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ORCIDShannon K. McWeeney
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2020 – today
- 2024
[i2]Nathaniel J. Evans, Gordon B. Mills, Guanming Wu, Xubo Song, Shannon K. McWeeney:
Data Valuation with Gradient Similarity. CoRR abs/2405.08217 (2024)- 2023
- [j13]Joshua G. Burkhart
, Guanming Wu, Xubo Song, Francesco Raimondi, Shannon K. McWeeney, Melissa H. Wong, Youping Deng:
Biology-inspired graph neural network encodes reactome and reveals biochemical reactions of disease. Patterns 4(7): 100758 (2023) - 2021
- [i1]Benjamin A. Cordier, Nicolas P. D. Sawaya, Gian Giacomo Guerreschi, Shannon K. McWeeney:
Biology and medicine in the landscape of quantum advantages. CoRR abs/2112.00760 (2021)
2010 – 2019
- 2018
- [c4]Harry Hochheiser, Javed Mostafa, Nils Gehlenborg, Shannon K. McWeeney, Valerie Florance:
Data Science in Biomedical Informatics Education: Critical Problems and Innovative Solutions. AMIA 2018 - 2016
- [j12]Daniel Bottomly, Shannon K. McWeeney, Beth Wilmot:
HitWalker2: visual analytics for precision medicine and beyond. Bioinform. 32(8): 1253-1255 (2016) - [j11]Jason E. McDermott, Hugh D. Mitchell, Lisa E. Gralinski, Amie J. Eisfeld, Laurence Josset, Armand Bankhead III, Gabriele Neumann, Susan C. Tilton, Alexandra Schäfer, Chengjun Li, Shufang Fan, Shannon K. McWeeney, Ralph S. Baric, Michael G. Katze, Katrina M. Waters:
The effect of inhibition of PP1 and TNFα signaling on pathogenesis of SARS coronavirus. BMC Syst. Biol. 10: 93 (2016) - 2015
- [j10]Daniel Bottomly, Beth Wilmot, Shannon K. McWeeney:
plethy: management of whole body plethysmography data in R. BMC Bioinform. 16: 134:1-134:5 (2015) - [c3]V. M. Megler, David Maier, Daniel Bottomly, Libbey White, Shannon K. McWeeney, Beth Wilmot:
Data Like This: Ranked Search of Genomic Data Vision Paper. ExploreDB@SIGMOD/PODS 2015: 3-5 - 2014
- [j9]Daniel Bottomly, Beth Wilmot, Shannon K. McWeeney:
oligoMask: A Framework for Assessing and Removing the Effect of Genetic Variants on Microarray Probes. R J. 6(1): 159 (2014) - [c2]Aurora S. Blucher, Shannon K. McWeeney:
Challenges in Secondary Analysis of High Throughput Screening Data. Pacific Symposium on Biocomputing 2014: 114-124 - 2013
- [j8]Daniel Bottomly, Beth Wilmot, Jeffrey W. Tyner, Christopher A. Eide, Marc M. Loriaux, Brian J. Druker, Shannon K. McWeeney:
HitWalker: variant prioritization for personalized functional cancer genomics. Bioinform. 29(4): 509-510 (2013) - [j7]David L. Gibbs, Arie Baratt, Ralph S. Baric, Yoshihiro Kawaoka, Richard D. Smith, Eric S. Orwoll, Michael G. Katze, Shannon K. McWeeney:
Protein co-expression network analysis (ProCoNA). J. Clin. Bioinform. 3: 11 (2013) - [j6]Armand Bankhead III, Emiliano Mancini, Amy C. Sims, Ralph S. Baric, Shannon K. McWeeney, Peter M. A. Sloot:
A simulation framework to investigate in vitro viral infection dynamics. J. Comput. Sci. 4(3): 127-134 (2013) - 2012
- [j5]Ovidiu D. Iancu, Sunita Kawane, Daniel Bottomly, Robert P. Searles, Robert Hitzemann, Shannon K. McWeeney:
Utilizing RNA-Seq data for de novo coexpression network inference. Bioinform. 28(12): 1592-1597 (2012) - [j4]Michael Mooney, Beth Wilmot, Shannon K. McWeeney:
The GA and the GWAS: Using Genetic Algorithms to Search for Multilocus Associations. IEEE ACM Trans. Comput. Biol. Bioinform. 9(3): 899-910 (2012) - 2011
- [j3]Jason E. McDermott, Harish Shankaran, Amie J. Eisfeld, Sarah E. Belisle, Gabriele Neumann, Chengjun Li, Shannon K. McWeeney, Carol Sabourin, Yoshihiro Kawaoka, Michael G. Katze, Katrina M. Waters:
Conserved host response to highly pathogenic avian influenza virus infection in human cell culture, mouse and macaque model systems. BMC Syst. Biol. 5: 190 (2011) - [c1]Armand Bankhead III, Emiliano Mancini, Amy C. Sims, Ralph S. Baric, Shannon K. McWeeney, Peter M. A. Sloot:
A Simulation Framework to Investigate in vitro Viral Infection Dynamics. ICCS 2011: 1798-1807
2000 – 2009
- 2007
- [j2]Ted Laderas, Cory Bystrom, Debra McMillen, Guang Fan, Shannon K. McWeeney:
TandTRAQ: an open-source tool for integrated protein identification and quantitation. Bioinform. 23(24): 3394-3396 (2007) - 2002
- [j1]Amit Bahl, Brian P. Brunk, Ross L. Coppel, Jonathan Crabtree, Sharon J. Diskin, Martin J. Fraunholz, Gregory R. Grant, Dinesh Gupta, Robert L. Huestis, Jessica C. Kissinger, Philip Labo, Li Li, Shannon K. McWeeney, Arthur J. Milgram, David S. Roos, Jonathan Schug, Christian J. Stoeckert Jr.:
PlasmoDB: the Plasmodium genome resource. An integrated database providing tools for accessing, analyzing and mapping expression and sequence data (both finished and unfinished). Nucleic Acids Res. 30(1): 87-90 (2002)
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