profiles. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 113-122 (2012) - Nicola Paoletti
, Pietro Liò
, Emanuela Merelli
, Marco Viceconti
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Multilevel Computational Modeling and Quantitative Analysis of Bone Remodeling. IEEE ACM Trans. Comput. Biol. Bioinform. 9(5): 1366-1378 (2012) - George Papadakis, Electra Gizeli:
In Silico Search of DNA Drugs Targeting Oncogenes. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1826-1830 (2012) - Andrea Passerini
, Marco Lippi
, Paolo Frasconi:
Predicting Metal-Binding Sites from Protein Sequence. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 203-213 (2012) - Paul Phipps, Sergey Bereg:
Optimizing Phylogenetic Networks for Circular Split Systems. IEEE ACM Trans. Comput. Biol. Bioinform. 9(2): 535-547 (2012) - Yuri Pirola
, Paola Bonizzoni
, Tao Jiang
:
An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations and Mutations. IEEE ACM Trans. Comput. Biol. Bioinform. 9(1): 12-25 (2012) - Yuri Pirola
, Gianluca Della Vedova
, Stefano Biffani
, Alessandra Stella, Paola Bonizzoni
:
A Fast and Practical Approach to Genotype Phasing and Imputation on a Pedigree with Erroneous and Incomplete Information. IEEE ACM Trans. Comput. Biol. Bioinform. 9(6): 1582-1594 (2012)